rc3h1a (rc3h1,LOC108429496)


Basic Information

Item Value
gene id rc3h1a
gene name rc3h1,LOC108429496
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 12752078 ~ 12782535 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU213696
GTGAACGTATAAAGGCCTGAGAATCACTGCCTAGTGAGAAGctcatcattcattcactgtATGTACTTCATATTTCCAGAATGTTCTGAAAGGCTCAAGCGATACCATGATTAAGAGCTTGTACTGCTTAACAGCTACGTCTTGTTTAATCTCTAAACAAGTATTATGTTCAAGTGgctgacattatttaaaatacaaacaacTTCAGtgcattttgaaacattttatgaCCGAAAGAAATTCAGGCTTTGCACAGCATTATTCGGCTTTTTGAGCATGCAGTATTCACAGTAAAAAGAATAGTAAGAAAACAAAATAGGGTTAATGTGGCAAAAATATATCAATACACATAGTTATTTTAACAAAGTGCCAGCAAAATTATGGATGTGATATTTTCACAGTGTGTATAAAAGTGATTAtgtaacaacaaaaaagagggaaaattaaaaattcagtacaaaattagCAGTAATAGCGGAGCTATTCAGTGTTAATAATATTGATGCTTGCAATAGTAAGATTATTGATATTacatcatatcacccagctAGGAACTAGATTCTCTGAGGAAATCTGAATGCATTTGGCAGAAGTAAGTGTGTGGAAAGTGAACTACTGAATCCTGAATCCTGAAACCCTGAAACTGTTTGTATACTTAcagcaggggtggacaaatcagcaAGCGAGGCCACCAAGCAAGTAAAATCTCCAGTGTGCTGAAACCTAACTGAtaaggctaaaaagtggtagctaatgtaatgtaacaatgTATTGCAAGCTAGTTAGCTTGTTAAGTGCATTAAAACAGACTGAGAGAAACTGTTATCTTCTAAGAAAGTCtctaatgtagcacattgtgtttaCAGTGTCGACAGAATGTCAGCAAGTCTTGAAGTGAACATTTTGGTTGTGAGATGTAGCGTTATGTCCTCTCATTGCACAGTCTGTTTAGcaactttattttctcttaaataaaGAGGTGACTGTGTGTAGTAAACACATCGGCTTCATGCTGGActttattttgttcagttttgtcagtgtttccataAGCCTTACTGATTTTGAAAAGATCagtgcatgctaattaatccaatgagtaaaaataattttaccaTCAAGCAGATAACACCTTGAGTAGCGTGCGCTATAGTAACATCATCGAGATCTGTTATATGCcgtaatatgctttaagattaaacatacacactaatttaaaattttgtgaaagtcaataggaagtattttctttttcttgttgttgaacctacttgaACCAACTACGCATAAAAACTAGTATGAAAACTGCTTGTCCCAGGTCCCCGGGAAACCgatttgtccactcctgtgCTCAACTAGCTCCTTTTTCATCAACCAGCAATAATGCAGTATGTTAACAAgacttattttatatatatatatatataaactatgTAGTAGTATGTAGTATCACCAGAGCATTGATTTTCTGAGACTGTGGATGTTATGTAGCGTCAGACACAACCACCACTCACTGTTAGTGTGCACAGATTACTTAATTTCAACCACTTTCACATTATTATTCTAATATTAGGTAGATTTAAcaccttgtgtgtgtttatacactcTGAATGGCTGTTTAATGGCCATTCTGTGCTGCATCATTTAACACACCTATTTGGTGTGAAATTTAACTGTTGTTATTGCTTGTGCAAGAGCTTATGACATCttcattatatacattaatgcAGTGGAAGTGAACATTAGACCCTACTGTACAGATTTTGTGAGGTATTATGCGGAACCACTTTTGCACGCTTTCAATATGTCAGCATGTTACGCTTTTGTTCAGCGCTTGAGAGGAAACCGCAGTGCCTTGCACTTTTTACGTTGCGTCATCAGCCAGTTTGGTTGTTCATCTGATTGTAAATCTgcttttcagaaaaatgttttttaaggtCCATTTGCGATGtctgaatgagagagaaatttgatacttttggtttgttttctatttgatttgttttcacTTTAGTGCATATAATTAAACGAAccaaaaagggggaaaaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttttgtaggGCTGAAAATGTCTTCGTAAAACgtattcattggtcagaaatatgatGATGGAAAAATAGACAAACCTTCACCAAGTATATGTAAATGTCACAAAAATTACCCAAGCATGGAAAACAGtctttgctaaataaatgattagataattatataaataacaagtGTAAACATTGTGTTGCATCCAgcatttatcattttgtttatccaaatctccagaacgaTAAGCCTTCACTCTCTGGTCTAATGATTAATTCTTATGCGGTtttatgtgtgtgcgcgtgtgtgtaccTTTTCATTGTTGTGTAAGATTTGTATGTGAGACTGGTTTGAATTTGTTTCCTTACATGAAACGCAGTGATAAACTAGTCTCTTTCATGCAGAAGGGCTTCAGTTACTGACCTGCTGAAGGAATTGATCAGTCATTTAAAAACTGCTCAGCTGCAACTATTGTTGCAAAGCAACATCCACATTCAGCCTCCCATCAAGCAGTGGGAGAAACACCTTAAGTgtaaaagggagagaaaaaaaaggagcgACCATGTTTACCCATTGACTCAAAAAGTGTCATGTCTTATACTAATCAGTAACCAGGACAACGTCTCTCGTTTTCTGTagagaaatgtaaatgttgatCACATTTTCTGTGTAGTTTTCAttcagaacctttttttttttgatttgcgATAGTAATTTGTTTCAAACTCGTGTACAGCGAAGCAAGCTGATGTACAGAATTTTTTACACTCTGTCTCACAGATGGAGTGGGAGGGGCTTCCATGTGGACCAATGAGTGAGTGTTAAACAGGAAGTCGAGCGTCAGGCACACTTGCTCAGAGAAGCTCAGGAAAGACTCCTCActgacacaccacacacacacaaacacaggtgtTAGTGTTCAGCTCATAGACATAGGATGTTGTTTCAGAATTGATGATCATGTACGAGTCCCGATGGgagtgtttttgtctttttctttttgttcacGCTGAACATGCTCACTGCTTGCAGTcacctgttttttcttttttttccattgcatCTAGCTGTTCTTGCATttatgcatattattattttatttttttaaatgtgtaaatccTAACCTTGGGAAAATGTAATTGCTTTTGATTACTCTCAGGTTAGCTTATAAAAGATTGCTTAAATTAAGGTACACAAACCAACTGCAACATGAGTAAGAatttaagggtttttttaaatatatatatattatactccATTAAGGAATGTTTAGAACTATTTCTCCAATGTGGATTTAgctgaaccttttttttttctttgttaaaaattcACTGTGTGAAATTTTGGATTGCATTTTGTATAATACAATTGCTTTTCTTCATGGAATGGGGAAGGAAGGGGAACTGACTGGAAGGCTGAATTAgataaaacatgaaattatttaaaagtgtaaCTTAATGTGCAACAATAATTCTGTACTGGCAGGGA
>XM_026930262.2
