LOC118945817 (LOC106613908)


Basic Information

Item Value
gene id LOC118945817
gene name LOC106613908
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 23170333 ~ 23177766 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036969361.1
GTGGACTACCAGTAAGGAGGCTTATTGTGTCTTTTGATCCAAATTAGAAACAGTAACTGAATCATTTAGAATgcagtgtacagtatataatgGATCTATGTAAATGCAAGGCCCCATTTATGTTACAGGGGAAATCAGGTCTTCCTGGCCGTCCAAGAAATAGGCGACCTGAATCCCTTGGAAAAAATAATACGATTTTAAAAACAAAACCGGACCATGACCAGGAGAACGCTTGACTCATTCCCTGACCATCACTCAAGCAGCTCCTTCAGCTGGCCTCAGGGCACCAAAGACAGCCCTGCAACCACCTGCAACAAGCTGGGGCTGATTCATCCACACCTGCAGGATGGAAACGTTTACGTGACCCTAACCAGGGCTGCCTGTTTGATGCCCTGCAAGTGTACCTGTAACTTCACTGTAGGAGGGATGACCTGTATACCTCCTGTGTTGTCACAAGTGGAGGTACGAGTATGGGGGAGCACAGAGATCCATAGAGGGGACTTGGAGCTGTTGCCCCTCAGGGACGTTAGTGCAGAGGGAAGGGGAGATCACTGAGACACAGACCTCAGAGCTGTCCTGGGACCTTTGTGCTTTTTGTAGCCTCCATTTATCCAGAGAGAAGAAGCAAGCACTGCCCAGTGTATGGGGCAAGATCATTTGGCTGCAATTCCTCATCTGGACAAAAGAATGTTGTCTCATCATGTTGTCTGTTCGCTGTAGCGCTTATGTATAATTGCGATAATAActagctgtactgtatgatgaaatatgtattttggagagattgataTAATGTGTATTTTATAAAGAAAAATATATAGCTGTTGTGTTGTTTGTATCTCCTGCATAtcgattattttttatttattcatttctcagtgatgtactgtgtgTGCTAATATATGCTTCATATTTGATTAATGTGGAGGTTTTAAGAATGTAATGTActcatttgtattttattgtttAAGCGTTTGTAAATATGTCTTTGCTAATA
>XR_005040975.1
catgatgaatataaaacatcttacctatgttatcaactaattctgattattccccaacacctTGTATCCAGATTGACTCTTGTATATTCATTATCTGTCTTTGCAGGGTGACAGAGGTCCTACCGGTGGACAAAGCGTTGATAGACCTAGAGGCGATAAAGTACTGAAAATTGTTTGCGCTTACTTTTGACATTCATTTGTGGAGTCATTTTGCATATCGTACTTGTTTAGAATTGTTGTGTGAGACGTACTGATGTTTTTGGGGGGAAGGGGGGTTTCACAGGGTGGAGATGGTCGAGGGGGATTTTCTGGTTTGCCAGGCCCTTTTGTAAATGGAAATAGTCTGTTTAATTTGATGGATAATTCTTATCTGACTGTGGCTCAATGTGTCTGCCTTGTCTACAGGGAGAGATTGGAAAATCAGGAAAGAGAGGAGCTGAAGGAGACCTGGTATTAAGGTTCCTGTGGGATGCCAGGAATTCCAGGACTCACTGGACTGAAAGGGCTGAAGGGACCCATTGGAGGAACTGCATCTGATGGGAATTCCGGATCTACCAGACTACGGGGAATGGTGGGGAAAAGTGGAGCAACAGGGATTCAAGGTCCAGTTGGGAAGAGTGGGGATTCTGGAAGTAGAGGAATCACTGGCAACCAGGAAAGCCAGGAGTCAAGGGAGAAGGCCCATTGGGACCGGATGGACCAGTTGGAAGATCTGGAAAGCCAGCAAGTATCCCTATAGGCCACATTGACTATGACACCCAATTACAGCTGCATGATCCTATCACGGAGATGCAATAAACCATGTTGTGATGATGATCCTATTGATGGGACGTTGTTTATTCTATCTTTTGTTTGGGTTGTTATCAcagggacttgctggtttggaTGGATTGTTGGGGGTTGAAGGAAACGAAGGAGATAATGGTGATATTGGTTACAGAGGCACCCCTGGGAGGCCTGGTATGCCAGGGAAGATGGGTCAAATTGGACGAACTGGATTGAGTGGTGGTCATGGAGCACCAGGGTCAAAGGGTAATCATGGATCTAAAGGAAAACAAGCACCTGCAGGGACAATGGGGCAAAGGGGTATTCCAGGGcttggaggagagaaggggacatTTGGCCAGCATGGCTCAAAGGGTCAGAGGCCTTCAGGGACATATTGGACCACGTGGAGTTAAAGGGAATCCAGGACTGCAAGGGAATGAAGGGCGGCTAGGTTCAAAAGGCATACAGGGAGACATTGGTCCGCGCAGTCCACCTGGGAAAAAGGGCTTCCCTGGTCAACCTGATCTGTTTGGAAAGAGAGGATACAAGGTATGCCTGGAGCTAAGGGAGTGAGAGCAAAACCGGACCATGACCAGGAGAACGCTTGACTCATTCCCTGACCATCACTCAAGCAGCTCCTTCAGCTGGCCTCAGGGCACCAAAGACAGCCCTGCAACCACCTGCAACAAGCTGGGGCTGATTCATCCACACCTGCAGGATGGAAACGTTTACGTGACCCTAACCAGGGCTGCCTGTTTGATGCCCTGCAAGTGTACCTGTAACTTCACTGTAGGAGGGATGACCTGTATACCTCCTGTGTTGTCACAAGTGGAGGTACGAGTATGGGGGAGCACAGAGATCCATAGAGGGGACTTGGAGCTGTTGCCCCTCAGGGACGTTAGTGCAGAGGGAAGGGGAGATCACTGAGACACAGACCTCAGAGCTGTCCTGGGACCTTTGTGCTTTTTGTAGCCTCCATTTATCCAGAGAGAAGAAGCAAGCACTGCCCAGTGTATGGGGCAAGATCATTTGGCTGCAATTCCTCATCTGGACAAAAGAATGTTGTCTCATCATGTTGTCTGTTCGCTGTAGCGCTTATGTATAATTGCGATAATAActagctgtactgtatgatgaaatatgtattttggagagattgataTAATGTGTATTTTATAAAGAAAAATATATAGCTGTTGTGTTGTTTGTATCTCCTGCATAtcgattattttttatttattcatttctcagtgatgtactgtgtgTGCTAATATATGCTTCATATTTGATTAATGTGGAGGTTTTAAGAATGTAATGTActcatttgtattttattgtttAAGCGTTTGTAAATATGTCTTTGCTAATA
>XR_005040976.1
catgatgaatataaaacatcttacctatgttatcaactaattctgattattccccaacacctTGTATCCAGATTGACTCTTGTATATTCATTATCTGTCTTTGCAGGGTGACAGAGGTCCTACCGGTGGACAAAGCGTTGATAGACCTAGAGGCGATAAAGTACTGAAAATTGTTTGCGCTTACTTTTGACATTCATTTGTGGAGTCATTTTGCATATCGTACTTGTTTAGAATTGTTGTGTGAGACGTACTGATGTTTTTGGGGGGAAGGGGGGTTTCACAGGGTGGAGATGGTCGAGGGGGATTTTCTGGTTTGCCAGGCCCTTTTGTAAATGGAAATAGTCTGTTTAATTTGATGGATAATTCTTATCTGACTGTGGCTCAATGTGTCTGCCTTGTCTACAGGGAGAGATTGGAAAATCAGGAAAGAGAGGAGCTGAAGGAGACCTGGTATTAAGGTTCCTGTGTAACTACTCTTCTTATTCTGTCTATACAGCTTCCTGTCATTGTCtcagtataatttttttttaaatcaccatCAATCCTATTTTTGGTGAAGAATTGACCTGATATTACAATTGAGATATCCAGACCTCCAGTTGTTTTCCAGTCAGTATGTTTGAGGTATTGTATTTTCATCTGACCCTTGGATTTGAATCACACAGGGGATGCCAGGAATTCCAGGACTCACTGGACTGAAAGGGCTGAAGGTGAAACTTTTACTTCAGGGTGCTGTCTTGCCACACTTGCACATGCTGATATTACCACTAGAGGGCCAGAATTCAAGTGAAAACTCGAGaaaaatggaatggaatggaacatGTCTTTCTTCACTTGGGGACTTCAATGCCATCTTGGGGGGACCCATTGGAGGAACTGCATCTGATGGGAATTCCGGATCTACCAGACTACGGGGAATGGTGGGGAAAAGTGGAGCAACAGGGATTCAAGGTCCAGTTGGGAAGAGTGGGGATTCTGGAAGTAGAGGAATCACTGGCAACCAGGAAAGCCAGGAGTCAAGGGAGAAGGCCCATTGGGACCGGATGGACCAGTTGGAAGATCTGGAAAGCCAGCAAGTATCCCTATAGGCCACATTGACTATGACACCCAATTACAGCTGCATGATCCTATCACGGAGATGCAATAAACCATGTTGTGATGATGATCCTATTGATGGGACGTTGTTTATTCTATCTTTTGTTTGGGTTGTTATCAcagggacttgctggtttggaTGGATTGTTGGGGGTTGAAGGAAACGAAGGAGATAATGGTGATATTGGTTACAGAGGCACCCCTGGGAGGCCTGGTATGCCAGGGAAGATGGGTCAAATTGGACGAACTGGATTGAGTGGTGGTCATGGAGCACCAGGGTCAAAGGGTAATCATGGATCTAAAGGAAAACAAGCACCTGCAGGGACAATGGGGCAAAGGGGTATTCCAGGGcttggaggagagaaggggacatTTGGCCAGCATGGCTCAAAGGGTCAGAGGCCTTCAGGGACATATTGGACCACGTGGAGTTAAAGGGAATCCAGGACTGCAAGGGAATGAAGGGCGGCTAGGTTCAAAAGGCATACAGGGAGACATTGGTCCGCGCAGTCCACCTGGGAAAAAGGGCTTCCCTGGTCAACCTGATCTGTTTGGAAAGAGAGGATACAAGGTATGCCTGGAGCTAAGGGAGTGAGAGCAAAACCGGACCATGACCAGGAGAACGCTTGACTCATTCCCTGACCATCACTCAAGCAGCTCCTTCAGCTGGCCTCAGGGCACCAAAGACAGCCCTGCAACCACCTGCAACAAGCTGGGGCTGATTCATCCACACCTGCAGGATGGAAACGTTTACGTGACCCTAACCAGGGCTGCCTGTTTGATGCCCTGCAAGTGTACCTGTAACTTCACTGTAGGAGGGATGACCTGTATACCTCCTGTGTTGTCACAAGTGGAGGTACGAGTATGGGGGAGCACAGAGATCCATAGAGGGGACTTGGAGCTGTTGCCCCTCAGGGACGTTAGTGCAGAGGGAAGGGGAGATCACTGAGACACAGACCTCAGAGCTGTCCTGGGACCTTTGTGCTTTTTGTAGCCTCCATTTATCCAGAGAGAAGAAGCAAGCACTGCCCAGTGTATGGGGCAAGATCATTTGGCTGCAATTCCTCATCTGGACAAAAGAATGTTGTCTCATCATGTTGTCTGTTCGCTGTAGCGCTTATGTATAATTGCGATAATAActagctgtactgtatgatgaaatatgtattttggagagattgataTAATGTGTATTTTATAAAGAAAAATATATAGCTGTTGTGTTGTTTGTATCTCCTGCATAtcgattattttttatttattcatttctcagtgatgtactgtgtgTGCTAATATATGCTTCATATTTGATTAATGTGGAGGTTTTAAGAATGTAATGTActcatttgtattttattgtttAAGCGTTTGTAAATATGTCTTTGCTAATA
>XR_005040977.1
