RNA id: TU2531311


Basic Information

Item Value
RNA id TU2531311
length 652
RNA type TUCP
GC content 0.32
exon number 1
gene id G2212755
representative True

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 21665964 ~ 21666615 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGAGAATGCACTATTGGAAAAGTATTCATGTGAgaattatgtatatatattttttaacaatgCTGCTGACCAGAATAGGCATTTCACTCTGTTCCATTTCTGGATGGATGTTCATTTTAAGTTCTGACATTACAGCATGCTTTCATGGTTATAATGGTCTTTGGATATGTTTTTTGGATACATTCTCTGTGTTTTCAAATTTTGGGATCTCTCTCATAAAGAAGTTTCTCTCATTGCAAACCGGTGAGGTTTACAAAGAGACGTTATTATATTGTGACATTTGGTGCCCTTTTATTACAATCAAAATCATATACCTTATGAGCCCTAACAATGTTTCATTACTATTTTTGTCAAATGTAGCATCAATTGTGACATTCTTGAGCAAAACCAAGCACCTATAATCCTATGGAGGGACCCTGGTTGAATTTGTGCCAAGCTAAGCTGGTACGTTGTACTTCAATATCCAGTAAATTACGAGTTAAAATATTCAAGATATTGTGAGAAAGTTTGATAATATAATTATTTTTACTAAATGTTTTCAGgttattattcagaatatatTGATATACCTTAGCTTTGCTCAAATTGCGAGATTTTATAAGGACAATGAAAAAGTATAGGTGAAGTACTTATGACTTGGAGAATAAAAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2531312 lncRNA downstream 90 21664747 ~ 21665874 (-) True G2212756
TU2531303 lncRNA downstream 13758 21651970 ~ 21652206 (-) True G2212747
TU2531297 lncRNA downstream 18131 21647603 ~ 21647833 (-) True G2212741
TU2529947 lncRNA downstream 181303 21484451 ~ 21484661 (-) True G2211490
TU2529933 lncRNA downstream 184883 21478753 ~ 21481081 (-) True G2211477
TU2531310 lncRNA upstream 178 21666793 ~ 21667452 (-) True LOC110521548
TU2531314 lncRNA upstream 2312 21668927 ~ 21669339 (-) True G2212758
TU2531351 lncRNA upstream 60950 21727565 ~ 21745926 (-) True G2212790
TU2531447 lncRNA upstream 199913 21866528 ~ 21866809 (-) True G2212882
TU2531453 lncRNA upstream 213948 21880563 ~ 21880781 (-) True G2212888
XR_002473159.2 mRNA downstream 305085 21352715 ~ 21360879 (-) False LOC110521545
XM_021599135.2 mRNA downstream 946232 20717114 ~ 20719732 (-) True LOC110521532
XR_002473156.2 mRNA downstream 951353 20705949 ~ 20714611 (-) True LOC110521534
XM_021599129.2 mRNA downstream 1010632 20648384 ~ 20655332 (-) True plekhb2
XM_036968927.1 mRNA downstream 1010976 20648384 ~ 20654988 (-) False plekhb2
XM_021599152.2 mRNA upstream 584 21667199 ~ 21800817 (-) False LOC110521548
XM_021599153.2 mRNA upstream 584 21667199 ~ 21800817 (-) False LOC110521548
XM_021599155.2 mRNA upstream 584 21667199 ~ 21800817 (-) False LOC110521548
XM_036968959.1 mRNA upstream 584 21667199 ~ 21800817 (-) False LOC110521548
XM_021599156.2 mRNA upstream 1079 21667694 ~ 21800817 (-) False LOC110521548
TU2529695 other downstream 359422 21304841 ~ 21306542 (-) True G2211274
TU2529119 other downstream 1142853 20518340 ~ 20523111 (-) False G2210769
TU2529121 other downstream 1146422 20518340 ~ 20519542 (-) False G2210769
TU2528844 other downstream 1530749 20134136 ~ 20135215 (-) True LOC110521508
TU2528783 other downstream 1582380 20073489 ~ 20083584 (-) True LOC110521505
TU2531474 other upstream 241348 21907963 ~ 21910736 (-) True G2212908
TU2532098 other upstream 1319744 22986359 ~ 23001248 (-) True LOC110521564
TU2532275 other upstream 1511891 23178506 ~ 23179611 (-) True G2213654
TU2532260 other upstream 1531032 23197647 ~ 23199406 (-) False G2213647
TU2536522 other upstream 4250739 25917354 ~ 25920245 (-) False G2217605

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
eurasian perch (Perca fluviatilis) TU127732 False 2245 lncRNA 0.37 1 NC_053120.1 11092187 ~ 11094431 (-)