TGTCTGTAGTTTTAGCCGAGCTGGTGCCGCTTTGCTGTAGCGCGCGCACATCCCCGTCGAGATGGTGactgaaatgaaatcatttaatttctCTATAGACGGCTGAAGAATGGcacaatttaaacaaatattGTTATGTATTCAGCACTGTGTGCTACAAGTCCACGATGCCTGAAGATATTTAAAACCACCGTTCAGAAGAGTGATTTGATTCCTGTGGAATCTATACAGCATTtggcctctgtttttttttattattattttgctgtatttgtttttaacaaaacGTACCCACGTTTGTGAGAGCGTGGATATCTGAACGTCACGTCGAAGACATCCTTTTTGGTCAACGATGCCCGTGCAAGCGCCGCAATGGACCGAGTTTCTGTTGTGTCCCATCTGCACACAGACGTTCGAGGAGAGTGTGCGCAAGCCCATCAGCCTGGGCTGCGGTCACACCGTCTGCAAGATGTGCCTGAACAAGCTGCACCGCAAAGCCTGCCCTTTTGACCAGACCACCATCAGCACAGACATCGAGCTTCTGCCCGTCAACACGGCGCTGCTGCAGCTCGTCTGCCCTCAGGTACCCAAGTCTCAGCCCGTCACCTTAGTGAAAGGAGTGGAGGACATCAAGCATTATGATGAAGCACGCACGTGTGTGGAGGAGCTGGCTCTCTACCTCAAACCCCTCAGCAACACCCGAGgTGTAGGGCTGGGCACTGCGAGTCAGAGTCTCCTCAGCAGACCCATGCAGAGGAAGCTGGTGACCCTGGTGCACTGCCagctggtggaggaggagggtCGTATCCGGGCCATGCGTGCCGCTCGCTCTCTGGGTGAACGCACAGTCACCGAGCTCATCCTGCAACACCAAAACCCCCAGCAGCTCTCTTCCAACCTGTGGGCCGCTGTCCGAGCTCGTGGCTGCCAGTTCCTCGGCCCTGCCATGCAGGAGGAGGCTCTGAAGTTGGTGCTGCTGGCGTTGGAGGATGGTTCGCCTCTGTCCCGCAAGGTTCTGGTTCTGTTTGTGGTCCAGAGGCTGGAGCCACGCTTCCCTCAAGCCTCTAAAACCAGTATAGGGCATGTCGTACAGCTGCTGTACAGAGCCTCATGTTTTAAGGTGACTAAGCGAGATGAGGACTCATCCCTGATGCAGCTAAAGGAAGAGTTCAGGACGTACGAGGCTCTGCGGAGAGAGCACGACTCCCAGATCGTGCAGATTGCCATGGAGGGAGGCCTGCGCATCGCCCCTGACCAGTGGTCCTCCCTACTCTATGGGGATCAGTCCCACAAGTCCCACATGCAGTCCATCATTGATAAGtTGCAGACCCCAGCCTCTTTTGCTCAGAGTGTACAGGAGCTCACCATTGCCCTGCAGAGAACAGGAGACCCAGCCAACCTCAACCGCCTCAGACCGCATTTAGAGCTGCTGGCTGACATCGACCCGAGCCCAGATGCCCCTGCCCCCACTTGGGAGCAGCTGGACAAAGGGCTGGTGGCTGTAAAGACAGTAGTGCATGGTCTTGTGGACTTCATCCAGAACCACAGCAAGAAGGCTGGAGACCCACAGCAGGCTCCTCAGCACAGCAAGTACAAGACGTACATGTGTAGAGACATGAAGCAGAAGGGAGGGTGTCCCAGAGGAGCCAGCTGCACCTTTGCCCATTCCCAGGAAGAGCTGGAAAAGTTCCGTAAGATGAACAAGCGTCTACCTTTGAGGAAGCCCCTCAGCCAGTCGCTGACCCAGCTTAACGACATGGACGTAGCTTGCAACCCGGGCCTTCTGTCTGATGAGGGTTTGGTTGTGGAGGGTCTGGCCCACAAACCTGCCATGGTCACTAATGGCATTCTACCAGTGCCACCTGGATCAGAACTCACACATCTGGTCTCCCGTGGATCAGCAGCAGCCTATGACACCTCTCGCAAGCTGGGAAAACCAGACACAGGCAGCCTCAGTGCTCCTGAATCACCACCAGACTCACTGGACTCCATTCCTAAAGTGGTGATGCCTTCAGCTTCTCATCCTAGAATCCAGAGGGAGAGTCTGGCTGGACACACACTGTCTGCTGTCTCCAGAGTTCCCCAGATACCGCAGTACCCTCCTCATCAGCCTGAGGCCTATTACCCAGAATCCAGAGTACCACCACCTGCCTCCCAATACGAGTCCTCTCAGTATCCCACTGgCAACTCATACGCTTATCAGCACTTGCAGCCTCGCTACGCTCGCCCCCCAGTTGACCCCAGCTTGGTGCCCTACCCAGACCCCTATCCTGTGTCCTACGCCCCAGAGCGCCAGTACCCTGCTCAATCTGACCCTCGCTACAGCTATCACGACAACCGCCGCCATGCGCCTTATGGAGGCCACCCTCCACTCCCACCATATGCTCGAGATGAGCTGGGCCACAGGAGTCCTGTCCCTATGGAGATGCCCCCACCACCACAGGCACCGACAGCAGGAGCCTCATCCTCATACCTCCCAGAATCACGGGACAGATATGGCCCTGAGAGCTACAACCACTCTGGCCACGGCAGGCCTTACAGCGGCAGGaGTGCATATGCCCGGCCACAGCCCAGCCTGGACTACCTGCACCGTCGGAAGAAGGAAATCATGGCCCAGTTGGAGGAGTGGAAAGTcgtctctcctcctccctttGCCTCCTCTCCAAACCTGGCCCACTCTTATGACCCCAGTTTTACGCAAGAGGTCAGGGGGCAAAACCATGGCCAACAGTATATTGGAGAGAACCCTCCAGAGTTCCAGAATGTCAGAGAACCGGAATACGCGGCTTCGTACTCGCCgtggtcatgtgacactttTGCCCCCTACATCGGCACCAAggatatgaagtccaaagactGCCCAGCCACAGGCTACATGGAGATGCAGACTATAGAAAAAAGCCTGAGAGATCCGGCTCTGGAGCTGCAGCGTCGAGCGGCGGAGGTCAAAGATGATGACCCGATCATCCCATTTGGCTCGCTGCCCACCGTCTCTCGCTTTGGAGCCATATCTCGCACGTCCAGATCGGGATATCAGCCTGCTGGACTTGTTCCAGGCCCCCCAGCCAAACACTCTGCAAGCGCAGTTGATTACAGCTATAGGAATCATGGAGGATGGAATGAAGCCTCTTACACCCAGCACCAAATCATGCCACCTCAGGGACATTTCAGTGAGCGTCTGCCCCCTGCTGCCCAGGAAAGGGAACAGCTGAAGATGGAGCTCCAGCGGGTCAACCAACAGATTACCCAACAGACTCGCTGTATGGAGAGGGAACCAGGTTCAGCAGCTGGCCAAGCTGCTCCAGTGGAGTGGTCAACGGCTAGTGTTTCCAGCGAGCAGCTGAGCCTAGAGTTGCAccaggtggagagagagatcGGCATGAGGACACGTGAGATGGCCATGGAGGCGGCTGGCATGAAGTACAAGCTGGTAGCAGGAAGTGAAAATGGACAGGGCGAGCACAATTTACAGCGGGAGGATCACCACCTAGCCCTCAGTGAGGGATCAAATGGTTCCAGTTCTGTGGTGCAGGACTGTGGTATGGGCAGCACCAGCATGTCCTCCCTGACCAGCAAGACATCCTCACTCAGCCTGTCGTCTGAACTGGTGGGCAGCAGCCCGGACCTGACCAAGAATGGGGTGGCTCACGCATGCTCATAGATGGAGTGGGAGGGGCTTCCATGTGGACCAATGAGTGAGTGTTAAACAGGAAGTCGAGCGTCAGGCACACTTGCTCAGAGAAGCTCAGGAAAGACTCCTCActgacacaccacacacacacaaacacaggtgtTAGTGTTCAGCTCATAGACATAGGATGTTGTTTCAGAATTGATGATCATGTACGAGTCCCGATGGgagtgtttttgtctttttctttttgttcacGCTGAACATGCTCACTGCTTGCAGTcacctgttttttcttttttttccattgcatCTAGCTGTTCTTGCATttatgcatattattattttatttttttaaatgtgtaaatccTAACCTTGGGAAAATGTAATTGCTTTTGATTACTCTCAGGTTAGCTTATAAAAGATTGCTTAAATTAAGGTACACAAACCAACTGCAACATGAGTAAGAatttaagggtttttttaaatatatatatattatactccATTAAGGAATGTTTAGAACTATTTCTCCAATGTGGATTTAgctgaaccttttttttttctttgttaaaaattcACTGTGTGAAATTTTGGATTGCATTTTGTATAATACAATTGCTTTTCTTCATGGAATGGGGAAGGAAGGGGAACTGACTGGAAGGCTGAATTAgataaaacatgaaattatttaaaagtgtaaCTTAATGTGCAACAATAATTCTGTACTGGCAGGGATTGTGATTAAATGATATTGTAAACAGCT