catgatgaatataaaacatcttacctatgttatcaactaattctgattattccccaacacctTGTATCCAGATTGACTCTTGTATATTCATTATCTGTCTTTGCAGGGTGACAGAGGTCCTACCGGTGGACAAAGCGTTGATAGACCTAGAGGCGATAAAGTACTGAAAATTGTTTGCGCTTACTTTTGACATTCATTTGTGGAGTCATTTTGCATATCGTACTTGTTTAGAATTGTTGTGTGAGACGTACTGATGTTTTTGGGGGGAAGGGGGGTTTCACAGGGTGGAGATGGTCGAGGGGGATTTTCTGGTTTGCCAGGCCCTTTTGTAAATGGAAATAGTCTGTTTAATTTGATGGATAATTCTTATCTGACTGTGGCTCAATGTGTCTGCCTTGTCTACAGGGAGAGATTGGAAAATCAGGAAAGAGAGGAGCTGAAGGAGACCTGGTATTAAGGTTCCTGTGGGATGCCAGGAATTCCAGGACTCACTGGACTGAAAGGGCTGAAGGTGAAACTTTTACTTCAGGGTGCTGTCTTGCCACACTTGCACATGCTGATATTACCACTAGAGGGCCAGAATTCAAGTGAAAACTCGAGaaaaatggaatggaatggaacatGTCTTTCTTCACTTGGGGACTTCAATGCCATCTTGGGGGGACCCATTGGAGGAACTGCATCTGATGGGAATTCCGGATCTACCAGACTACGGGGAATGGTGGGGAAAAGTGGAGCAACAGGGATTCAAGGTCCAGTTGGGAAGAGTGGGGATTCTGGAAGTAGAGGAATCACTGGCAACCAGGAAAGCCAGGAGTCAAGGGAGAAGGCCCATTGGGACCGGATGGACCAGTTGGAAGATCTGGAAAGCCAGCAAGTATCCCTATAGGCCACATTGACTATGACACCCAATTACAGCTGCATGATCCTATCACGGAGATGCAATAAACCATGTTGTGATGATGATCCTATTGATGGGACGTTGTTTATTCTATCTTTTGTTTGGGTTGTTATCAcagggacttgctggtttggaTGGATTGTTGGGGGTTGAAGGAAACGAAGGAGATAATGGTGATATTGGTTACAGAGGCACCCCTGGGAGGCCTGGTATGCCAGGGAAGATGGGTCAAATTGGACGAACTGGATTGAGTGGTGGTCATGGAGCACCAGGGTCAAAGGGTAATCATGGATCTAAAGGAAAACAAGCACCTGCAGGGACAATGGGGCAAAGGGGTATTCCAGGGcttggaggagagaaggggacatTTGGCCAGCATGGCTCAAAGGGTCAGAGGCCTTCAGGGACATATTGGACCACGTGGAGTTAAAGGGAATCCAGGACTGCAAGGGAATGAAGGGCGGCTAGGTTCAAAAGGCATACAGGGAGACATTGGTCCGCGCAGTCCACCTGGGAAAAAGGGCTTCCCTGGTCAACCTGATCTGTTTGGAAAGAGAGGATACAAGGTATGCCTGGAGCTAAGGGAGTGAGAGCAAAACCGGACCATGACCAGGAGAACGCTTGACTCATTCCCTGACCATCACTCAAGCAGCTCCTTCAGCTGGCCTCAGGGCACCAAAGACAGCCCTGCAACCACCTGCAACAAGCTGGGGCTGATTCATCCACACCTGCAGGATGGAAACGTTTACGTGACCCTAACCAGGGCTGCCTGTTTGATGCCCTGCAAGTGTACCTGTAACTTCACTGTAGGAGGGATGACCTGTATACCTCCTGTGTTGTCACAAGTGGAGGTACGAGTATGGGGGAGCACAGAGATCCATAGAGGGGACTTGGAGCTGTTGCCCCTCAGGGACGTTAGTGCAGAGGGAAGGGGAGATCACTGAGACACAGACCTCAGAGCTGTCCTGGGACCTTTGTGCTTTTTGTAGCCTCCATTTATCCAGAGAGAAGAAGCAAGCACTGCCCAGTGTATGGGGCAAGATCATTTGGCTGCAATTCCTCATCTGGACAAAAGAATGTTGTCTCATCATGTTGTCTGTTCGCTGTAGCGCTTATGTATAATTGCGATAATAActagctgtactgtatgatgaaatatgtattttggagagattgataTAATGTGTATTTTATAAAGAAAAATATATAGCTGTTGTGTTGTTTGTATCTCCTGCATAtcgattattttttatttattcatttctcagtgatgtactgtgtgTGCTAATATATGCTTCATATTTGATTAATGTGGAGGTTTTAAGAATGTAATGTActcatttgtattttattgtttAAGCGTTTGTAAATATGTCTTTGCTAATA

