LOC110510179 (LOC106563750)


Basic Information

Item Value
gene id LOC110510179
gene name LOC106563750
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 35454702 ~ 35465919 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036968008.1
CGATTGGTTGATTGACTGGAAATCATCACAAAAATGGCAGATCCGATGACACAGTCTGGCCAGATCTCGTCCTCTCTGAACGCTTCATCGACAAAAGAATCCACATATTCCGTGATGGAGCTGGTGTACTGGCGGGACCCCAAGAAGTCTGCGGTGGCCTTTGGCATGTCCCTGCTGGTCCTTCTGTCCCTGGCCATCTTCAGCATCATCAGTGTGTTGTCCTACCTGCTGCTTGCCCTGCTCTGTGTCACAATCACCTTCCGCATCTACAAGTCTGTCATTCAGGCAGTGCAGAAGTCTGGAGAGGGCCACCCCTTCAAGGGTCTGATGGAGCAGGACCTAACTGTTCAGCCTGAGACTTTCCGTAAATATGTGGATGTGTTTCTGACCTATGTGAACCGAGCCGTTAAACAGATCAAACACTTGCTGCTGGTGGaggacctggtggactcactcaAGCTGGCTGGTTTTATGTGGCTGATGACATATGTGGGAGCTGTCTTCAATGGCATCACAATCCTCATACTGGCTGATGTCATCTTATTCAGCACGCCTCCGGTTTATGACAAAAATAAAACCCAGATTGATCAATACATTGAACTGATTCGCACCAGAGTTGAAGTCACACTTGCAAAGCTTCAAGATAAACTTCCAGGGGCACTGAAGCGTACCAAAGCAGAGTGATTGTCCATGACCCCTATTCAACAACTGCGCTCTCCCTAATTCTGCAACTTCAGTCCTACCCTTTCAAATGCATTCCCAGCGTCAAACCTGTGGCCAAGTCATCGCTCAATATTCAATGTACCGTAACTAACTTGCAAAGGGTGCAATGCTTGTATTTGTTGTTGGAGTCAGACACATTCTGAATAACTCAATCTGTAGTTGTTACATCCATTTTgtgacttataaatgaatgatatgtacccattaattattgaagaatataatgtataaatgcctcatgagcttagttcaattgtcgtaccccatcagaacctgaaatataaacttgttttactccaatgtttgtaaacaaagtaaatgggaactaacactatatagcctcaaagcATTGGTAGAACTAATGTTGTTATCATGGATTGTTTGTCCTTGCATCCATATCGCTGTCTATGACTTTgacagtggttacatttctccaaccccatATCTCATCTTTTTAACGAAATGGTGGAAGGCGCTTGGTTTCAACTACTGATTGGGGCTTTAACAAATTATTCCTGATTGAGCCAGGGGGAACTTTTAATTATTTCAAGGATACAGAATGGTGtatagcttttatttatttttttttaaagcaaatgtTTGTACACTAATCtggttagtttttttttttttttgagggaaAAGTAATTTGTTGGTTTAGTTTGTGAATTGGCAtaaaataaagatttttttttacatttttatttatgaaAGAACTCAAAGCTGGGATCCAGATTAGGTGAGACTGCATCACTGGTGTCTCGgttatggattttttttaaaccgGGCAGAGGAGCATTCTGAGTCGTGGTAATAAAGAAAGTGACCTTCTGCTGTTCTATCATGTGTGCAATGATGTCTGATGGGGGGGAAAAATGAATTGTTTGACGTAATGTCTTTGTTTGGAGGGGGCACTCAACCAATTCAGCATCATCTCAGTTCATCCTATAGGACACTTGTTTGCTATCTGCACTGAGTATTTTGCAAGCAAGTCCTCAAACTTGAAATAAAAAGGAAAGAAACCGTCGCAA
>XM_036968007.1
AAAATGAACTCAGGATTTTTTAAACAATTATTTTGAAAATAGTAGCATAAGTAAACCACTGTATAAATATGCGGTATAAGGTAATGATACTGACTAGACCATATTGAGACCACACCTTTAAAGCCAAGCCCCCCCTTCGTGGTGAAGGCACGTCCATCGTTGTGCTCCGAAACATCATTTTCAAGGCGTCAAACGGGCTTGAGGAGTCAATTTAGCAAATCATCACAAAAATGGCAGATCCGATGACACAGTCTGGCCAGATCTCGTCCTCTCTGAACGCTTCATCGACAAAAGAATCCACATATTCCGTGATGGAGCTGGTGTACTGGCGGGACCCCAAGAAGTCTGCGGTGGCCTTTGGCATGTCCCTGCTGGTCCTTCTGTCCCTGGCCATCTTCAGCATCATCAGTGTGTTGTCCTACCTGCTGCTTGCCCTGCTCTGTGTCACAATCACCTTCCGCATCTACAAGTCTGTCATTCAGGCAGTGCAGAAGTCTGGAGAGGGCCACCCCTTCAAGGGTCTGATGGAGCAGGACCTAACTGTTCAGCCTGAGACTTTCCGTAAATATGTGGATGTGTTTCTGACCTATGTGAACCGAGCCGTTAAACAGATCAAACACTTGCTGCTGGTGGaggacctggtggactcactcaAGCTGGCTGGTTTTATGTGGCTGATGACATATGTGGGAGCTGTCTTCAATGGCATCACAATCCTCATACTGGCTGATGTCATCTTATTCAGCACGCCTCCGGTTTATGACAAAAATAAAACCCAGATTGATCAATACATTGAACTGATTCGCACCAGAGTTGAAGTCACACTTGCAAAGCTTCAAGATAAACTTCCAGGGGCACTGAAGCGTACCAAAGCAGAGTGATTGTCCATGACCCCTATTCAACAACTGCGCTCTCCCTAATTCTGCAACTTCAGTCCTACCCTTTCAAATGCATTCCCAGCGTCAAACCTGTGGCCAAGTCATCGCTCAATATTCAATGTACCGTAACTAACTTGCAAAGGGTGCAATGCTTGTATTTGTTGTTGGAGTCAGACACATTCTGAATAACTCAATCTGTAGTTGTTACATCCATTTTgtgacttataaatgaatgatatgtacccattaattattgaagaatataatgtataaatgcctcatgagcttagttcaattgtcgtaccccatcagaacctgaaatataaacttgttttactccaatgtttgtaaacaaagtaaatgggaactaacactatatagcctcaaagcATTGGTAGAACTAATGTTGTTATCATGGATTGTTTGTCCTTGCATCCATATCGCTGTCTATGACTTTgacagtggttacatttctccaaccccatATCTCATCTTTTTAACGAAATGGTGGAAGGCGCTTGGTTTCAACTACTGATTGGGGCTTTAACAAATTATTCCTGATTGAGCCAGGGGGAACTTTTAATTATTTCAAGGATACAGAATGGTGtatagcttttatttatttttttttaaagcaaatgtTTGTACACTAATCtggttagtttttttttttttttgagggaaAAGTAATTTGTTGGTTTAGTTTGTGAATTGGCAtaaaataaagatttttttttacatttttatttatgaaAGAACTCAAAGCTGGGATCCAGATTAGGTGAGACTGCATCACTGGTGTCTCGgttatggattttttttaaaccgGGCAGAGGAGCATTCTGAGTCGTGGTAATAAAGAAAGTGACCTTCTGCTGTTCTATCATGTGTGCAATGATGTCTGATGGGGGGGAAAAATGAATTGTTTGACGTAATGTCTTTGTTTGGAGGGGGCACTCAACCAATTCAGCATCATCTCAGTTCATCCTATAGGACACTTGTTTGCTATCTGCACTGAGTATTTTGCAAGCAAGTCCTCAAACTTGAAATAAAAAGGAAAGAAACCGTCGCAA
>XM_036968009.1
CCCACAATAGTTCGTTTGTTCACCCAGTTGATCTCTGACCAATGTTATGTAGCTACGGTATTGTCAGTTTAGGGACATACCAAGGATCCCGGGTAGCAGCGACCGCGAGCACATGGCCCTGTTTGAAGGCTTTTTAAAATGGTTCTAATCACCCTGACAAGGATTGGACCAAGGAAGGCATGGTTACCATCCCTTTGCTTTCATTAATCAAACCAACCATGTCAGCTCAGTGGTTTCGTCAAGGAAATTGATGGAGCTGGTGTACTGGCGGGACCCCAAGAAGTCTGCGGTGGCCTTTGGCATGTCCCTGCTGGTCCTTCTGTCCCTGGCCATCTTCAGCATCATCAGTGTGTTGTCCTACCTGCTGCTTGCCCTGCTCTGTGTCACAATCACCTTCCGCATCTACAAGTCTGTCATTCAGGCAGTGCAGAAGTCTGGAGAGGGCCACCCCTTCAAGGGTCTGATGGAGCAGGACCTAACTGTTCAGCCTGAGACTTTCCGTAAATATGTGGATGTGTTTCTGACCTATGTGAACCGAGCCGTTAAACAGATCAAACACTTGCTGCTGGTGGaggacctggtggactcactcaAGCTGGCTGGTTTTATGTGGCTGATGACATATGTGGGAGCTGTCTTCAATGGCATCACAATCCTCATACTGGCTGATGTCATCTTATTCAGCACGCCTCCGGTTTATGACAAAAATAAAACCCAGATTGATCAATACATTGAACTGATTCGCACCAGAGTTGAAGTCACACTTGCAAAGCTTCAAGATAAACTTCCAGGGGCACTGAAGCGTACCAAAGCAGAGTGATTGTCCATGACCCCTATTCAACAACTGCGCTCTCCCTAATTCTGCAACTTCAGTCCTACCCTTTCAAATGCATTCCCAGCGTCAAACCTGTGGCCAAGTCATCGCTCAATATTCAATGTACCGTAACTAACTTGCAAAGGGTGCAATGCTTGTATTTGTTGTTGGAGTCAGACACATTCTGAATAACTCAATCTGTAGTTGTTACATCCATTTTgtgacttataaatgaatgatatgtacccattaattattgaagaatataatgtataaatgcctcatgagcttagttcaattgtcgtaccccatcagaacctgaaatataaacttgttttactccaatgtttgtaaacaaagtaaatgggaactaacactatatagcctcaaagcATTGGTAGAACTAATGTTGTTATCATGGATTGTTTGTCCTTGCATCCATATCGCTGTCTATGACTTTgacagtggttacatttctccaaccccatATCTCATCTTTTTAACGAAATGGTGGAAGGCGCTTGGTTTCAACTACTGATTGGGGCTTTAACAAATTATTCCTGATTGAGCCAGGGGGAACTTTTAATTATTTCAAGGATACAGAATGGTGtatagcttttatttatttttttttaaagcaaatgtTTGTACACTAATCtggttagtttttttttttttttgagggaaAAGTAATTTGTTGGTTTAGTTTGTGAATTGGCAtaaaataaagatttttttttacatttttatttatgaaAGAACTCAAAGCTGGGATCCAGATTAGGTGAGACTGCATCACTGGTGTCTCGgttatggattttttttaaaccgGGCAGAGGAGCATTCTGAGTCGTGGTAATAAAGAAAGTGACCTTCTGCTGTTCTATCATGTGTGCAATGATGTCTGATGGGGGGGAAAAATGAATTGTTTGACGTAATGTCTTTGTTTGGAGGGGGCACTCAACCAATTCAGCATCATCTCAGTTCATCCTATAGGACACTTGTTTGCTATCTGCACTGAGTATTTTGCAAGCAAGTCCTCAAACTTGAAATAAAAAGGAAAGAAACCGTCGCAA
>XM_036968006.1
CTGGTGCCCAAATGGATGGCGTATGTCATGCGGCGTAGTGTGGCGACGAATGGATTCGGTTCAGTCAGTTGTTCTGATCAGCCCTTCCAGCTAGAAATGCTGGCTACTGGCAGCAGCATGGCACTAGTTACTTGTAAAATGATGGAGCTGGTGTACTGGCGGGACCCCAAGAAGTCTGCGGTGGCCTTTGGCATGTCCCTGCTGGTCCTTCTGTCCCTGGCCATCTTCAGCATCATCAGTGTGTTGTCCTACCTGCTGCTTGCCCTGCTCTGTGTCACAATCACCTTCCGCATCTACAAGTCTGTCATTCAGGCAGTGCAGAAGTCTGGAGAGGGCCACCCCTTCAAGGGTCTGATGGAGCAGGACCTAACTGTTCAGCCTGAGACTTTCCGTAAATATGTGGATGTGTTTCTGACCTATGTGAACCGAGCCGTTAAACAGATCAAACACTTGCTGCTGGTGGaggacctggtggactcactcaAGCTGGCTGGTTTTATGTGGCTGATGACATATGTGGGAGCTGTCTTCAATGGCATCACAATCCTCATACTGGCTGATGTCATCTTATTCAGCACGCCTCCGGTTTATGACAAAAATAAAACCCAGATTGATCAATACATTGAACTGATTCGCACCAGAGTTGAAGTCACACTTGCAAAGCTTCAAGATAAACTTCCAGGGGCACTGAAGCGTACCAAAGCAGAGTGATTGTCCATGACCCCTATTCAACAACTGCGCTCTCCCTAATTCTGCAACTTCAGTCCTACCCTTTCAAATGCATTCCCAGCGTCAAACCTGTGGCCAAGTCATCGCTCAATATTCAATGTACCGTAACTAACTTGCAAAGGGTGCAATGCTTGTATTTGTTGTTGGAGTCAGACACATTCTGAATAACTCAATCTGTAGTTGTTACATCCATTTTgtgacttataaatgaatgatatgtacccattaattattgaagaatataatgtataaatgcctcatgagcttagttcaattgtcgtaccccatcagaacctgaaatataaacttgttttactccaatgtttgtaaacaaagtaaatgggaactaacactatatagcctcaaagcATTGGTAGAACTAATGTTGTTATCATGGATTGTTTGTCCTTGCATCCATATCGCTGTCTATGACTTTgacagtggttacatttctccaaccccatATCTCATCTTTTTAACGAAATGGTGGAAGGCGCTTGGTTTCAACTACTGATTGGGGCTTTAACAAATTATTCCTGATTGAGCCAGGGGGAACTTTTAATTATTTCAAGGATACAGAATGGTGtatagcttttatttatttttttttaaagcaaatgtTTGTACACTAATCtggttagtttttttttttttttgagggaaAAGTAATTTGTTGGTTTAGTTTGTGAATTGGCAtaaaataaagatttttttttacatttttatttatgaaAGAACTCAAAGCTGGGATCCAGATTAGGTGAGACTGCATCACTGGTGTCTCGgttatggattttttttaaaccgGGCAGAGGAGCATTCTGAGTCGTGGTAATAAAGAAAGTGACCTTCTGCTGTTCTATCATGTGTGCAATGATGTCTGATGGGGGGGAAAAATGAATTGTTTGACGTAATGTCTTTGTTTGGAGGGGGCACTCAACCAATTCAGCATCATCTCAGTTCATCCTATAGGACACTTGTTTGCTATCTGCACTGAGTATTTTGCAAGCAAGTCCTCAAACTTGAAATAAAAAGGAAAGAAACCGTCGCAA

