LOC110521569


Basic Information

Item Value
gene id LOC110521569
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 23082101 ~ 23084793 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005040936.1
CCACCCTTTCATcggtctccttctcctctccgaTCCTGAAGAGAGGTATTGCTGAGAAGCAAAGCACAAGTTGGAAGATTCAAAATGAGCTGCAGCCAAGTTGTGGCATTGGAAGCCAATGGAAATTAGTCATGTGACTGAAACTTTGACAAAGAACTCAAGTTTCTGACCATGCTGCGATGGGATCCTGGAGTCTCAAGTCTAGTTTGGCTGTTAATTTAGGACCCAGATGCAGAAACAGGATTTGGTGTTGCAAGAAGGCAGACTGAATGGATACTGGGCGTAAAGGATTGGATGTAGAGCTGTCCCTGTCAGGTGGCCAGTGAATTTACAACTGCCAGTGTAGTTAAGAATGAGAAATGATGACGCTATCAAGAGATGCAGTGGGAGACATCCATGATTTCAGACTACATTTATCCTGGGTGGTTACTGATTTCGACTATCAATAAAATGTGTGCACTTA
>XR_002473171.2
TGCGAATACATTCCATATAAATTCAGCCTCCACCCTTTCATcggtctccttctcctctccgaTCCTGAAGAGAGGTATTGCTGAGAAGCAAAGCACAAGTTGGAAGATTCAAAATGAGCTGCAGCCAAGTTGTGGCATTGGATGGTGTACTCTGGGAATGCCAATATCTGAAACTGTTGCCGTGAAGCCAATGGAAATTAGTCATGTGACTGAAACTTTGACAAAGAACTCAAGTTTCTGACCATGCTGCGATGGGATCCTGGAGTCTCAAGTCTAGTTTGGCTGTTAATTTAGGACCCAGATGCAGAAACAGGATTTGGTGTTGCAAGAAGGCAGACTGAATGGATACTGGGCGTAAAGGATTGGATGTAGAGCTGTCCCTGTCAGGTGGCCAGTGAATTTACAACTGCCAGTGTAGTTAAGAATGAGAAATGATGACGCTATCAAGAGATGCAGTGGGAGACATCCATGATTTCAGACTACATTTATCCTGGGTGGTTACTGATTTCGACTATCAATAAAATGTGTGCACTTA
>TU2532210
cctctccgaTCCTGAAGAGAGGTATTGCTGAGAAGCAAAGCACAAGTTGGAAGATTCAAAATGAGCTGCAGCCAAGTTGTGGCATTGGATGGTGTACTCTGGGAATGCCAATATCTGAAACTGTTGCCGTGAAGCCAATGGAAATTAGTCATGTGACTGAAACTTTGACAAAGAACTCAAGTTTCTGACCATGCTGCGATGGGATCCTGGAGTCTCAAGTCTAGTTTGGCTGTTAATTTAGGACCCAGATGCAGAAACAGGATTTGGTGTTGCAAGAAGGCAGACTGAATGGATACTGGGCGTAAAGGATTGGATGTAGAGCTGTCCCTGTCAGGTGGCCAGTGAATTTACAACTGCCAGTGTAGTTAAGAATGAGAAATGATGACGCTATCAAGAGATGCAGTGGGAGACATCCATGATTTCAGACTACATTTATCCTGGGTGGTTACTGATTTCGACTATCAATAAAATGTGTGCACTTA
>TU2532211
cctctccgaTCCTGAAGAGAGGTATTGCTGAGAAGCAAAGCACAAGTTGGAAGATTCAAAATGAGCTGCAGCCAAGTTGTGGCATTGGAAGCCAATGGAAATTAGTCATGTGACTGAAACTTTGACAAAGAACTCAAGTTTCTGACCATGCTGCGATGGGATCCTGGAGTCTCAAGTCTAGTTTGGCTGTTAATTTAGGACCCAGATGCAGAAACAGGATTTGGTGTTGCAAGAAGGCAGACTGAATGGATACTGGGCGTAAAGGATTGGATGTAGAGCTGTCCCTGTCAGGTGGCCAGTGAATTTACAACTGCCAGTGTAGTTAAGAATGAGAAATGATGACGCTATCAAGAGATGCAGTGGGAGACATCCATGATTTCAGACTACATTTATCCTGGGTGGTTACTGATTTCGACTATCAATAAAATGTGTGCACTTA
>TU2532212
cctctccgaTCCTGAAGAGAGGTATTGCTGAGAAGCAAAGCACAAGTTGGAAGATTCAAAATGAGAAGCCAATGGAAATTAGTCATGTGACTGAAACTTTGACAAAGAACTCAAGTTTCTGACCATGCTGCGATGGGATCCTGGAGTCTCAAGTCTAGTTTGGCTGTTAATTTAGGACCCAGATGCAGAAACAGGATTTGGTGTTGCAAGAAGGCAGACTGAATGGATACTGGGCGTAAAGGATTGGATGTAGAGCTGTCCCTGTCAGGTGGCCAGTGAATTTACAACTGCCAGTGTAGTTAAGAATGAGAAATGATGACGCTATCAAGAGATGCAGTGGGAGACATCCATGATTTCAGACTACATTTATCCTGGGTGGTTACTGATTTCGACTATCAATAAAATGTGTGCACTTA
>TU2532213
AGTCAACGAGTACCCCGGCAAGCTGGGCCTCCCTTTCCTACATGATGAATAAGTGTTGGTAGGGACATCTGAGTTGCATTGAGGAAACGCCAACCATTCTGACTTGGATCATACTTAATTACCTAGTGTCACTATTACTGCACTGTCCTAGTTATTCCATTTACGTTTTATCAAAGGACAGTTTTTGCAGATCTGATTGTGTTTCGCAGGTATTGCTGAGAAGCAAAGCACAAGTTGGAAGATTCAAAATGAGCTGCAGCCAAGTTGTGGCATTGGATGGTGTACTCTGGGAATGCCAATATCTGAAACTGTTGCCGTGAAGCCAATGGAAATTAGTCATGTGACTGAAACTTTGACAAAGAACTCAAGTTTCTGACCATGCTGCGATGGGATCCTGGAGTCTCAAGTCTAGTTTGGCTGTTAATTTAGGACCCAGATGCAGAAACAGGATTTGGTGTTGCAAGAAGGCAGACTGAATGGATACTGGGCGTAAAGGATTGGATGTAGAGCTGTCCCTGTCAGGTGGCCAGTGAATTTACAACTGCCAGTGTAGTTAAGAATGAGAAATGATGACGCTATCAAGAGATGCAGTGGGAGACATCCATGATTTCAGACTACATTTATCCTGGGTGGTTACTGATTTCGACTATCAATAAAATGTGTGCACTTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005040936.1 False 463 mRNA 0.44 9 23082101 23084764
XR_002473171.2 False 535 mRNA 0.44 10 23082101 23084793
TU2532210 False 482 lncRNA 0.44 10 23082101 23084740
TU2532211 False 439 lncRNA 0.44 9 23082101 23084740
TU2532212 False 416 lncRNA 0.43 8 23082101 23084740
TU2532213 True 670 lncRNA 0.43 9 23082101 23084375

