RNA id: TU2531474


Basic Information

Item Value
RNA id TU2531474
length 520
RNA type TUCP
GC content 0.47
exon number 3
gene id G2212908
representative True

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 21907963 ~ 21910736 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGTGAGAGTGATGCCTCTCCAAACATCCTGGATTTCTTCCTCTGTTAATACTCTGGGCTGTACCACTTCGCTCACAGGCTCAGTCTCCATATCTTGTTTTGAGCGAACCACATTCTACAGTATCTTTGTCCAGTTTCTTGGAACTCCTACATTTGAAGCCTTCCTTTTCCCTCATTGAGAAACTCTTCTTTACGGATGCAGGCCCTGACACAAGTGGGCAATGGGGAATTCCCTTCAAAAGAGAAGGGAACATTTACATGTAGAGATGGCAGTTGTCCTCGAAATCTTCGCAACCCCATCTGCCCTTTACATCCTCGATTACATGATTCTTGAGGAACGTCTTCAGCAGCTGGACAGTCTGTTGTCTGGTGACATCTGGTCCGAAGTTACTATTGTTCCTGAGCAGTTCATGCAACCAGTCGACAGCTGCCACAGCAGTAAAACAGTTCGCATACACTCTGAAGTGCTGCCGATGTTTTCGCAGAGGCATTCCCGCTCGGAAAAGCTTTGCAACTTCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2531472 lncRNA downstream 3893 21903848 ~ 21904070 (-) True G2212906
TU2531468 lncRNA downstream 8430 21899269 ~ 21899533 (-) True G2212902
TU2531454 lncRNA downstream 25828 21881929 ~ 21882135 (-) True G2212889
TU2531453 lncRNA downstream 27182 21880563 ~ 21880781 (-) True G2212888
TU2531447 lncRNA downstream 41154 21866528 ~ 21866809 (-) True G2212882
TU2531460 lncRNA upstream 6338 21917074 ~ 21918222 (-) True G2212895
TU2531532 lncRNA upstream 100053 22010789 ~ 22013902 (-) False LOC110521551
TU2531533 lncRNA upstream 100053 22010789 ~ 22013902 (-) True LOC110521551
TU2531545 lncRNA upstream 119267 22030003 ~ 22030255 (-) True G2212975
TU2531552 lncRNA upstream 136287 22047023 ~ 22047328 (-) True G2212982
XM_021599152.2 mRNA downstream 107146 21667199 ~ 21800817 (-) False LOC110521548
XM_021599153.2 mRNA downstream 107146 21667199 ~ 21800817 (-) False LOC110521548
XM_021599155.2 mRNA downstream 107146 21667199 ~ 21800817 (-) False LOC110521548
XM_036968959.1 mRNA downstream 107146 21667199 ~ 21800817 (-) False LOC110521548
XM_021599156.2 mRNA downstream 107146 21667694 ~ 21800817 (-) False LOC110521548
XM_036969088.1 mRNA upstream 99607 22010343 ~ 22036740 (-) False LOC110521551
XM_036969087.1 mRNA upstream 99607 22010343 ~ 22066361 (-) False LOC110521551
XM_021599165.2 mRNA upstream 99607 22010343 ~ 22107387 (-) False LOC110521551
XM_036969086.1 mRNA upstream 99607 22010343 ~ 22107387 (-) False LOC110521551
XR_002473164.2 mRNA upstream 99607 22010343 ~ 22107387 (-) False LOC110521551
TU2531311 other downstream 241348 21665964 ~ 21666615 (-) True G2212755
TU2529695 other downstream 601421 21304841 ~ 21306542 (-) True G2211274
TU2529119 other downstream 1384852 20518340 ~ 20523111 (-) False G2210769
TU2529121 other downstream 1388421 20518340 ~ 20519542 (-) False G2210769
TU2528844 other downstream 1772748 20134136 ~ 20135215 (-) True LOC110521508
TU2532098 other upstream 1075623 22986359 ~ 23001248 (-) True LOC110521564
TU2532275 other upstream 1267770 23178506 ~ 23179611 (-) True G2213654
TU2532260 other upstream 1286911 23197647 ~ 23199406 (-) False G2213647
TU2536522 other upstream 4006618 25917354 ~ 25920245 (-) False G2217605
TU2536525 other upstream 4006618 25917354 ~ 25919877 (-) True G2217605

Expression Profile