LOC110510182


Basic Information

Item Value
gene id LOC110510182
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 35492630 ~ 35495280 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005040473.1
catacacgtcgatccagagcatccaaaacattctcaatgtgtgacatgtctggtgagtatgtaggccatggtagaactgggacattttcagcttccaggaattgtgtacagatccttgtgacatagTGCCTGCATTATTATGCTGATAACAAGCTGAGTTTTAAAGAGAATGcagactgtatttttttttaaagcaagccAACACCTGTTCTTAATCAGGAAATTAAAGGGGTTTGGGTTCAGCCAGGATGTTCTGGAGAAGGTGTACAGCAGCTTGGTGGAGAGCATCCTcatgttcaatatgacagtctgctATGGTAAGGAGCAAAAGCAAACTGACCAGAATAGTACACACAGTCAGCAAAGTAATTGGTCGACCACAGGCACACTTGAGCATTCTATTCCACAAGGCAACCAAACAGAAGACACTGGCTGTCGTTGGcgacccctcccaccctctacacCCTCAGTTGGAGACCCTACCCACCCTCATTTGGagacccctcccaccctctacaccctcagttggagacccctcccaccctctacacCCTCAGTTCAAGAGGCTTCCCTCGGGCCGGCTCTTCAGAATGCCCATGGCCAAGAAGAACATGTTCAAACATTCATTCCTTCCTTGTGCTGTTGGACTACTAAATACAAAATTAAAGGTATCGGAATATGTACTTATCTAGTGCAGTTGGGACAGTGGTCATTTGAgtgaatgtattaatgtcctCAATGTTGTTAGTGTATGCAACATGATGGACTGACTGGTTTaaatgtgtatgatgtgagaatgtatgtgaTTATTTTAATGGAAGGTGATGTCAAAGTTTTATTCTATTCTAAACACGAGGTGATGGTTGAAAGGCACGACAATGGATCTCGTCACGGCAATTTGAAAGCAGAAATGCCATTGTGTTCGttatccgtagcttatgcctgcccataccataaccccacctccaccatggggcactgggGTTCACtaagttgacatcagcaaaccgctcgccatacggtctacggttgtgaggccggttgggcaTAATTCTTTAAAACAACGTTGGGGGCAGCTTAAGGTAGAgacatgaacattaaattctctggcaacagctctggtggacattcctgcagtcatcatgccccCTCAAagcatctgtggtattgtgttgtgacaaaactgcacattttactggcctttttgtccccagcacctgtgtaatgatcatgctgttgaatcagcttcttgGCCACACCTgacaggtagatggattatcttggcaaagtagaaatgctcactaacaggaatgtaaacaaatctgTGTACAATATTTCTGAGCATATGGAACatattatttcagctcatgaaacatgggaccaacactttttacatgttgggtttatttttgttcaggagtacaaatgtaGTTAAgtcataagttgcatggactctgtgcaatagtgtttaacactgactacctcatctctgtaccccacacccAGATAATTGTAAGgcccctcagtcaagcagtgaatttcatacacagattcaaccacaaagaccagggagattttccaattcctcgcaaagggcacctatatgtataaaaaatgtaaaaagcagtcattttgagcacggtgaagttaattacactttggatggtgtatcaatacactgtcactacaaagacacaggtgtcCTTCATAACTCAGATGAAGGAAACTGCTcagtgatttcaccatgaggccaaatggtgactttaaaacggtTAGTGTTTAATGGAGCAACAGCGTTGTAGTTACTAACCCAACTGACAAGAGTGAAacgaaagcctgtacagaattagAATATTCCTTTTTGCAACAAGGCAATAAAGTTATACTGcaataaatgtggcaaagaacAAGTGAATTTATGTTTGGGGCTAATCCAATACCTTACAGAGCATCTCACGCCATATTTTCAAGGATAGTGCTGGCTGCATCATGGTTATGGGTATGGCTTGTAATAGTTGGGGAGTTAAGATACAAAAAGTAAACGGAATGGAgataagcacaagcaaaatcctagaggaaaacttggttcagtctgctttccaccagacactgggagattaacctttcagcaggacaataacctaaaacacaaagccaaatctacactggagttgcttaccaagacagtgaatgtccctgagtggcttAAGtagttgacttaaatctgcttgtaAGTTTATgggaagacctgaaaatggttgtctaacaatgatcaTCAACCAATTTGACAGCACTTAATAAAGATTGTCAAATGTtggacaatccaggtgtggaaaacttcccagaaagactcacagctgtaatcgctgccaaaggtgattctatcATGTATTTATGTACTCAGGTGGTTGAATATTTAtctaatatgttttttttttttttcaaatgttagaatttttctactttgacagagtattttgtgtagatctacactaacaaaatgtggaaaaagtcaagtgtttGTCGTATGATATTTCTTAGAAATAAAATGTATGACAAAGCAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005040473.1 True 2564 mRNA 0.41 2 35492630 35495280

Neighbor

gene id symbol gene type direction distance location
LOC110510177 LOC106563746 coding upstream 439 35473652 ~ 35492191 (+)
oatx s226a coding upstream 19254 35467437 ~ 35473376 (+)
LOC110510179 LOC106563750 coding upstream 26711 35454702 ~ 35465919 (+)
LOC110510170 LOC106563669 coding upstream 529672 34914257 ~ 35005608 (+)
LOC110510169 NA coding upstream 596903 34887683 ~ 34895727 (+)
ndufa2 ndua2 coding downstream 10571 35505848 ~ 35507048 (+)
arsib LOC106602937 coding downstream 32891 35528171 ~ 35536303 (+)
camk2a LOC106563741 coding downstream 61460 35556740 ~ 35655280 (+)
LOC110509382 LOC106563739 coding downstream 208766 35704046 ~ 35708070 (+)
LOC118945339 LOC106563737 coding downstream 220138 35715418 ~ 35716311 (+)
G2178916 NA non-coding upstream 91657 35399340 ~ 35400973 (+)
G2178964 NA non-coding upstream 102112 35390268 ~ 35390518 (+)
G2178960 NA non-coding upstream 118376 35373952 ~ 35374254 (+)
G2178955 NA non-coding upstream 127555 35364743 ~ 35365075 (+)
G2178948 NA non-coding upstream 144264 35347954 ~ 35348366 (+)
G2179002 NA non-coding downstream 22563 35517843 ~ 35521611 (+)
G2179001 NA non-coding downstream 23169 35518449 ~ 35520120 (+)
G2179014 NA non-coding downstream 41183 35536463 ~ 35542879 (+)
G2179053 NA non-coding downstream 85198 35580478 ~ 35581561 (+)
LOC110510159 LOC106563679 other upstream 667085 34784319 ~ 34825545 (+)
G2177424 NA other upstream 1031861 34359624 ~ 34460769 (+)
LOC110510132 rin1 other upstream 1260447 34227307 ~ 34236487 (+)
LOC110510125 LOC106563697 other upstream 1357231 34105921 ~ 34135553 (+)
cxxc5a LOC106563628 other upstream 2257095 33212994 ~ 33235535 (+)
G2179418 NA other downstream 356374 35851654 ~ 35856462 (+)
G2179454 LOC106602907 other downstream 417210 35912490 ~ 35925031 (+)
G2180218 LOC106563757 other downstream 1183291 36678571 ~ 36680297 (+)
G2180378 NA other downstream 1487066 36982346 ~ 36982614 (+)

Expression


Co-expression Network