Neighbor

gene id symbol gene type direction distance location
LOC110521568 LOC106584322 coding downstream 8032 23071673 ~ 23074069 (-)
calr LOC106584323 coding downstream 15132 23062485 ~ 23066969 (-)
LOC110521566 LOC106584324 coding downstream 19826 23028618 ~ 23062275 (-)
LOC110521565 LOC106584325 coding downstream 56645 23001827 ~ 23025456 (-)
LOC110521564 LOC106584326 coding downstream 80795 22982517 ~ 23008109 (-)
LOC110521570 LOC106584321 coding upstream 2920 23087713 ~ 23122787 (-)
LOC110521572 LOC106584319 coding upstream 39080 23123873 ~ 23159173 (-)
LOC118945817 LOC106613908 coding upstream 85540 23170333 ~ 23177766 (-)
LOC110522764 LOC106584318 coding upstream 124049 23208842 ~ 23305375 (-)
LOC110521577 LOC106584314 coding upstream 390799 23475592 ~ 23508733 (-)
G2213607 NA non-coding downstream 6330 23075467 ~ 23075771 (-)
G2213606 NA non-coding downstream 6797 23075098 ~ 23075304 (-)
G2213589 NA non-coding downstream 55736 23026136 ~ 23026365 (-)
G2213537 NA non-coding downstream 67577 22923252 ~ 23014524 (-)
G2213636 NA non-coding upstream 74638 23159431 ~ 23159734 (-)
G2213640 NA non-coding upstream 79483 23164276 ~ 23164568 (-)
G2213660 NA non-coding upstream 104822 23189615 ~ 23190071 (-)
G2213647 NA non-coding upstream 112854 23197647 ~ 23199406 (-)
G2213649 NA non-coding upstream 114890 23199683 ~ 23200149 (-)
G2212908 LOC106613883 other downstream 1171365 21907963 ~ 21910736 (-)
G2212755 NA other downstream 1415486 21665964 ~ 21666615 (-)
G2211274 ttc14 other downstream 1775559 21304841 ~ 21306542 (-)
G2210769 NA other downstream 2558990 20518340 ~ 20523111 (-)
G2213654 NA other upstream 93713 23178506 ~ 23179611 (-)
G2217605 NA other upstream 2832561 25917354 ~ 25920245 (-)
G2217805 prrc2c other upstream 3151892 26236685 ~ 26237398 (-)
G2217824 NA other upstream 3183553 26268346 ~ 26341495 (-)

Expression


Co-expression Network