Function

NR:

description
reticulon-3-like

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036968008.1 False 1754 mRNA 0.42 8 35454702 35465919
XM_036968007.1 False 1951 mRNA 0.41 8 35454753 35465919
XM_036968009.1 False 1890 mRNA 0.42 7 35455567 35465919
XM_036968006.1 True 1781 mRNA 0.42 7 35456226 35465919

Neighbor

gene id symbol gene type direction distance location
LOC110510170 LOC106563669 coding upstream 491744 34914257 ~ 35005608 (+)
LOC110510169 NA coding upstream 558975 34887683 ~ 34895727 (+)
LOC118945311 NA coding upstream 563355 34888168 ~ 34891347 (+)
LOC110510168 LOC106602948 coding upstream 578361 34872715 ~ 34876341 (+)
cx04a cx04a coding upstream 583800 34869958 ~ 34870902 (+)
oatx s226a coding downstream 1518 35467437 ~ 35473376 (+)
LOC110510177 LOC106563746 coding downstream 7733 35473652 ~ 35492191 (+)
LOC110510182 NA coding downstream 26711 35492630 ~ 35495280 (+)
ndufa2 ndua2 coding downstream 39932 35505848 ~ 35507048 (+)
arsib LOC106602937 coding downstream 62252 35528171 ~ 35536303 (+)
G2178916 NA non-coding upstream 53729 35399340 ~ 35400973 (+)
G2178964 NA non-coding upstream 64184 35390268 ~ 35390518 (+)
G2178960 NA non-coding upstream 80448 35373952 ~ 35374254 (+)
G2178955 NA non-coding upstream 89627 35364743 ~ 35365075 (+)
G2178948 NA non-coding upstream 106336 35347954 ~ 35348366 (+)
G2179002 NA non-coding downstream 51924 35517843 ~ 35521611 (+)
G2179001 NA non-coding downstream 52530 35518449 ~ 35520120 (+)
G2179014 NA non-coding downstream 70544 35536463 ~ 35542879 (+)
G2179053 NA non-coding downstream 114559 35580478 ~ 35581561 (+)
LOC110510159 LOC106563679 other upstream 629157 34784319 ~ 34825545 (+)
G2177424 NA other upstream 993933 34359624 ~ 34460769 (+)
LOC110510132 rin1 other upstream 1222519 34227307 ~ 34236487 (+)
LOC110510125 LOC106563697 other upstream 1319303 34105921 ~ 34135553 (+)
cxxc5a LOC106563628 other upstream 2219167 33212994 ~ 33235535 (+)
G2179418 NA other downstream 385735 35851654 ~ 35856462 (+)
G2179454 LOC106602907 other downstream 446571 35912490 ~ 35925031 (+)
G2180218 LOC106563757 other downstream 1212652 36678571 ~ 36680297 (+)
G2180378 NA other downstream 1516427 36982346 ~ 36982614 (+)

Expression


Co-expression Network