LOC110510140


Basic Information

Item Value
gene id LOC110510140
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 34456414 ~ 34462457 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021591489.2
TGGAGATGGCCATGAAAAAACAAACAGCCAAAGTGTCTCCCTCGCCCATCACGGGTCCTGCTGTCTTTCTGCTGCCCACTCCACAGGAGCATGCTGAAAGACAGAGGGGACCCCAGCCCGCGGCTGAAGATGGGCAGGATGGGGGGAAGGGTGGAGACCAGGCAGAAGAGtgtgtggagaagagagaggacagtaagAGCCGCTGTGCCCGCTGCCCGCTGAGAGCCATGTGTCGAGCTGTGTGGGGGCTGGTCCTTGGGTGCTGTGTGGCCCTGGCGTGGGCAGTGGGAACACACAGTGCCAAGCAGTCTCTGGAGCAGCTCCATGCCCCCTTCTTCACTATTTGGTTCTGCAGTACATGgaacctcctcctctttcccctctactACCTGGGACACCTGCTAGGGGCAGAGCAGAGACAGTGGCCCACAGCCTGCTTCAGGCAGTGCAGTGGCTTCCTGGTGGAGGAGGACATGACAGTGAGAGTGCTCCTGAAGGGTGCAGCACCGTTCTCCGTGCTGTGGAGTCTCTCAGGCTACCTGTACCTGCTGGCTCTTTGTCGCATCTCAGCGGGAGACGCTAGCGCCATTCTCTGCTGTAGCCAGGGCTTCATCTTCCTCCTGTCCTGGATCGGACTCAACGACCGGTTCATGGGTGTACGGATAGTGGCTGTAATTCTCTCCATCACAGGAATCGTCATGATGGCGTATGCTGATGGTTTCCATAGCGACTCAATCACAGGGGTGGCCCTGGCAGTAGGCTCAGCTTCAACCACTGCCCTGTACAAGGTGTTGTTTAGAAAGCGAGTGGGAGAGGTGCAACCGGGTACGGCCAGTGTTCTGCTGTCCTGTGTGGGGCTATGCTGCTGTGTCCTCCACTCCTGGGTGTGTGTGATACTCTACCTCACACATGTGGAGTACTGGCCTCCAATCCAGTACATCCCCTGGGACGCATTGTGCGTGATGGCCTCTCTGCTCCTCGCTTTCAATGTCTTGGTGAATCTAGGAAGTGTGCTTGCCTACCCCTCCCTTATTTCTCTTGGAATGTTACTGAGCATCCCAGCTAATTCAGCAGTGGATTTCTATGTCGCTGCAGCCCCCCAGCTCAGCCAGGTCAGAGTGGCTGCAGCAGCTATCATCGGGGTGGGCTACCTCTTACTGCTGCTCCCTGGAGACTGGGATGACAGTGTTGTCCACTGGATAGAGGGTCTGTGGCAAGGAGGATGGAAAGAGGACAGTGTGGTTGGAGAAGATGGAGGAGCTGATGGAGGAGAAATTGCAAAGCCCAAGCCCAAACCAGCAGGCATTGCTGCCCTAACATGATGCACTTTGGTTTTACATGACAGAACTTGGTGTCAAAAGTCTCTCAACCAAAACCAGGGACGCAACTTTGGTGTTAGAAGTGGGGGGGAATAACTTGGTGGGGGGTTTGGGGGTCCTCCCATTTTTGGGGGCATATAAAGCAAATGTCCTGCATTTCTGCACAATCTAATATGACCCATTGCCCTTTCTAGCCATCTCTATTTAGAACAACATAAAGAAAGCAAAAATGACCagtcatcaagctaggtaagagATCCTTATTAAATATGTTGAAGTGATTgataagactgaactagatcaATGGTAATTCAATAATCAATATTGTGCTGCACCTTGAACCAACAGCCTAACAAACAAACAACTCTTACAAATAAAGTACAAAGACTTTTGATTGTATTTATTACATTTCAGCCAGCCCGAGCCACCTGCACGCCCAACCCCCATCAGTCTAGTCAaaaactcaactctctccccatcttttttTATGTCTCAAGGAAAGGTTTGAA

Function

NR:

description
putative thiamine transporter SLC35F3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021591489.2 True 1828 mRNA 0.52 7 34456414 34462457

Neighbor

gene id symbol gene type direction distance location
LOC110510141 LOC106563694 coding upstream 783 34447839 ~ 34455631 (+)
LOC118945289 NA coding upstream 59248 34393990 ~ 34397166 (+)
LOC110510136 LOC106602966 coding upstream 120673 34329181 ~ 34335741 (+)
LOC110509380 NA coding upstream 153067 34299885 ~ 34303347 (+)
LOC110510134 LOC106563705 coding upstream 165860 34279612 ~ 34290554 (+)
znrd2 ssa27 coding downstream 7395 34469852 ~ 34472094 (+)
LOC110510143 LOC106563691 coding downstream 10110 34472567 ~ 34477333 (+)
ehbp1l1b LOC100380650 coding downstream 16006 34478463 ~ 34516156 (+)
LOC110510145 rab1a coding downstream 54165 34516622 ~ 34521725 (+)
cd248b LOC106563689 coding downstream 79363 34541820 ~ 34544760 (+)
G2177496 NA non-coding upstream 3764 34452173 ~ 34452650 (+)
G2177426 NA non-coding upstream 91994 34362522 ~ 34364420 (+)
G2177422 NA non-coding upstream 99951 34356240 ~ 34356463 (+)
G2177420 NA non-coding upstream 101249 34354938 ~ 34355165 (+)
G2177408 NA non-coding upstream 130781 34325423 ~ 34325633 (+)
G2177506 NA non-coding downstream 32157 34494614 ~ 34495869 (+)
G2177507 NA non-coding downstream 33848 34496305 ~ 34496775 (+)
G2177515 NA non-coding downstream 76813 34539270 ~ 34539757 (+)
G2177471 NA non-coding downstream 83615 34546072 ~ 34546586 (+)
G2177470 LOC106563688 non-coding downstream 89852 34552309 ~ 34565130 (+)
LOC110510132 rin1 other upstream 224231 34227307 ~ 34236487 (+)
LOC110510125 LOC106563697 other upstream 321015 34105921 ~ 34135553 (+)
cxxc5a LOC106563628 other upstream 1220879 33212994 ~ 33235535 (+)
LOC110509425 LOC106563572 other upstream 2330336 32115629 ~ 32150579 (+)
G2175413 NA other upstream 2418678 32037047 ~ 32037736 (+)
LOC110510159 LOC106563679 other downstream 340482 34784319 ~ 34825545 (+)
ndufa2 ndua2 other downstream 1043391 35505848 ~ 35507048 (+)
G2179418 NA other downstream 1389197 35851654 ~ 35856462 (+)
G2179454 LOC106602907 other downstream 1450033 35912490 ~ 35925031 (+)
G2180218 LOC106563757 other downstream 2216114 36678571 ~ 36680297 (+)

Expression


Co-expression Network