LOC110510168 (LOC106602948)


Basic Information

Item Value
gene id LOC110510168
gene name LOC106602948
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 34872715 ~ 34876341 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021591530.2
CATACTAGTGGAGGTTCTTTCAAATATGTGAAACGACTATCCAATCAGACCGGTCTCGTAGTCAGCTAGCGCGAGGCTGTGTATGCTACTCAGCTGTTAAAGGGAAGGACGTCGGATCGTGTGACTGACTGCGCTCAAACAAACACAGGAGCTGGTGGACGAGATATTCTGGTGGTGCAAGAGAACATCCACCATTTTTCAGAATGGCCAAAGGTGACGCTCGTAAGCCGAAGGGCAAGATGTCTGCCTATGCCTACTTTGTTCAAACCTGCCGAGAAGAACACAAAAATAAGAATCCAGAGATCCCAGTCAACTTTTCAGAGTTTTCTAAGAAGTGCTCTGGAAGATGGAAGACAATGTCTCCAAAGGAGAAGTCAAAGTTTGAGGACCAGGCCAAGCAGGACAAAGCTCGCTATGATTCGGAAATGACGAGCTATGGTCCTCCTGGGAAAAGGGGCAAGAAGGCACTGAAGGATCCCAATGCGCCAAAGAGACCTCAATCTGGATTCTTTGTTTTCTGTGCTGAGCAGCGCCCCAAGATCAAAGCCCAACACCCAAGCTTTGGCATTGGGGATGTGGCCAAGAAGCTTGGTGAGATGTGGAACAACTTGACAGACTCCAATAAGCAGCCGTATCTTGCCAAAGCCAACAAACTCAAGGAAAAATACCAAAAGGATGTGGCAGATTACAAAGGAGGAAAAGTGGGTGGGGCAGGAGCCTCTAAATCAAAGAAGGCTGATGATGATgaggacgatgatgatgatgaggacgaCGATGATGAGGacgaggatgaggatgaggaggatgattaATCATCTTTGACAAATTAGAAAATGGTATTGTGTTTGGATAAGACACTGGCTGGTGAGCAGACTCATCTGTAGGGTTCAATTGTCCTAGACCAAAACATCAAAGTGGTTTGAAACTGTTTTCTCCCTGTAGTTACTTTGTTTGTCCTTTGGGTCTTTAACACTGTGCTCTCAGTGTTCTCCTTATCCCTTTTGTTTTTCTCAGTTGAACAAGCCTATTTAAAGCAATAGCCTAAGAGTTCATACCCTTTAACTCCTAAAAGATGTGTAAGGTGGCGTGTGTGTGCTACCATATGGCTAttgaaatagattttatttaattGTTCTATTTTATTGGGATGTTCATTTCAAGGAATTGTAAGTTTGTGTTTAAGGGACTTGAACCAGTGTTTATCTGTATCTAGACACACAATCCATAGACTTCAGGCAGATGTCCAGTCTGACAACCAGGTATTTAACATTGCCCTGACCTATTATAACAAACACCTGTGCTTGAAGCAGGGCTGATCCATTTCACTTTGTAATGGCTGAAAGGAATGActtagtttttttttcttttcattcGGTTAAGTGGAATGACTTAGATGTGAGGATGTCTCCCTCTTGACTGACATTGACACTACATCTGGATGAGTTTGGACTTTCTTTCCACCTGCAATTTTGTTTTGTATGTTTAGGATACCTCTGGTTTAAAATAAATAACTACATTTTTACGTTC

Function

NR:

description
PREDICTED: high mobility group protein B3-like isoform X1

GO: NA

KEGG:

id description
K11296 HMGB3; high mobility group protein B3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021591530.2 True 1527 mRNA 0.43 5 34872715 34876341

Neighbor

gene id symbol gene type direction distance location
cx04a cx04a coding upstream 1813 34869958 ~ 34870902 (+)
LOC110510166 LOC106563673 coding upstream 3220 34864106 ~ 34869495 (+)
LOC110510164 LOC106563716 coding upstream 21889 34846451 ~ 34850826 (+)
LOC110510163 LOC106563675 coding upstream 28224 34826244 ~ 34844491 (+)
si:ch73-362m14.2 LOC106563676 coding upstream 49773 34815706 ~ 34822942 (+)
LOC110510169 NA coding downstream 11507 34887683 ~ 34895727 (+)
LOC118945311 NA coding downstream 11827 34888168 ~ 34891347 (+)
LOC110510170 LOC106563669 coding downstream 37916 34914257 ~ 35005608 (+)
LOC110510179 LOC106563750 coding downstream 578361 35454702 ~ 35465919 (+)
oatx s226a coding downstream 591096 35467437 ~ 35473376 (+)
G2177636 NA non-coding upstream 20586 34851248 ~ 34852129 (+)
G2177629 LOC106563678 non-coding upstream 58857 34809893 ~ 34813858 (+)
G2177562 NA non-coding upstream 64026 34792337 ~ 34808689 (+)
G2177621 NA non-coding upstream 93739 34778727 ~ 34778976 (+)
LOC110510158 LOC106563717 non-coding upstream 95308 34763682 ~ 34782858 (+)
G2177565 NA non-coding downstream 6046 34882387 ~ 34883032 (+)
G2178457 NA non-coding downstream 19858 34896199 ~ 34896628 (+)
G2178461 NA non-coding downstream 22691 34899032 ~ 34899275 (+)
LOC110510159 LOC106563679 other upstream 47170 34784319 ~ 34825545 (+)
G2177424 NA other upstream 411946 34359624 ~ 34460769 (+)
LOC110510132 rin1 other upstream 640532 34227307 ~ 34236487 (+)
LOC110510125 LOC106563697 other upstream 737316 34105921 ~ 34135553 (+)
cxxc5a LOC106563628 other upstream 1637180 33212994 ~ 33235535 (+)
ndufa2 ndua2 other downstream 629507 35505848 ~ 35507048 (+)
G2179418 NA other downstream 975313 35851654 ~ 35856462 (+)
G2179454 LOC106602907 other downstream 1036149 35912490 ~ 35925031 (+)
G2180218 LOC106563757 other downstream 1802230 36678571 ~ 36680297 (+)
G2180378 NA other downstream 2106005 36982346 ~ 36982614 (+)

Expression


Co-expression Network