G180877


Basic Information

Item Value
gene id G180877
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 13426731 ~ 13430173 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU214092
AAAACTGTAAGGAAAACACAGGCAAAACTGTAGATTtgtaaatacaaatttatttgtCCAACAATACAGGTTACTCCTTCTTGGCAGCTGCCTTTCTCATTGCAGCCAGAATGTTGCTGAGctcttccctctttctcttgGCACGGATGTGAGTTCCCACCTTTTCTTAATGAACTTGAGGGCACGCTTGTCTTTGGACACCTTCAGCAACTCCATAGCACGCCTTTCGTAGGGGGCGAAGCCACACACCTCGCGGATCATGTCACGCACAAACTTGCTGTGCTTGGTCAAACGCTGGGGACGGAAAGGACATTATTAGAAGATCTGAACAGCCCTCATCTGCCCATATTTGAGTTTCATACATGACACTAAATTATATCGCAATATACTTCTCtagtattaaagtattaaagacATTAATCTTATTACAGCTAGAGATAGTACAATACCACTTTTCCTTTTCAGATACAGAAATCTTGACCATCAACCAATACTCAgctaatattttctttaaaaatgacaaaatcatatttttaaatgaatttcaaagttatatttcttttccaaattcaattccaatcttttccatttgttacaggatctgataTCTAATGTTTTCGCTGATATctaatgcactttttttttggtatcgGACCGGTGTCATCTCTAGTTACAAGTCACTGATCATTTGTGCACTTATGTAGACACAACAtaatcctttctttttttaattaaatttgacGCTACTCTTCTGATAgtgttttgttagcaaacctaaatatttGGCACATATGcactataaaaattataaagtaattatcatactgATGTTATTTTGCATGAAGTCCAAGTGTTTAAATCCAATAATGACTTGTGTTCAATCCAATGATCCAAAAATGTTCTTAACAGTCTAGATATCAGGAGCTGATCATGTCTATATGGAGTtcagcagtttggtgatttcttGACCAAACAACTACAAAACCTGataatcaggtgtgttaaaacagaaaacagtcaCCAAACAGTGTTGGACTGTGTATGTATGCGTATGTATGGAGGACCAAAGTGGGTGCTTCAGGTCCACGCAAcaagggctgggcaatatgctGATATAACATGGATATCATGAAGAACTGTGTCACAATATACTTTGAAGTATCCTtatgctttacatttttaaataatttgttattgTAGACACTGTAGAAATTGTAGACACTGTAGACAAGTTTGACAGTTGGTTATCAAACCTATTTTACATGATGCAATATTGTgcatcatagaaatgtcttcaagtatcatgATCAACTCAAACCATCATGtacaataacacttttttttttttttttaaataattaaacagtaTTTTCTAACACATTCTTACCCCTCTCCTGCGGCTGTGCCTGGGCTTGGTCACATTCTTGGTCACTGGGTGGCCTTTTTTAAGGCCAACTGCCATAGGATAGCGAATAGCCATTTCTGTGGAGAACAAAAAAAGGTATGAGTAAATGACTTACAGGCGGCTGAGGCACTTACTGTCAAAATCATACTGATGTCTCAAAGCTTTTGACTTGGACACAATGGATAAATCTGACATAGCAATTGTAGACACTTGCTAAACACTAACAACATCCTATTCCCTAGAAAATCTcactgtatagtgtatagaaaTCACTGTGGGaggatttgggacacagccggTGTTTAACATTACTGCAGGCTGATGGAGGATTGCTTTCCAGCTCCTAAACCATGGTTTTTACCCAACTCTGGTTAGTTACATCattgttttacacttttttgtaGTATACTGTCCTTAAGCGTGGTTTAATGTCAGTTTAATAAAGATATATTCAAACATATCCGCATAAAAAGCGGTGTACACTCCATGTTCCTTCAACAACCATCTAAACTCAGAAAGCCTTTAAAACCAACCACAATGGCGACACGACGCTGTTCTATATGTATTTAATTTGTAGGTGAAACAGTAAgtattgttattaatgttagGATTGCAATGATATATGAAAGATTACAAATACTATAACGCTCAAACGATTCATACCTGCGTTTTCTAATGGCGTCCAAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU214092 True 2093 lncRNA 0.36 2 13426731 13430173

