lonp1 (lonp1,LOC107744642,LOC107679084,LOC107548847)


Basic Information

Item Value
gene id lonp1
gene name lonp1,LOC107744642,LOC107679084,LOC107548847
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 13432083 ~ 13446927 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026942022.2
GAAGTGGGGAAGTTGCCCGTAGAACACTCGAGATCAACATGGCTGCGTACATGAAGATGTGGAGCAGGTACAGGCAGGCGTATAAAAACGGGACCCTCTTCTGTAGCAAGTACATTAAAAAGCCTGCTTCTGAGATTAATGGAGTTTATCCGGGAGAGTCGCTCAGCCGGAGCGGATTCACCGCAAACCGATCACATTCTTATGTTTCATATAAAAAGTCACAGTTGTGTAGTGGCACCTTCAGCACCATCACATCAGTGACAGGACCTGCGCGCGCGACAGATCTGAGAAAATGGACCAGAATCGCCGGTGTGCTTCCGCCTGGCAGGGGAAGTGTAGGAGCTGGCATGTTTATGAACCACGACCAGAGGAGATACCTGTTCGGCAACAGGGGCAGCGGCCTGCCGGGAGAGGATGGAGCTGAAAGCAGCAGTCCTAATGACGATGAACCCGGTGGAGATGGAGCAGAGTCCGGGTCTGCTCCCCCGCACATCACCGCTCTCACGCCCATGATGGTGCCGGAAGTGTTTCCCAACGTGCCGCTCATCGCTGTGACCAGAAACCCGGTTTTCCCACGCTTCATCAAGATCATCGAGGTGAAGAATAAGCAGCTGATGGATCTGCTGAGGAGAAAAGTGCGACTTGCTCAGCCCTACGCTGGCGTCTTCCTCAAGAAGGATGATAATGATGAGTCGgatgttgtggaaagtctggACGCTGTTTACAACACGGGAACTTTTGTTCAGATCCACGAGATGCAAGATCTCGGTGACAAACTGCGCATGATCGTGATGGGACACCGAAGGATTCGGATCACAAAGCAGCTGGAAGTCGAGGCTGAGGACGCGTCCCTCACGCTGGAGTCAGATGCTGAACAGGCCAGAGTTCAGCGGAGAAAATCCAAGCGTGTTCGGAAGGACTCGTCGTCTCTGGCTGAGGAGATGACGGAGAGAGTGAAGGAAGCAGAGTTCGTGGTGGAGGCTGTTCCTTTACCCACGAGCAACGAGGTCCTGATGGTGGAGGTCGACAACGTCATACACGAGGAGTTCCAGGTCACAGAGGAGGTTAAGGCTCTGACAGCCGAGATTGTTAAGACCATCCGTGACATCATTGCTCTGAACCCTCTTTACAGAGAATCAGTTCTGCAGATGATGCAGGCAGGACAGAGAGTAGTTGATAACCCCATTTACCTGAGTGACATGGGAGCTGCTCTGACCGGCGCAGAGTCACACGAGCTACAGGACGTTCTGGAGGAAACCAGTATCCCCAAACGCTTGTACAAGGCTCTGTCTCTGCTGAAGAAGGAGTACGAGTTGAGTAAACTGCAGCAGCGCCTCGGCAGGGAGGTGGAGGAGAAAATCAAACAGACGCACAGGAAGTACCTCCTGCAGGAGCAGCTGAAGATCATCAAGAAAGAGCTGGGCCTGGAGAAGGAGGACAAGGACGCCATCGAGGAGAAGTTCAGAGAGAGGCTGAAGGAGCGCACCGTACCACACATCATGGAGGTCATTAATGAGGAGCTGAACAAACTCAGTCTTCTGGATAATCATTCCTCTGAGTTCAATGTTACGAGAAACTACTTGGACTGGTTGACCTCGATGCCATGGGGCACCAACAGCGTGGAGAACCTGGAGCTGGCTCGAGCCAGAGAGGTGCTGGAAGAAGATCATTACGGCATGGAGGATGTGAAGAAGCGCATTCTCGAGTTTATTGCAGTTAGCCAGCTGAGAGGCAGCACACAGGGGAAGATCCTGTGTTTCTACGGACCACCCGGTGTGGGAAAGACCAGCATCGCCCGCTCCATCGCTAGAGCCCTAAACCGAGAGTACTTCCGCTTCAGCGTGGGCGGCATGACCGACGTAGCTGAAATCAAAGGCCACAGGAGGACATATGTTGGAGCGATGCCAGGAAAAATCATCCAGTGTCTGAAGAAGACGAAAACAGAAAACCCGCTAGTTCTCATTGACGAGGTGGATAAAATAGGTAGAGGCTACCAGGGGGATCCATCTTCTGCCCTGCTGGAGCTTTTAGACCCTGAGCAGAACGCAAACTTCCTGGATCACTACCTGGATGTTCCTGTGGATCTGTCTAAGGTTCTATTTATTTGCACTGCCAATGTGATTGACACCATTCCCGAACCTCTGAGAGACCGAATGGAAATGATCAATGTGTCTGGCTATGTGGCTCAGGAGAAATTAGCCATTGCAGAGAGGTATCTGGTGCCCCAGTTGCAGACTCTTTGTGGTTTGGATGAGCAGAAGACCAGCATCTCCTCAGAGGCTCTGAACGTTCTTATCAGGCAGTATTGCAGAGAGAGTGGCGTCAGGAACCTGCAGAAACAGGTGGAGAAGGTTTTCCGGAAAGCTGCATTCCGTATTGTTAATGGCGAGGAGGATGCAGTCAGAGTGACAGCTGACAATCTGCAGGATTACGTTGGCAAACCCCTGTTCACTGTAGACCGAATGTATGACGTCACACCCCCGGGGGTGGTCATGGGCTTGGCATGGACAGCCATGGGTGGCTCCACGCTGTTCATCGAGACGTCTTTGAGGCGTCCAAGGACCTCAAAGGAAAAAGACGGACCCGCAGAAGGCTCTCTAGAGGTGACAGGGCAGCTGGGAGATGTGATGAAGGAGAGCGCTAAAATCGCCTACACCTTCGCTCGCTCCTTCCTCATGAAGCAACAGCCGGAGAATGACTTCCTCGTGGGCTCCCACCTCCACCTGCATGTGCCAGAAGGTGCCACTCCTAAAGACGGACCTAGTGCAGGCTGCACTATAATCACGGCTCTGCTGTCCTTGGCCACCAACACGCCAGTGCGGCAGAATGTGGCCATGACGGGAGAAGTGTCCCTGACTGGAAAGATCCTGCCTGTCGGAGGAATCAAGGAAAAAACTATTGCTGCAAAGAGAGCTGGAGTGGATTGCCTCATCCTCCCTGCTGAAAACAAGAAAGATTTCTCTGACCTGGCTGAGTACATCACAGAGGGCCTGGAGGTGCACTTTGTTGAACATTACCAAGAAATCTACAAGATTGTGTTCACTGGCCAATGAAGAACATCTGAACTGTTATTTAATCTGCTATAATTAAGTTCCTGGTATTTGTCCACACTGATGCCCACCAAGTTTCGTTAAACCCCAGCAGTGTGACTGATGTAGAGTTCACATTCTCTTCTTCAGTGTCAGAAAGCTGGCAACTGAACACTGACGTATCTGTAAATCCCAGATATGTACCACAAGACACTGGGATTGTGTTATTGCTGCTACGCAGCCATTAAACCACCTTGTTTTGAAACAGGTTATACTGcgatggaagaaaaaaaacatttcacaacctgca

