RNA id: XM_021599200.2


Basic Information

Item Value
RNA id XM_021599200.2
length 4177
RNA type mRNA
GC content 0.45
exon number 24
gene id LOC110521570
representative False

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 23087713 ~ 23122787 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCATGCTGACTCCTCCCCTAGAATCTTGGCCAATTGTAAAGATGGCGTCCATCATGGAGGGACCGCTGAGCAAATGGACTAACGTCATGAAAGGTTGGCAGTATCGCTGGTTTGTTTTGGACTACAATGCGGGTTTACTGTCATACTACACGTCCAAGGACAAGATGATGCGTGGCTCTAGAAGAGGATGTGTGCGTCTCCGGGGAGCTGTAATAGGAATCGATGACGAGGACGACAGCACATTCACCATCACTGTGGACCAGAAGACTTTCCATTTTCAAGCTCGAGATGCAGACGAACGGGAGAAGTGGATCCATGCCTTAGAGGGGACTATTCTCCGCCACACCCTTCAACTGCGGGAGGCAGAGACAGGATTTGTTCCAAGTGTCCAAGACTTCGATAAGAAACTTGCAGAGGCTGACGCATACCTACAAATTCTAATTGATCAGTTAAAGCTCTTCGATGAGAAAATCAAAGATGGCAATGAAGAGTCATGCAGAAAAATTGAACATTTGAAGGAAACTACATGTAGTATGGTAGAGTCCATCAAGCACTGTATTGTATTGCTGCAGATTGCCAAGGATCAAAGTAACGAACAGCAACACTCAAACGGACTGATAAGCACCATCAACCCAGTGGATGGGATATTTCCGCCTCTGGACGCTTCTTTAGTCAATTTAGCCATGCCAACACAGACCACCCTCCCCACAGATGGCTCTCAGATGTGTAAAGGAGAACAGCGGCCTTCCACTTTACCGGTGGGGGCTGTTGTCACGGTGATGGGCAGTCTGCAGACTCCGACCCCCAACAGCACAGGGAGTGGCCCCTCGGACCCCAGCAGCAGCGGTGCCTCTCCCAGTCACATGACCATCCCCTCCCACTCGGTCCCTGACTTCTCCTACTCCAGCAGCGAAGATGAGTTCTACGACGCTGACGAGTTCTACCAGAACAGCACATCTCCCAAGCACCTtctagaTCCTTCTCGGCCTCCTGCTGCCTTGCCTCACAGCAATGACGGAACAGTGCTGAAACGACCAGACACTAACGAGTCCCTCAACTCCTCCATGTCTAACGGCACCACTGATGCAGATCAATTTGACAGCCATGATGACGAGGCGGAGGATCAGGGGGAGTCTGTGGAGGAGCACAAGAGTGTCATCATGCACCTGCTGTCCCAGGTGCGGCTGGGCATGGACCTCACCAAGGTGGTCCTGCCCACATTTATCTTGGAGAGGAGGTCTTTGCTGGAGATGTACGCTGACTTCTTTGCACATCCGGATTTGTTTGTCAGTATCGCAGATCAGCTGGAGCCCAAAGAGCGCATGGTGCAGGTGGTGAAGTGGTACATGTCAGCCTTCCATGCGGGAAGGAAAAGCTCAGTGGCCAAGAAGCCATACAACCCCATCCTGGGAGAGGTCTTCTTCTGCCACTGGGACCTGCCTTCAGAGAGCGAGGAGCCCGCCGCAATGGAGCCATCGTCAGAGGGTCCGGTGCCATGGGCTTCAGCCAACAGTGTGTCTTTTGTAGCAGAGCAGGTCTCTCATCACCCCCCCaTTTCTGCATTCTACGCAGAGTGTCTCAGAAAAAAGATTCAGTTCAACGCCCACATTTGGACCAAGTCAAAGTTCTTAGGAATGTCAATTGGAGTGCACAATATTGGCCAGGgATGTGTGTCCTGTCTGGAACATGACGAGCACTACATACTCACCTTTCCCAATGGATATGGCAGGTCGATCCTGACTGTCCCATGGGTGGAGTTGGGTGGAGAGTGTAACATCAACTGCTCCAAAACAGGCTACAGTGCCAGCATTGTGTTTCACACTAAGCCCTTCTACGGTGGCAAGAAGCACAGGATCACCGCTGAGATCTTTCCTCCCAATGACAAGAAATCATTCTGCTCCATTGAAGGAGAGTGGAATGGAGTGATGTACGCTAAGTGGGCATCTGGGGAAAACTCCTTGTTCATTGACACAAAGAAAATGGGCTGTATCAAGAAGAAGGTGAGGAAGTTGGAGGACCAGCTGGAGTACGAGTCCCGCAGCCTTTGGAAGGATGTGACAGTCAGTCTGAAGTCGAGAGACATCGATGCAGCAACGGAAGCCAAGCACAGGCTGGAGGAGAAGCAAAGGGGCGAGgccagggagaggaaggagaatgaAATGCAGTGGGAAACTAGGTTGTTCCATGAGGATGGTGAGTGCTGGGTCTACGATGAGCCTCTACTGAAAAGAACTGGATCACAGAGGCACTGAGGCCAAAGATGCAGATCTTGGAGTCTTAATAAGAACTCTTTTGCAAAGCACTTCTTATCCAAGCCTTGGAATGACTGATGATTGAACATGATCACAGCTTTGCAAGTTAAAATTTAATGAAATTAAGAAGAAAcatctacaatgtaaaaaataataaccgTTGTTTTGCCAACCCCACATCCTCCACCCCCTGAAAGACAAAAAAAAGCATGACAAAAACAGTACCAATGCCCTTCGGCTACACAAACAAGTCCTCACAATCTTGCAGGAGGATCCCTCAAGGGTCTGTTATTTTCCTCGAGGGGGCGGGTGTTTTGATCGAACAAACCTCGAAAAACAGCGTTCTGTATCTCAGGGAAGCTGGTGACTGAGGAATGAATGGTGTTCTTCCAGGAGTTAGACAGCCTTATGGTGGAATCACAAGGGGGATAACTTGGCTTGCCAACAACTAGCTACAGCTGTTTATATATAGATACTTATGATGAATGTATATATATTCtctttttttaaaattgtatttctctttctttctggcAGTAGTAAATATTTTAGGATATGAACTCTATGGCAATACATCAGGAATCATTCCTTTTCCTTTCTACATTCGTGCCCTCTCAAGTTCGTTGACATTCTCTCCCCATGTACTAACTCCATCTAGTGCagtggtgtcaaactcattttgcccCGGGGGTCGCATTATGTCTTCAACGAGGTCCAGAGGGCCGCattgaaaatgtgttatttcctCACCgtcatttttttaattttaatttctgatgctccctgactgtctggCTTTAATTTTGGTGATTTATTagcgagctggacacagtcaagaaactgtgaatgtaggtccattatcatttcaACACGGTTTAGATTttattttagtcattttaaagtctATTGAGGTTTTTTTTTGTTTCAATGCTAACACCTACGGGCCGGATTGGACTCCCACGCGGGCCagatgtttgacacccctggatTAGTGTATGTTTGTCTGCTCAAGATGACCAGAAGAGGCACCCAAGAAGTCTGCATTTGCAAGATAGACAAAGGTGGAGTCGAGGAAGAGGACTTGTCAACATGTTTATTATTTTCCCTTGTGGCATTTATGAACAAATGTATGTCTTTTGATTTGTTTTTCAGGTGATTGGGTAACATGCTAAGGCGCTTTAATGAGCAGTTTTATTGAGTGCTAAATTTGGTTGAGGGTACAAACTTTAATACCAGGTTAGATTATGTCCAGTGGTGGTGTTACATATGAGAGAATAATTGTCTTGTTTCTGCCTTTAATCGAAAGGTTCATTCCCCATTCAGTGCCACATCATTTTAAACTAAATAAGCAGATGTTTGGATAAGTACCTAAAAGAAAATCTCGATCTTTCACTTGAGCATATGAATCATATGACTGTGGATATTCTTCAGCGAACCCATTATGTGAAATATTGTGAGCTAAAGACTATTCCTTTTCCCCTCAGAAGGCTTTTTATCAGTAAGCAAGGCCAGGTAATACAGTACATGAATTGACATTTTGGTTATTGGAAAGGAATTGTGACCAAAACCATTTGTAGCGATAGAACACATTCCTGCTGAATACACGCACGCAATGATTGCCTGTGGTGAAAAACTCAACAAGTTCACTTAACTGAAATGTAAAGGTGGAGTATCATCCTTATCTCTAAAGtagataaatacagtatcttctaATATAATAGAATTTAGAGGTTACAAACTCAAGCCATTTTTCTTTTCATGTCTTTGTAAATTAATATTGAATCAAGGCCTTGCATACATTTCAGAATCGCTTCAAAAGAGCAATTggaacaaaatgtattttttatttccttTGAATCATAACCATTGATTGTATTAGATTTTCATGTTTATTGATGCATAATATTAAATCTCCATGAGTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2532210 lncRNA downstream 2973 23082101 ~ 23084740 (-) False LOC110521569
TU2532211 lncRNA downstream 2973 23082101 ~ 23084740 (-) False LOC110521569
TU2532212 lncRNA downstream 2973 23082101 ~ 23084740 (-) False LOC110521569
TU2532213 lncRNA downstream 3338 23082101 ~ 23084375 (-) True LOC110521569
TU2532208 lncRNA downstream 11942 23075467 ~ 23075771 (-) True G2213607
TU2532246 lncRNA upstream 36644 23159431 ~ 23159734 (-) True G2213636
TU2532250 lncRNA upstream 41489 23164276 ~ 23164568 (-) True G2213640
TU2532281 lncRNA upstream 66828 23189615 ~ 23190071 (-) True G2213660
TU2532261 lncRNA upstream 74860 23197647 ~ 23198330 (-) False G2213647
TU2532262 lncRNA upstream 74860 23197647 ~ 23198818 (-) True G2213647
XR_002473171.2 mRNA downstream 2920 23082101 ~ 23084793 (-) False LOC110521569
XR_005040936.1 mRNA downstream 2949 23082101 ~ 23084764 (-) False LOC110521569
XR_005041065.1 mRNA downstream 3858 23083775 ~ 23083855 (-) True LOC118945912
XR_005041077.1 mRNA downstream 4481 23083149 ~ 23083232 (-) True LOC118945924
XR_005041084.1 mRNA downstream 5166 23082485 ~ 23082547 (-) True LOC118945931
XM_021599206.2 mRNA upstream 1086 23123873 ~ 23135623 (-) False LOC110521572
XM_021599207.2 mRNA upstream 1086 23123873 ~ 23137028 (-) False LOC110521572
XM_021599205.2 mRNA upstream 1086 23123873 ~ 23159173 (-) False LOC110521572
XM_036968576.1 mRNA upstream 6157 23128944 ~ 23159164 (-) True LOC110521572
XM_036969361.1 mRNA upstream 47546 23170333 ~ 23173036 (-) False LOC118945817
TU2532098 other downstream 86465 22986359 ~ 23001248 (-) True LOC110521564
TU2531474 other downstream 1176977 21907963 ~ 21910736 (-) True G2212908
TU2531311 other downstream 1421098 21665964 ~ 21666615 (-) True G2212755
TU2529695 other downstream 1781171 21304841 ~ 21306542 (-) True G2211274
TU2529121 other downstream 2568171 20518340 ~ 20519542 (-) False G2210769
TU2532275 other upstream 55719 23178506 ~ 23179611 (-) True G2213654
TU2532260 other upstream 74860 23197647 ~ 23199406 (-) False G2213647
TU2536522 other upstream 2794567 25917354 ~ 25920245 (-) False G2217605
TU2536525 other upstream 2794567 25917354 ~ 25919877 (-) True G2217605
TU2536746 other upstream 3113898 26236685 ~ 26237398 (-) True G2217805

Expression Profile