pigx (pigx)


Basic Information

Item Value
gene id pigx
gene name pigx
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 13303501 ~ 13308317 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026947751.2
GTGTAAAAGCTTGGACGACGTGTTTAACACAACACGATTAGgaagaatataagaatataaatgaTCGTGGACTAGTCGCAATTAGTCGTGGACCTTGTGCATAGCAAATTTGTCTTCCTTAAACACGCACTACATACGGTTGGAGCCTGTTTAGTGCGCCTGTATAGGGAGAGTGTAGGAATTAGAGATTCACCCAGTGTCAGTGACATGAGTCGACCATGCTAAGCTTATACTTTATAGtcactgtgttgtgttttattttttgtggagCTTCACAGAAAGATGGTGTCGATTGTGGTTTTGCATCCTCTTGGCTTGAATCAGTGGTCCTGTCGGTGAAGCTTACTAAACAAGGCTTCCACAGGGACCTTGTTTATGAGGTTCGACATGAGCCTACATCACATCCTGTCAAGGCTTTGCTTCTTCACAGATTGCCTAATGGCGTTTACATGGATCAGTATCAGCTTGCAGATCTGAGGGAGGAAATGGGATTACAGGTGCTTCTTGATTCAGTTTTGGATCTCGAGGGCCCGGCCCACATTTCTTCTGCTTTCTCTGCACTGGTCTTTCTCAGTCCTCCTGAGCCTCTGCAGGCAGCAGTTCCTGTCCATGGCCGGTACCACAAGGCATCCAGTTCAGGAGGATGGGAACGAGTAATCATCGAACCACCAAGACTGCTGCTTCGCTCAGAACACTGTGACACTGTAGACCCTGGATTACCACACAGGGTGGTCGATGCTCCTTGCACAAGTCAGAACCAGAGTTGGTGCTTATGGCTGGAGATCCATGGATTACAGGTGCCAAGTCTGAGTCTCGAGCTTCCAGTGGGCGATTCCTCTCTGAACCTCCCTGTGTGTGCTGTAACAACACTGGTGTCTCTGCTGTGTAGTGCTTTTCTCTTCAGGGCTGTCTGGAAACATGGCGTCTTCTGAAACTGAAACTATAACAGTCCAAAAAAGTGTCATATTCTCATGAGCAACTGTACAGTTACAAGCCTGTGTTAATCATAAATGTCTGT

Function

symbol description
pigx Predicted to act upstream of or within GPI anchor biosynthetic process. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Orthologous to human PIGX (phosphatidylinositol glycan anchor biosynthesis class X).

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K07541 PIGX; GPI mannosyltransferase 1 subunit X

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026947751.2 True 1018 mRNA 0.47 6 13303501 13308317

Neighbor

gene id symbol gene type direction distance location
pak2b pak2,LOC107741800,LOC107678112,LOC107679089 coding downstream 1135 13286632 ~ 13302366 (-)
trnam-cau_27 NA coding downstream 67026 13236403 ~ 13236475 (-)
gpc5b LOC108270519 coding downstream 72378 13158387 ~ 13231123 (-)
gpc1a gpc1,LOC108424978 coding downstream 147483 13111812 ~ 13156018 (-)
lpl lpl,LOC108271131,LOC107588078,LOC107665505,LOC107561902,LOC107715086 coding downstream 256653 13037990 ~ 13046848 (-)
ing5a ing5,LOC108424972,LOC105898337 coding upstream 2462 13310779 ~ 13317595 (-)
lmnb2 lmnb2 coding upstream 97452 13405769 ~ 13424422 (-)
lonp1 lonp1,LOC107744642,LOC107679084,LOC107548847 coding upstream 123766 13432083 ~ 13446927 (-)
si:zfos-943e10.1 LOC108270864,LOC103026993 coding upstream 162270 13470587 ~ 13491174 (-)
tbxa2r nup160,LOC108271239 coding upstream 208366 13516683 ~ 13527764 (-)
G180819 NA non-coding downstream 30559 13251418 ~ 13272942 (-)
G180793 NA non-coding downstream 127481 13094163 ~ 13176020 (-)
G180783 tpm4,tpm1,LOC103156889,LOC106946143,LOC106929302 non-coding downstream 176063 13069936 ~ 13127438 (-)
G180628 NA non-coding downstream 254801 12989773 ~ 13048700 (-)
G180627 NA non-coding downstream 315978 12986787 ~ 12987523 (-)
G180877 NA non-coding upstream 118414 13426731 ~ 13430173 (-)
G181047 NA non-coding upstream 202134 13510451 ~ 13521721 (-)
G181062 NA non-coding upstream 410006 13718323 ~ 13719757 (-)
G181128 NA non-coding upstream 747091 14055408 ~ 14055615 (-)
G181197 NA non-coding upstream 772182 14080499 ~ 14124923 (-)
rpp21 LOC108271386 other downstream 60301 13239723 ~ 13243200 (-)
rc3h1a rc3h1,LOC108429496 other downstream 520966 12752078 ~ 12782535 (-)
G180485 s1pr1,LOC107715096,LOC107592715 other downstream 583025 12717361 ~ 12720476 (-)
ncln ncln other downstream 1271495 12020412 ~ 12032006 (-)
fxr1 fxr1 other downstream 1414352 11862989 ~ 11889149 (-)
ptprsa ptprs,ptprd,LOC107559826,LOC107679075 other upstream 238597 13546914 ~ 13783127 (-)
LOC113527598 LOC108271251,LOC108441295,LOC107742801 other upstream 1050203 14358520 ~ 14361647 (-)
rx1 LOC108270609 other upstream 1100409 14408726 ~ 14415069 (-)
zfr2 zfr2,LOC108271074,LOC107742797,LOC108430234 other upstream 1129043 14437360 ~ 14460337 (-)
LOC113532209 LOC108271183 other upstream 1178803 14487120 ~ 14493859 (-)

Expression


Co-expression Network