XLOC_000041 (si:ch211-132g1.1)


Basic Information

Item Value
gene id XLOC_000041
gene name si:ch211-132g1.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 1915967 ~ 1923253 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000079
AAACTTTCTGGAACAATTGTTGCGTTCAGAAGAGCAATGAGCTGCCAAAACAATCTCTTGTTTTTATTCCTCTGTGGCTTCGCTGCGCTCACTGACTCAGCACAGACACGTACAGAACATTTACTAGAAGGAAAACCCTACAGCATTAATGGGAAaacaacaaacaatgaaaaaccTGCTGATATCAGATGGGCCTTTACCTACAGTGATGGAAACACAACTGAATGGAAAAAAGGATCCAAGAAAAAACCTCCAGCAGGATTAACAATAGAAGAAGACGGATCTTTACGATTTAAAAGTGTTCATCTGAGTAACACCGGCACATATAGATACAGTGCTTTTAATAAAGGTGGCACACAGATTGGTGATGAAACAGTGGAACTTAAAGTTTATGTGAAGGCTCCTAAACCTACTGTGGAGATCAACTGTACTGCATCTCAAGGAAATGTAATACTCCACTGTAAACACCTTGGAAACAATAAAGATCTGACGATATTCTGGTATGAAGACGGCACGAAGAAGCtagatgaaaaaaaatctgatctgaCCTTAAAATTGTCTGACGTGAAGAATAAAGAGTACGCATGCAATCTGACCAATCCTGTAAGCAGTGCACTAAGTGACAAAGTTTCAGCCTCATGTAGTTCCTTTCCTCCTACACTTTTTGGATTTGATTTTTGGATCATGATTGGG

Function

symbol description
si:ch211-132g1.1 Orthologous to human CD2 (CD2 molecule).

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-090313-24 Orthologous to human CD2 (CD2 molecule).

Ensembl:

ensembl_id ENSDARG00000040250

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000079 True 693 mRNA 0.39 4 1915967 1923253

Neighbor

gene id symbol gene type direction distance location
XLOC_000040 si:ch211-132g1.4 coding upstream 4586 1904419 ~ 1911381 (+)
XLOC_000039 si:ch211-132g1.6 coding upstream 16119 1896737 ~ 1899848 (+)
XLOC_000038 atp1a1a.5 coding upstream 65863 1838164 ~ 1850104 (+)
XLOC_000037 atp1a1a.3 coding upstream 100307 1805294 ~ 1815660 (+)
XLOC_000036 atp1a1a.1 coding upstream 119135 1712140 ~ 1796832 (+)
XLOC_000042 si:ch211-132g1.7 coding downstream 17778 1941031 ~ 2000357 (+)
XLOC_000043 NA coding downstream 78463 2001716 ~ 2005632 (+)
XLOC_000044 NA coding downstream 100156 2023409 ~ 2023645 (+)
XLOC_000045 slc5a3a coding downstream 101832 2025085 ~ 2027100 (+)
XLOC_000046 mbnl2 coding downstream 178288 2101541 ~ 2217861 (+)
XLOC_000034 NA non-coding upstream 296653 1617203 ~ 1619314 (+)
XLOC_000032 NA non-coding upstream 337716 1571847 ~ 1578251 (+)
XLOC_000031 NA non-coding upstream 555136 1358731 ~ 1360831 (+)
XLOC_000030 NA non-coding upstream 573730 1315289 ~ 1342237 (+)
XLOC_000029 CR450787.2 non-coding upstream 697162 1218691 ~ 1218805 (+)
XLOC_000049 CR352215.1 non-coding downstream 352352 2275605 ~ 2275742 (+)
XLOC_000051 CR352215.2 non-coding downstream 479850 2403103 ~ 2403224 (+)
XLOC_000053 NA non-coding downstream 1795413 3718666 ~ 3720603 (+)

Expression


Co-expression Network