Function

NR:

description
collagen alpha-1(I) chain-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036969361.1 False 997 mRNA 0.42 4 23170333 23173036
XR_005040975.1 False 2137 mRNA 0.46 18 23170333 23177766
XR_005040976.1 False 2486 mRNA 0.45 17 23170333 23177766
XR_005040977.1 True 2287 mRNA 0.46 18 23170333 23177766

Neighbor

gene id symbol gene type direction distance location
LOC110521572 LOC106584319 coding downstream 11160 23123873 ~ 23159173 (-)
LOC110521570 LOC106584321 coding downstream 47546 23087713 ~ 23122787 (-)
LOC118945912 NA coding downstream 86478 23083775 ~ 23083855 (-)
LOC118945924 NA coding downstream 87101 23083149 ~ 23083232 (-)
LOC118945931 NA coding downstream 87786 23082485 ~ 23082547 (-)
LOC110522764 LOC106584318 coding upstream 31076 23208842 ~ 23305375 (-)
LOC110521577 LOC106584314 coding upstream 297826 23475592 ~ 23508733 (-)
LOC110521580 LOC106584312 coding upstream 434953 23612719 ~ 23622387 (-)
LOC110521581 LOC106584311 coding upstream 444941 23622707 ~ 23639222 (-)
LOC110521583 NA coding upstream 464822 23642588 ~ 23644203 (-)
G2213640 NA non-coding downstream 5765 23164276 ~ 23164568 (-)
G2213636 NA non-coding downstream 10599 23159431 ~ 23159734 (-)
LOC110521569 NA non-coding downstream 85593 23082101 ~ 23084793 (-)
G2213607 NA non-coding downstream 94562 23075467 ~ 23075771 (-)
G2213606 NA non-coding downstream 95029 23075098 ~ 23075304 (-)
G2213660 NA non-coding upstream 11849 23189615 ~ 23190071 (-)
G2213647 NA non-coding upstream 19881 23197647 ~ 23199406 (-)
G2213649 NA non-coding upstream 21917 23199683 ~ 23200149 (-)
G2213650 NA non-coding upstream 22659 23200425 ~ 23200850 (-)
G2213648 NA non-coding upstream 23402 23201168 ~ 23203085 (-)
LOC110521564 LOC106584326 other downstream 169085 22982517 ~ 23008109 (-)
G2212908 LOC106613883 other downstream 1259597 21907963 ~ 21910736 (-)
G2212755 NA other downstream 1503718 21665964 ~ 21666615 (-)
G2211274 ttc14 other downstream 1863791 21304841 ~ 21306542 (-)
G2210769 NA other downstream 2647222 20518340 ~ 20523111 (-)
G2213654 NA other upstream 740 23178506 ~ 23179611 (-)
G2217605 NA other upstream 2739588 25917354 ~ 25920245 (-)
G2217805 prrc2c other upstream 3058919 26236685 ~ 26237398 (-)
G2217824 NA other upstream 3090580 26268346 ~ 26341495 (-)

Expression


Co-expression Network