G2238469 (rpl36)


Basic Information

Item Value
gene id G2238469
gene name rpl36
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 43303564 ~ 43317407 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2559010
AGACACAGACGTGCCCCAGAGACATCTGAAGAGCTCCACTCCAATGTCTGCAGGCATCTCACCCTAGTAAACTTGAAAAGACATGCAGCCTACAAGGCATATGCTCAAAGATAAATTGAGAAAATCAGTTCAAGTCCATTGCTAAGCATAGTTCGACTTAGTCATTCTGAAACAAGGAAGGAGCTGACAACTctccattttttaaatataaatatttatttgcAAGAACCGCTTAATCCTTCTTGGCAGCGGCTTTCCTCATGGCAGCCAGAACGTTGCTGagctcttccctctttctcttggCGCGGATGTGAGTTCCAATCCTCTTCTTGATGAACTTGAGGGCACGCTTGTCCTTGGAAACTTTCAGCAACTCCATGGCGCGTCTCTCGTAGGGGGCGAAGCCGCACACCTCACGGATCATGTCACGCACAAACTTGCTGTGCTTGGTCAGACGCCCTCGCCTACGTGCATGTTTCGGTGCAGTCACATTCTTGGTTACAGGGTGGCCTTTACTAAGGCCCACGGCCATAGGATACCTGATAGCCATGTTTGCTTTCTTTAATGGCGGACAAACCGGAAGGAACGCTTAGCGGTGGAGGCTGGGTCATGAGGGTTtttaataaaatgtaaaacatcAGGACAATCTTTCTAGCGCCACATAAGGGTGTGgaccattcagacagtagttTTTCAAGGGAAAACTTTATAGCTAGCTATATAATCCAAAAGTAAATCAtttagacctctcagcagtattaatcaaattaaatcatttccTAAAATGCTTTAAAAACAActagtgtagactaacagtgaaatgcgttACTtacggcccttcccaacaatgcagagagaaagaaaatagagaaataataaaaGTAAAACGCGtagtaataaatacacaatgagtgcaaaaagggtcaatgcataTAGTCCAGG
>TU2559011
AGACACAGACGTGCCCCAGAGACATCTGAAGAGCTCCACTCCAATGTCTGCAGGCATCTCACCCTAGTAAACTTGAAAAGACATGCAGCCTACAAGGCATATGCTCAAAGATAAATTGAGAAAATCAGTTCAAGTCCATTGCTAAGCATAGTTCGACTTAGTCATTCTGAAACAAGGAAGGAGCTGACAACTctccattttttaaatataaatatttatttgcAAGAACCGCTTAATCCTTCTTGGCAGCGGCTTTCCTCATGGCAGCCAGAACGTTGCTGagctcttccctctttctcttggCGCGGATGTGAGTTCCAATCCTCTTCTTGATGAACTTGAGGGCACGCTTGTCCTTGGAAACTTTCAGCAACTCCATGGCGCGTCTCTCGTAGGGGGCGAAGCCGCACACCTCACGGATCATGTCACGCACAAACTTGCTGTGCTTGGTCAGACGCTGAAACACAAAATCAGCGAAGAGTTAGATGCATGCATTAGAACTAACAGTAACTGTGGCCTATGTTTCAGCCATATTGTGGACCACTAGGCCCATTATCTCATAATAACAGGTTCAAACATTTGATGTGGTCATCTACTTTGTTTCAAAACATATGTATATGCATGTCGCTAATGTAGAGACAGACGAAGTGAATCCTGAACCCCGGCCCTCAATCACTACACTGGTGGCAGCAATGGGATTAGAAGACAAACTTGAACCAGCACCCAGCAGTTCTAGGACAAGCAAACAACCTGTGGCAAAGGGTCCAGACCCTTTACCAGAGGACATAGTGACCTGAGACTCTACCAATACAACACTGTGGTTGTCATGTTTCTATCCATTCAGATGAACTCACCCCTCGCCTACGTGCATGTTTCGGTGCAGTCACATTCTTGGTTACAGGGTGGCCTTTACTAAGGCCCACGGCCATAGGATACCTGATAGCCATGTCTGTGGAAAGAAAGAACAGTGAGTCAGTGGTGCCTGCACCACATGCAATTGCTTTGGAGTTGTTCAAATAATATTAAATGTCTATGATCAATAAATAATCGAAATCTTAACATTTCACGAGGCCTGATTATTTAATTACCTACATCATGTTATCCCTTTGGTACGCAACATCACGTCGATAAAAAAGATGCCTAAGTTGGGAAAATGTAAGGCATCTAGGGCTTATGTTAACTTTGATTGTTGATGAAAACACTATGCAACATTATCGGCAAGAGACGTCTATTGTGCCAAAGAGATTTAGTTGTTAAACGGGAGTGACGAGTATGTTGATATAACTGTAATTGTTAAAATTCCGCTTTAACCATCAGAATTCGATAAGGTTATTCAAGCCAACATATTACGCATTAATTAAGAGTAGGCAAAGTGATTGTCAGACAAATTATATCAAAATTGTCACCATTGCAACATTTGATGTACAGCCACATTCACAGTGGTTGTCTGAAGCATGCTATTGGAATTCACAGCTTGATGATGCCTCATCGTGATTGACGTTGCAAATGATTGGAATAACCAATGAGCGTCAATCTTTCCTTTGCAGTACCTCAAACTGACGTGATTACCAGCTGAGAAACTTACAAGTTCATTTTACTCCTGGTTCAAAGTTTGTCTaggcagtgtcttaacatcatccaACAACCTACGGAGTTTTTTTGTTGTGGTCTTAAAACAGGTTTACAAGATTCCTAGGACCTTTTCtaagatgctttgtggatacaatCCCTTGTCTGGCGCTACCAGAATAATGCTTTTCTACAATGCCATCACAATATT

