G181062


Basic Information

Item Value
gene id G181062
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 13718323 ~ 13719757 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU214309
CTGAATCTTAAAGCATTGAGTAGGAGGTGGAAGAAAGTGTGAGGTCGTTCTTGGATTTGGCAGCGCTGCTCCAGGAGCTTAAGGTCAAAAACTAGCTGTGTTCTTGAGGTGCATATGACTCAGTTAAGAGTGTTTGAAGTGGGAGTTATTTTGCCCCTAGCTAGATCTTGTGGATTATGTGGTACTACACTATGACCTTAGAACGTGCACTGTTTGATATTTTTGTCTCTGAAAAAGTCTTTAATCATGCACAGATCAAGACTGTAGTTATTTCTTAACAGGCACTAATAAATACTACATGAGTTCGTTATTTTAATGTAGTCTACATCATTGATATGTCTACACTAATTTCTTCTTGCATTCTCGTATAGATTGGCGTTATCTTCTCCCAACAAAGTTCAATTCCAATATCGAGGTTAATAAGTGCaaagaacagagaaagaaagcttgcgtgtctcagtgctcgcagaacggGACTGCTCTCATGTCATTTTCAGGTAATCTGCTTGAGATTACCTCTGTAACAGAAATTGAAACAGAATCGGATCCCTAACTCGGACAGTTTTTTCATTCTGAAATGCGAGGGAAATGCTCACACTGTAGAGCCTTACTCACTCCAAGTCTGCAGTACATCTCCAACTCAGACAGGAGCGTTCTCCATTCTAGGTAACTTGGCAAGAAATCATTCCCAGGAACACAACTACATTCTTCACATTCTTGGCTCCGTGTCCATGAGCAgtgatttttaatcattaatgctGACTATCAGAGAGGACTACATGGTTGAGTGCGCCATGCACTCAGGGGATTCGGCTTTCGTAAGCCCTAACGATGACGGAGATTTCCTCAGACAAGCACTTCGAAACCGTTTTCACAATGCTCAACTCCACAggcttcacacacactcgtctGAAGTAAGCGGTTAGTTGACTGtgctttgtctttttctttgaaAGATGATGTCATCATGATATTGATTTCTCCAACGTGCCAGTTGCGCTCACATGCGTGAAGCTCGCTCagatacacatgcacatgcacacgtGAACTTGCATAAGAATGAGAGAGTCTAagtgaagacacacacacacacacacacacacacacacaggggagcTGGATCTTGCTGCCTGCTTCACTAAGCCTGAATTAAGCACAGGCTGCCCTGTAGAGTGGAGTGTaagaagagagagggggaggacCACCACAATGACGCTGTAGTCTCGAAGCCTCAATCACTTCAGCGTTTCAGTTCTCTTTGTTCTGTGTGCTTTTATATCCTATGTGGGCGAACGGCTCGTGTTCTTACCTCCATGTTGCTTGGGaggtctgtgtgtttttccctcAGGGTTGAGCAGCCATTAAAGTCTgggtgtgcatgcgtgtgtctatgtgtggg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU214309 True 1399 lncRNA 0.44 2 13718323 13719757

Neighbor

gene id symbol gene type direction distance location
tbxa2r nup160,LOC108271239 coding downstream 190559 13516683 ~ 13527764 (-)
si:zfos-943e10.1 LOC108270864,LOC103026993 coding downstream 227149 13470587 ~ 13491174 (-)
lonp1 lonp1,LOC107744642,LOC107679084,LOC107548847 coding downstream 271396 13432083 ~ 13446927 (-)
lmnb2 lmnb2 coding downstream 293901 13405769 ~ 13424422 (-)
ing5a ing5,LOC108424972,LOC105898337 coding downstream 400728 13310779 ~ 13317595 (-)
kdm4b kdm4b,LOC108271011,LOC107717157,LOC105011321,LOC106574093 coding upstream 377897 14097654 ~ 14160605 (-)
uhrf1 uhrf1 coding upstream 445409 14165166 ~ 14179580 (-)
fbn2b fbn3,fbn2b,LOC108441289,LOC106573567,LOC106613712 coding upstream 521546 14241303 ~ 14317837 (-)
rad23ab LOC108271249,LOC107704496,LOC107717165 coding upstream 642566 14362323 ~ 14374028 (-)
calr3a calr3,calr3a,LOC107702625,LOC107717161,LOC107561598 coding upstream 655728 14375485 ~ 14382765 (-)
G181047 NA non-coding downstream 196602 13510451 ~ 13521721 (-)
G180877 NA non-coding downstream 288150 13426731 ~ 13430173 (-)
G180819 NA non-coding downstream 445381 13251418 ~ 13272942 (-)
G180793 NA non-coding downstream 542303 13094163 ~ 13176020 (-)
G180783 tpm4,tpm1,LOC103156889,LOC106946143,LOC106929302 non-coding downstream 590885 13069936 ~ 13127438 (-)
G181128 NA non-coding upstream 335651 14055408 ~ 14055615 (-)
G181197 NA non-coding upstream 360742 14080499 ~ 14124923 (-)
G181205 NA non-coding upstream 416697 14136454 ~ 14136955 (-)
G181207 NA non-coding upstream 436746 14156503 ~ 14203731 (-)
G181298 NA non-coding upstream 715544 14435301 ~ 14435614 (-)
rpp21 LOC108271386 other downstream 475123 13239723 ~ 13243200 (-)
rc3h1a rc3h1,LOC108429496 other downstream 935788 12752078 ~ 12782535 (-)
G180485 s1pr1,LOC107715096,LOC107592715 other downstream 997847 12717361 ~ 12720476 (-)
ncln ncln other downstream 1686317 12020412 ~ 12032006 (-)
fxr1 fxr1 other downstream 1829174 11862989 ~ 11889149 (-)
LOC113527598 LOC108271251,LOC108441295,LOC107742801 other upstream 638763 14358520 ~ 14361647 (-)
rx1 LOC108270609 other upstream 688969 14408726 ~ 14415069 (-)
zfr2 zfr2,LOC108271074,LOC107742797,LOC108430234 other upstream 717603 14437360 ~ 14460337 (-)
LOC113532209 LOC108271183 other upstream 767363 14487120 ~ 14493859 (-)
tnfaip8l1 tnfaip8l1,LOC107702643,LOC107727554,LOC107698600 other upstream 777393 14497150 ~ 14507610 (-)

Expression


Co-expression Network