G181197


Basic Information

Item Value
gene id G181197
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 14080499 ~ 14124923 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU214468
GCATATCTCTCATCATCCCCCTCCCAAATATTTATACACTTGCAGTCTTTCTTATGGAGGTAGTTCCTGCATGGTGATGGTGGGAGTTCCCAATTCCTTTAAAAGCCTCCCTACCCCcattttcccctctttctttctggtCTCAGCTCAGCAGAAAAAATACAGTACTCCAATGAGCACTATGGAGGAGGTGTACAGTTGTTATTGCTTTGCGGCTAGTGcttgttgttatggttattaacaccatgcacacacactggtatATAGAGCTGTTCACTCCAGTATTGTTGCCTGCTGCTTTGCGGTGAAATGTTTCCCGTGATTTAACACAAGGTTCTCATAGTGGGGAGAAAATAATGGCCATATGTAATATAGAGGACAGACACTTCTGAgaaaattagttttattttcatctctCGTTCCTTGTCTTGCTGTTGCTCTCTcgctgttttttatttttatttctcctgatAAGTTTGATAATCACACCCTCTCATCCCGATTGGCTGCGGTGTttaacacacagaaaacacctGCCAGCAAAGCCTAATGTCAGAATGGTGGTTAAATCCATCACTGAAAATGGAGGCTACTGTTTCTGTATTGACTATTCAGAATGATGTAGAACATCAACAAACCTGCTACCAGATAACGGATTATTGCATTCTGGTATACCAAGTGTCAGTTTAGACATTATCTACTATCTAATGATCAGCGGACTGCAAACTGCAGTAAAAAGCTGTGAACATGGCTTGTTTTTttttgttttttttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU214468 True 774 lncRNA 0.40 2 14080499 14124923

Neighbor

gene id symbol gene type direction distance location
tbxa2r nup160,LOC108271239 coding downstream 552735 13516683 ~ 13527764 (-)
si:zfos-943e10.1 LOC108270864,LOC103026993 coding downstream 589325 13470587 ~ 13491174 (-)
lonp1 lonp1,LOC107744642,LOC107679084,LOC107548847 coding downstream 633572 13432083 ~ 13446927 (-)
lmnb2 lmnb2 coding downstream 656077 13405769 ~ 13424422 (-)
ing5a ing5,LOC108424972,LOC105898337 coding downstream 762904 13310779 ~ 13317595 (-)
uhrf1 uhrf1 coding upstream 40243 14165166 ~ 14179580 (-)
fbn2b fbn3,fbn2b,LOC108441289,LOC106573567,LOC106613712 coding upstream 116380 14241303 ~ 14317837 (-)
rad23ab LOC108271249,LOC107704496,LOC107717165 coding upstream 237400 14362323 ~ 14374028 (-)
calr3a calr3,calr3a,LOC107702625,LOC107717161,LOC107561598 coding upstream 250562 14375485 ~ 14382765 (-)
cherp cherp coding upstream 265608 14390531 ~ 14405495 (-)
G181128 NA non-coding downstream 24884 14055408 ~ 14055615 (-)
G181062 NA non-coding downstream 360742 13718323 ~ 13719757 (-)
G181047 NA non-coding downstream 558778 13510451 ~ 13521721 (-)
G180877 NA non-coding downstream 650326 13426731 ~ 13430173 (-)
G180819 NA non-coding downstream 807557 13251418 ~ 13272942 (-)
G181205 NA non-coding upstream 11531 14136454 ~ 14136955 (-)
G181207 NA non-coding upstream 31580 14156503 ~ 14203731 (-)
G181298 NA non-coding upstream 310378 14435301 ~ 14435614 (-)
G181401 NA non-coding upstream 356606 14481529 ~ 14483184 (-)
G181453 NA non-coding upstream 501512 14626435 ~ 14627355 (-)
ptprsa ptprs,ptprd,LOC107559826,LOC107679075 other downstream 297372 13546914 ~ 13783127 (-)
rpp21 LOC108271386 other downstream 837299 13239723 ~ 13243200 (-)
rc3h1a rc3h1,LOC108429496 other downstream 1297964 12752078 ~ 12782535 (-)
G180485 s1pr1,LOC107715096,LOC107592715 other downstream 1360023 12717361 ~ 12720476 (-)
ncln ncln other downstream 2048493 12020412 ~ 12032006 (-)
LOC113527598 LOC108271251,LOC108441295,LOC107742801 other upstream 233597 14358520 ~ 14361647 (-)
rx1 LOC108270609 other upstream 283803 14408726 ~ 14415069 (-)
zfr2 zfr2,LOC108271074,LOC107742797,LOC108430234 other upstream 312437 14437360 ~ 14460337 (-)
LOC113532209 LOC108271183 other upstream 362197 14487120 ~ 14493859 (-)
tnfaip8l1 tnfaip8l1,LOC107702643,LOC107727554,LOC107698600 other upstream 372227 14497150 ~ 14507610 (-)

Expression


Co-expression Network