Neighbor

gene id symbol gene type direction distance location
lmnb2 lmnb2 coding downstream 2309 13405769 ~ 13424422 (-)
ing5a ing5,LOC108424972,LOC105898337 coding downstream 109136 13310779 ~ 13317595 (-)
pigx pigx coding downstream 118414 13303501 ~ 13308317 (-)
pak2b pak2,LOC107741800,LOC107678112,LOC107679089 coding downstream 124365 13286632 ~ 13302366 (-)
trnam-cau_27 NA coding downstream 190256 13236403 ~ 13236475 (-)
lonp1 lonp1,LOC107744642,LOC107679084,LOC107548847 coding upstream 1910 13432083 ~ 13446927 (-)
si:zfos-943e10.1 LOC108270864,LOC103026993 coding upstream 40414 13470587 ~ 13491174 (-)
tbxa2r nup160,LOC108271239 coding upstream 86510 13516683 ~ 13527764 (-)
kdm4b kdm4b,LOC108271011,LOC107717157,LOC105011321,LOC106574093 coding upstream 667481 14097654 ~ 14160605 (-)
uhrf1 uhrf1 coding upstream 734993 14165166 ~ 14179580 (-)
G180819 NA non-coding downstream 153789 13251418 ~ 13272942 (-)
G180793 NA non-coding downstream 250711 13094163 ~ 13176020 (-)
G180783 tpm4,tpm1,LOC103156889,LOC106946143,LOC106929302 non-coding downstream 299293 13069936 ~ 13127438 (-)
G180628 NA non-coding downstream 378031 12989773 ~ 13048700 (-)
G180627 NA non-coding downstream 439208 12986787 ~ 12987523 (-)
G181047 NA non-coding upstream 80278 13510451 ~ 13521721 (-)
G181062 NA non-coding upstream 288150 13718323 ~ 13719757 (-)
G181128 NA non-coding upstream 625235 14055408 ~ 14055615 (-)
G181197 NA non-coding upstream 650326 14080499 ~ 14124923 (-)
G181205 NA non-coding upstream 706281 14136454 ~ 14136955 (-)
rpp21 LOC108271386 other downstream 183531 13239723 ~ 13243200 (-)
rc3h1a rc3h1,LOC108429496 other downstream 644196 12752078 ~ 12782535 (-)
G180485 s1pr1,LOC107715096,LOC107592715 other downstream 706255 12717361 ~ 12720476 (-)
ncln ncln other downstream 1394725 12020412 ~ 12032006 (-)
fxr1 fxr1 other downstream 1537582 11862989 ~ 11889149 (-)
ptprsa ptprs,ptprd,LOC107559826,LOC107679075 other upstream 116741 13546914 ~ 13783127 (-)
LOC113527598 LOC108271251,LOC108441295,LOC107742801 other upstream 928347 14358520 ~ 14361647 (-)
rx1 LOC108270609 other upstream 978553 14408726 ~ 14415069 (-)
zfr2 zfr2,LOC108271074,LOC107742797,LOC108430234 other upstream 1007187 14437360 ~ 14460337 (-)
LOC113532209 LOC108271183 other upstream 1056947 14487120 ~ 14493859 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G2238469 rpl36 non-coding NC_050570.1 CM025857.1 43303564 ~ 43317407 (-)
mexican tetra (Astyanax mexicanus) G45132 rpl36,LOC106560598 non-coding NC_035901.1 CM008304.1 26340026 ~ 26342703 (+)