Function

symbol description
rpl36 Predicted to be a structural constituent of ribosome. Acts upstream of or within brain development and regulation of cell cycle. Predicted to be located in cytoplasm and ribosome. Predicted to be part of cytosolic large ribosomal subunit. Is expressed in endodermal cell; intestine; liver; and pancreas. Orthologous to human RPL36 (ribosomal protein L36).

NR:

description
PREDICTED: 60S ribosomal protein L36-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2559010 False 942 lncRNA 0.44 4 43303564 43317407
TU2559011 True 1780 lncRNA 0.42 2 43315132 43317407

Neighbor

gene id symbol gene type direction distance location
LOC110520958 NA coding downstream 6047 43296121 ~ 43297517 (-)
LOC110521854 LOC106583953 coding downstream 28528 43193642 ~ 43275036 (-)
LOC110521851 LOC106583956 coding downstream 128327 43152395 ~ 43175237 (-)
LOC110521850 LOC106583957 coding downstream 158584 43140718 ~ 43144980 (-)
LOC118945796 NA coding downstream 168976 43133273 ~ 43134588 (-)
LOC110521857 LOC106583932 coding upstream 16308 43333715 ~ 43400846 (-)
adgrl4 adgrl4 coding upstream 121408 43438815 ~ 43465879 (-)
LOC110521860 NA coding upstream 182139 43499546 ~ 43509627 (-)
LOC110521869 LOC106583934 coding upstream 332810 43650217 ~ 43657562 (-)
LOC100272218 LOC106583950 coding upstream 370064 43687471 ~ 43808324 (-)
G2238465 NA non-coding downstream 156812 43146481 ~ 43146752 (-)
G2238464 NA non-coding downstream 157131 43146151 ~ 43146433 (-)
G2238463 NA non-coding downstream 157561 43145735 ~ 43146003 (-)
G2238452 NA non-coding downstream 173889 43129416 ~ 43129675 (-)
G2238336 NA non-coding downstream 240050 43055116 ~ 43063514 (-)
G2238603 NA non-coding upstream 95211 43412618 ~ 43413780 (-)
G2238609 NA non-coding upstream 98046 43415453 ~ 43415671 (-)
G2238610 NA non-coding upstream 98767 43416174 ~ 43416543 (-)
G2238983 LOC100136747 non-coding upstream 206669 43524076 ~ 43637339 (-)
G2238984 LOC100136747 non-coding upstream 257510 43574917 ~ 43590092 (-)
G2237814 NA other downstream 559972 42742894 ~ 42743592 (-)
G2237502 NA other downstream 1022202 42280756 ~ 42281362 (-)
G2234837 NA other downstream 3017282 40285654 ~ 40286282 (-)
G2234611 NA other downstream 3309650 39956915 ~ 39993914 (-)
LOC110521806 NA other downstream 4446873 38838904 ~ 38856693 (-)
G2239635 LOC106583937 other upstream 964729 44282136 ~ 44283368 (-)
G2240022 aldoa other upstream 1412826 44721963 ~ 44733310 (-)
LOC110521015 LOC106583894 other upstream 1652315 44950503 ~ 45003269 (-)
LOC110521929 LOC106583891 other upstream 2557864 45875271 ~ 45885821 (-)
G2241718 NA other upstream 2974503 46291910 ~ 46301730 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
striped catfish (Pangasianodon hypophthalmus) G180877 NA non-coding NC_047605.1 CM018551.1 13426731 ~ 13430173 (-)
mexican tetra (Astyanax mexicanus) G45132 rpl36,LOC106560598 non-coding NC_035901.1 CM008304.1 26340026 ~ 26342703 (+)