RNA id: XR_005040976.1


Basic Information

Item Value
RNA id XR_005040976.1
length 2486
RNA type mRNA
GC content 0.45
exon number 17
gene id LOC118945817
representative False

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 23170333 ~ 23177766 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

catgatgaatataaaacatcttacctatgttatcaactaattctgattattccccaacacctTGTATCCAGATTGACTCTTGTATATTCATTATCTGTCTTTGCAGGGTGACAGAGGTCCTACCGGTGGACAAAGCGTTGATAGACCTAGAGGCGATAAAGTACTGAAAATTGTTTGCGCTTACTTTTGACATTCATTTGTGGAGTCATTTTGCATATCGTACTTGTTTAGAATTGTTGTGTGAGACGTACTGATGTTTTTGGGGGGAAGGGGGGTTTCACAGGGTGGAGATGGTCGAGGGGGATTTTCTGGTTTGCCAGGCCCTTTTGTAAATGGAAATAGTCTGTTTAATTTGATGGATAATTCTTATCTGACTGTGGCTCAATGTGTCTGCCTTGTCTACAGGGAGAGATTGGAAAATCAGGAAAGAGAGGAGCTGAAGGAGACCTGGTATTAAGGTTCCTGTGTAACTACTCTTCTTATTCTGTCTATACAGCTTCCTGTCATTGTCtcagtataatttttttttaaatcaccatCAATCCTATTTTTGGTGAAGAATTGACCTGATATTACAATTGAGATATCCAGACCTCCAGTTGTTTTCCAGTCAGTATGTTTGAGGTATTGTATTTTCATCTGACCCTTGGATTTGAATCACACAGGGGATGCCAGGAATTCCAGGACTCACTGGACTGAAAGGGCTGAAGGTGAAACTTTTACTTCAGGGTGCTGTCTTGCCACACTTGCACATGCTGATATTACCACTAGAGGGCCAGAATTCAAGTGAAAACTCGAGaaaaatggaatggaatggaacatGTCTTTCTTCACTTGGGGACTTCAATGCCATCTTGGGGGGACCCATTGGAGGAACTGCATCTGATGGGAATTCCGGATCTACCAGACTACGGGGAATGGTGGGGAAAAGTGGAGCAACAGGGATTCAAGGTCCAGTTGGGAAGAGTGGGGATTCTGGAAGTAGAGGAATCACTGGCAACCAGGAAAGCCAGGAGTCAAGGGAGAAGGCCCATTGGGACCGGATGGACCAGTTGGAAGATCTGGAAAGCCAGCAAGTATCCCTATAGGCCACATTGACTATGACACCCAATTACAGCTGCATGATCCTATCACGGAGATGCAATAAACCATGTTGTGATGATGATCCTATTGATGGGACGTTGTTTATTCTATCTTTTGTTTGGGTTGTTATCAcagggacttgctggtttggaTGGATTGTTGGGGGTTGAAGGAAACGAAGGAGATAATGGTGATATTGGTTACAGAGGCACCCCTGGGAGGCCTGGTATGCCAGGGAAGATGGGTCAAATTGGACGAACTGGATTGAGTGGTGGTCATGGAGCACCAGGGTCAAAGGGTAATCATGGATCTAAAGGAAAACAAGCACCTGCAGGGACAATGGGGCAAAGGGGTATTCCAGGGcttggaggagagaaggggacatTTGGCCAGCATGGCTCAAAGGGTCAGAGGCCTTCAGGGACATATTGGACCACGTGGAGTTAAAGGGAATCCAGGACTGCAAGGGAATGAAGGGCGGCTAGGTTCAAAAGGCATACAGGGAGACATTGGTCCGCGCAGTCCACCTGGGAAAAAGGGCTTCCCTGGTCAACCTGATCTGTTTGGAAAGAGAGGATACAAGGTATGCCTGGAGCTAAGGGAGTGAGAGCAAAACCGGACCATGACCAGGAGAACGCTTGACTCATTCCCTGACCATCACTCAAGCAGCTCCTTCAGCTGGCCTCAGGGCACCAAAGACAGCCCTGCAACCACCTGCAACAAGCTGGGGCTGATTCATCCACACCTGCAGGATGGAAACGTTTACGTGACCCTAACCAGGGCTGCCTGTTTGATGCCCTGCAAGTGTACCTGTAACTTCACTGTAGGAGGGATGACCTGTATACCTCCTGTGTTGTCACAAGTGGAGGTACGAGTATGGGGGAGCACAGAGATCCATAGAGGGGACTTGGAGCTGTTGCCCCTCAGGGACGTTAGTGCAGAGGGAAGGGGAGATCACTGAGACACAGACCTCAGAGCTGTCCTGGGACCTTTGTGCTTTTTGTAGCCTCCATTTATCCAGAGAGAAGAAGCAAGCACTGCCCAGTGTATGGGGCAAGATCATTTGGCTGCAATTCCTCATCTGGACAAAAGAATGTTGTCTCATCATGTTGTCTGTTCGCTGTAGCGCTTATGTATAATTGCGATAATAActagctgtactgtatgatgaaatatgtattttggagagattgataTAATGTGTATTTTATAAAGAAAAATATATAGCTGTTGTGTTGTTTGTATCTCCTGCATAtcgattattttttatttattcatttctcagtgatgtactgtgtgTGCTAATATATGCTTCATATTTGATTAATGTGGAGGTTTTAAGAATGTAATGTActcatttgtattttattgtttAAGCGTTTGTAAATATGTCTTTGCTAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2532250 lncRNA downstream 5765 23164276 ~ 23164568 (-) True G2213640
TU2532246 lncRNA downstream 10599 23159431 ~ 23159734 (-) True G2213636
TU2532211 lncRNA downstream 85593 23082101 ~ 23084740 (-) False LOC110521569
TU2532281 lncRNA upstream 11849 23189615 ~ 23190071 (-) True G2213660
TU2532261 lncRNA upstream 19881 23197647 ~ 23198330 (-) False G2213647
TU2532262 lncRNA upstream 19881 23197647 ~ 23198818 (-) True G2213647
TU2532267 lncRNA upstream 21917 23199683 ~ 23200149 (-) True G2213649
TU2532269 lncRNA upstream 22659 23200425 ~ 23200850 (-) False G2213650
XM_021599205.2 mRNA downstream 11160 23123873 ~ 23159173 (-) False LOC110521572
XM_036968576.1 mRNA downstream 11169 23128944 ~ 23159164 (-) True LOC110521572
XM_021599207.2 mRNA downstream 33305 23123873 ~ 23137028 (-) False LOC110521572
XM_021599206.2 mRNA downstream 34710 23123873 ~ 23135623 (-) False LOC110521572
XM_021599200.2 mRNA downstream 47546 23087713 ~ 23122787 (-) False LOC110521570
XM_036968771.1 mRNA upstream 31076 23208842 ~ 23305375 (-) False LOC110522764
XM_021599216.2 mRNA upstream 297826 23475592 ~ 23508733 (-) True LOC110521577
XM_021599219.2 mRNA upstream 434953 23612719 ~ 23622286 (-) False LOC110521580
XM_021599220.2 mRNA upstream 434953 23612719 ~ 23622286 (-) False LOC110521580
XM_021599221.2 mRNA upstream 434953 23612719 ~ 23622387 (-) True LOC110521580
TU2532098 other downstream 169085 22986359 ~ 23001248 (-) True LOC110521564
TU2531474 other downstream 1259597 21907963 ~ 21910736 (-) True G2212908
TU2531311 other downstream 1503718 21665964 ~ 21666615 (-) True G2212755
TU2529695 other downstream 1863791 21304841 ~ 21306542 (-) True G2211274
TU2529121 other downstream 2650791 20518340 ~ 20519542 (-) False G2210769
TU2532275 other upstream 740 23178506 ~ 23179611 (-) True G2213654
TU2532260 other upstream 19881 23197647 ~ 23199406 (-) False G2213647
TU2536522 other upstream 2739588 25917354 ~ 25920245 (-) False G2217605
TU2536525 other upstream 2739588 25917354 ~ 25919877 (-) True G2217605
TU2536746 other upstream 3058919 26236685 ~ 26237398 (-) True G2217805

Expression Profile