Function

symbol description
lonp1 Predicted to enable ATP-dependent peptidase activity and single-stranded DNA binding activity. Predicted to be involved in chaperone-mediated protein complex assembly; mitochondrion organization; and protein quality control for misfolded or incompletely synthesized proteins. Predicted to act upstream of or within protein catabolic process and proteolysis. Predicted to be located in mitochondrion. Predicted to be active in mitochondrial matrix. Human ortholog(s) of this gene implicated in CODAS syndrome. Orthologous to human LONP1 (lon peptidase 1, mitochondrial).

NR:

description
lon protease homolog, mitochondrial

GO: NA

KEGG:

id description
K08675 PRSS15, PIM1; ATP-dependent Lon protease

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026942022.2 True 3339 mRNA 0.52 19 13432083 13446927

Neighbor

gene id symbol gene type direction distance location
lmnb2 lmnb2 coding downstream 7661 13405769 ~ 13424422 (-)
ing5a ing5,LOC108424972,LOC105898337 coding downstream 114488 13310779 ~ 13317595 (-)
pigx pigx coding downstream 123766 13303501 ~ 13308317 (-)
pak2b pak2,LOC107741800,LOC107678112,LOC107679089 coding downstream 129717 13286632 ~ 13302366 (-)
trnam-cau_27 NA coding downstream 195608 13236403 ~ 13236475 (-)
si:zfos-943e10.1 LOC108270864,LOC103026993 coding upstream 23660 13470587 ~ 13491174 (-)
tbxa2r nup160,LOC108271239 coding upstream 69756 13516683 ~ 13527764 (-)
kdm4b kdm4b,LOC108271011,LOC107717157,LOC105011321,LOC106574093 coding upstream 650727 14097654 ~ 14160605 (-)
uhrf1 uhrf1 coding upstream 718239 14165166 ~ 14179580 (-)
fbn2b fbn3,fbn2b,LOC108441289,LOC106573567,LOC106613712 coding upstream 794376 14241303 ~ 14317837 (-)
G180877 NA non-coding downstream 1910 13426731 ~ 13430173 (-)
G180819 NA non-coding downstream 159141 13251418 ~ 13272942 (-)
G180793 NA non-coding downstream 256063 13094163 ~ 13176020 (-)
G180783 tpm4,tpm1,LOC103156889,LOC106946143,LOC106929302 non-coding downstream 304645 13069936 ~ 13127438 (-)
G180628 NA non-coding downstream 383383 12989773 ~ 13048700 (-)
G181047 NA non-coding upstream 63524 13510451 ~ 13521721 (-)
G181062 NA non-coding upstream 271396 13718323 ~ 13719757 (-)
G181128 NA non-coding upstream 608481 14055408 ~ 14055615 (-)
G181197 NA non-coding upstream 633572 14080499 ~ 14124923 (-)
G181205 NA non-coding upstream 689527 14136454 ~ 14136955 (-)
rpp21 LOC108271386 other downstream 188883 13239723 ~ 13243200 (-)
rc3h1a rc3h1,LOC108429496 other downstream 649548 12752078 ~ 12782535 (-)
G180485 s1pr1,LOC107715096,LOC107592715 other downstream 711607 12717361 ~ 12720476 (-)
ncln ncln other downstream 1400077 12020412 ~ 12032006 (-)
fxr1 fxr1 other downstream 1542934 11862989 ~ 11889149 (-)
ptprsa ptprs,ptprd,LOC107559826,LOC107679075 other upstream 99987 13546914 ~ 13783127 (-)
LOC113527598 LOC108271251,LOC108441295,LOC107742801 other upstream 911593 14358520 ~ 14361647 (-)
rx1 LOC108270609 other upstream 961799 14408726 ~ 14415069 (-)
zfr2 zfr2,LOC108271074,LOC107742797,LOC108430234 other upstream 990433 14437360 ~ 14460337 (-)
LOC113532209 LOC108271183 other upstream 1040193 14487120 ~ 14493859 (-)

Expression


Co-expression Network