>XM_034308776.1
ATGCCCGTGCAAGCGCCGCAATGGACCGAGTTTCTGTTGTGTCCCATCTGCACACAGACGTTCGAGGAGAGTGTGCGCAAGCCCATCAGCCTGGGCTGCGGTCACACCGTCTGCAAGATGTGCCTGAACAAGCTGCACCGCAAAGCCTGCCCTTTTGACCAGACCACCATCAGCACAGACATCGAGCTTCTGCCCGTCAACACGGCGCTGCTGCAGCTCGTCTGCCCTCAGGTACCCAAGTCTCAGCCCGTCACCTTAGTGAAAGGAGTGGAGGACATCAAGCATTATGATGAAGCACGCACGTGTGTGGAGGAGCTGGCTCTCTACCTCAAACCCCTCAGCAACACCCGAGgTGTAGGGCTGGGCACTGCGAGTCAGAGTCTCCTCAGCAGACCCATGCAGAGGAAGCTGGTGACCCTGGTGCACTGCCagctggtggaggaggagggtCGTATCCGGGCCATGCGTGCCGCTCGCTCTCTGGGTGAACGCACAGTCACCGAGCTCATCCTGCAACACCAAAACCCCCAGCAGCTCTCTTCCAACCTGTGGGCCGCTGTCCGAGCTCGTGGCTGCCAGTTCCTCGGCCCTGCCATGCAGGAGGAGGCTCTGAAGTTGGTGCTGCTGGCGTTGGAGGATGGTTCGCCTCTGTCCCGCAAGGTTCTGGTTCTGTTTGTGGTCCAGAGGCTGGAGCCACGCTTCCCTCAAGCCTCTAAAACCAGTATAGGGCATGTCGTACAGCTGCTGTACAGAGCCTCATGTTTTAAGGTGACTAAGCGAGATGAGGACTCATCCCTGATGCAGCTAAAGGAAGAGTTCAGGACGTACGAGGCTCTGCGGAGAGAGCACGACTCCCAGATCGTGCAGATTGCCATGGAGGGAGGCCTGCGCATCGCCCCTGACCAGTGGTCCTCCCTACTCTATGGGGATCAGTCCCACAAGTCCCACATGCAGTCCATCATTGATAAGtTGCAGACCCCAGCCTCTTTTGCTCAGAGTGTACAGGAGCTCACCATTGCCCTGCAGAGAACAGGAGACCCAGCCAACCTCAACCGCCTCAGACCGCATTTAGAGCTGCTGGCTGACATCGACCCGAGCCCAGATGCCCCTGCCCCCACTTGGGAGCAGCTGGACAAAGGGCTGGTGGCTGTAAAGACAGTAGTGCATGGTCTTGTGGACTTCATCCAGAACCACAGCAAGAAGGCTGGAGACCCACAGCAGGCTCCTCAGCACAGCAAGTACAAGACGTACATGTGTAGAGACATGAAGCAGAAGGGAGGGTGTCCCAGAGGAGCCAGCTGCACCTTTGCCCATTCCCAGGAAGAGCTGGAAAAGTTCCGTAAGATGAACAAGCGTCTACCTTTGAGGAAGCCCCTCAGCCAGTCGCTGACCCAGCTTAACGACATGGACGTAGCTTGCAACCCGGGCCTTCTGTCTGATGAGGGTTTGGTTGTGGAGGGTCTGGCCCACAAACCTGCCATGGTCACTAATGGCATTCTACCAGTGCCACCTGGATCAGAACTCACACATCTGGTCTCCCGTGGATCAGCAGCAGCCTATGACACCTCTCGCAAGCTGGGAAAACCAGACACAGGCAGCCTCAGTGCTCCTGAATCACCACCAGACTCACTGGACTCCATTCCTAAAGTGGTGATGCCTTCAGCTTCTCATCCTAGAATCCAGAGGGAGAGTCTGGCTGGACACACACTGTCTGCTGTCTCCAGAGTTCCCCAGATACCGCAGTACCCTCCTCATCAGCCTGAGGCCTATTACCCAGAATCCAGAGTACCACCACCTGCCTCCCAATACGAGTCCTCTCAGTATCCCACTGgCAACTCATACGCTTATCAGCACTTGCAGCCTCGCTACGCTCGCCCCCCAGTTGACCCCAGCTTGGTGCCCTACCCAGACCCCTATCCTGTGTCCTACGCCCCAGAGCGCCAGTACCCTGCTCAATCTGACCCTCGCTACAGCTATCACGACAACCGCCGCCATGCGCCTTATGGAGGCCACCCTCCACTCCCACCATATGCTCGAGATGAGCTGGGCCACAGGAGTCCTGTCCCTATGGAGATGCCCCCACCACCACAGGCACCGACAGCAGGAGCCTCATCCTCATACCTCCCAGAATCACGGGACAGATATGGCCCTGAGAGCTACAACCACTCTGGCCACGGCAGGCCTTACAGCGGCAGGaGTGCATATGCCCGGCCACAGCCCAGCCTGGACTACCTGCACCGTCGGAAGAAGGAAATCATGGCCCAGTTGGAGGAGTGGAAAGTcgtctctcctcctccctttGCCTCCTCTCCAAACCTGGCCCACTCTTATGACCCCAGTTTTACGCAAGAGGTCAGGGGGCAAAACCATGGCCAACAGTATATTGGAGAGAACCCTCCAGAGTTCCAGAATGTCAGAGAACCGGAATACGCGGCTTCGTACTCGCCgtggtcatgtgacactttTGCCCCCTACATCGGCACCAAggatatgaagtccaaagactGCCCAGCCACAGGCTACATGGAGATGACTATAGAAAAAAGCCTGAGAGATCCGGCTCTGGAGCTGCAGCGTCGAGCGGCGGAGGTCAAAGATGATGACCCGATCATCCCATTTGGCTCGCTGCCCACCGTCTCTCGCTTTGGAGCCATATCTCGCACGTCCAGATCGGGATATCAGCCTGCTGGACTTGTTCCAGGCCCCCCAGCCAAACACTCTGCAAGCGCAGTTGATTACAGCTATAGGAATCATGGAGGATGGAATGAAGCCTCTTACACCCAGCACCAAATCATGCCACCTCAGGGACATTTCAGTGAGCGTCTGCCCCCTGCTGCCCAGGAAAGGGAACAGCTGAAGATGGAGCTCCAGCGGGTCAACCAACAGATTACCCAACAGACTCGCTGTATGGAGAGGGAACCAGGTTCAGCAGCTGGCCAAGCTGCTCCAGTGGAGTGGTCAACGGCTAGTGTTTCCAGCGAGCAGCTGAGCCTAGAGTTGCAccaggtggagagagagatcGGCATGAGGACACGTGAGATGGCCATGGAGGCGGCTGGCATGAAGTACAAGCTGGTAGCAGGAAGTGAAAATGGACAGGGCGAGCACAATTTACAGCGGGAGGATCACCACCTAGCCCTCAGTGAGGGATCAAATGGTTCCAGTTCTGTGGTGCAGGACTGTGGTATGGGCAGCACCAGCATGTCCTCCCTGACCAGCAAGACATCCTCACTCAGCCTGTCGTCTGAACTGGTGGGCAGCAGCCCGGACCTGACCAAGAATGGGGTGGCTCACGCATGCTCATAGATGGAGTGGGAGGGGCTTCCATGTGGACCAATGAGTGAGTGTTAAACAGGAAGTCGAGCGTCAGGCACACTTGCTCAGAGAAGCTCAGGAAAGACTCCTCActgacacaccacacacacacaaacacaggtgtTAGTGTTCAGCTCATAGACATAGGATGTTGTTTCAGAATTGATGATCATGTACGAGTCCCGATGGgagtgtttttgtctttttctttttgttcacGCTGAACATGCTCACTGCTTGCAGTcacctgttttttcttttttttccattgcatCTAGCTGTTCTTGCATttatgcatattattattttatttttttaaatgtgtaaatccTAACCTTGGGAAAATGTAATTGCTTTTGATTACTCTCAGGTTAGCTTATAAAAGATTGCTTAAATTAAGGTACACAAACCAACTGCAACATGAGTAAGAatttaagggtttttttaaatatatatatattatactccATTAAGGAATGTTTAGAACTATTTCTCCAATGTGGATTTAgctgaaccttttttttttctttgttaaaaattcACTGTGTGAAATTTTGGATTGCATTTTGTATAATACAATTGCTTTTCTTCATGGAATGGGGAAGGAAGGGGAACTGACTGGAAGGCTGAATTAgataaaacatgaaattatttaaaagtgtaaCTTAATGTGCAACAATAATTCTGTACTGGCAGGGATTGTGATTAAATGATATTGTAAACAGCT
>XM_034308777.1
ATGCCCGTGCAAGCGCCGCAATGGACCGAGTTTCTGTTGTGTCCCATCTGCACACAGACGTTCGAGGAGAGTGTGCGCAAGCCCATCAGCCTGGGCTGCGGTCACACCGTCTGCAAGATGTGCCTGAACAAGCTGCACCGCAAAGCCTGCCCTTTTGACCAGACCACCATCAGCACAGACATCGAGCTTCTGCCCGTCAACACGGCGCTGCTGCAGCTCGTCTGCCCTCAGGTACCCAAGTCTCAGCCCGTCACCTTAGTGAAAGGAGTGGAGGACATCAAGCATTATGATGAAGCACGCACGTGTGTGGAGGAGCTGGCTCTCTACCTCAAACCCCTCAGCAACACCCGAGgTGTAGGGCTGGGCACTGCGAGTCAGAGTCTCCTCAGCAGACCCATGCAGAGGAAGCTGGTGACCCTGGTGCACTGCCagctggtggaggaggagggtCGTATCCGGGCCATGCGTGCCGCTCGCTCTCTGGGTGAACGCACAGTCACCGAGCTCATCCTGCAACACCAAAACCCCCAGCAGCTCTCTTCCAACCTGTGGGCCGCTGTCCGAGCTCGTGGCTGCCAGTTCCTCGGCCCTGCCATGCAGGAGGAGGCTCTGAAGTTGGTGCTGCTGGCGTTGGAGGATGGTTCGCCTCTGTCCCGCAAGGTTCTGGTTCTGTTTGTGGTCCAGAGGCTGGAGCCACGCTTCCCTCAAGCCTCTAAAACCAGTATAGGGCATGTCGTACAGCTGCTGTACAGAGCCTCATGTTTTAAGGTGACTAAGCGAGATGAGGACTCATCCCTGATGCAGCTAAAGGAAGAGTTCAGGACGTACGAGGCTCTGCGGAGAGAGCACGACTCCCAGATCGTGCAGATTGCCATGGAGGGAGGCCTGCGCATCGCCCCTGACCAGTGGTCCTCCCTACTCTATGGGGATCAGTCCCACAAGTCCCACATGCAGTCCATCATTGATAAGtTGCAGACCCCAGCCTCTTTTGCTCAGAGTGTACAGGAGCTCACCATTGCCCTGCAGAGAACAGGAGACCCAGCCAACCTCAACCGCCTCAGACCGCATTTAGAGCTGCTGGCTGACATCGACCCGAGCCCAGATGCCCCTGCCCCCACTTGGGAGCAGCTGGACAAAGGGCTGGTGGCTGTAAAGACAGTAGTGCATGGTCTTGTGGACTTCATCCAGAACCACAGCAAGAAGGCTGGAGACCCACAGCAGGCTCCTCAGCACAGCAAGTACAAGACGTACATGTGTAGAGACATGAAGCAGAAGGGAGGGTGTCCCAGAGGAGCCAGCTGCACCTTTGCCCATTCCCAGGAAGAGCTGGAAAAGTTCCGTAAGATGAACAAGCGTCTACCTTTGAGGAAGCCCCTCAGCCAGTCGCTGACCCAGCTTAACGACATGGACGTAGCTTGCAACCCGGGCCTTCTGTCTGATGAGGGTTTGGTTGTGGAGGGTCTGGCCCACAAACCTGCCATGGTCACTAATGGCATTCTACCAGTGCCACCTGGATCAGAACTCACACATCTGGTCTCCCGTGGATCAGCAGCAGCCTATGACACCTCTCGCAAGCTGGGAAAACCAGACACAGGCAGCCTCAGTGCTCCTGAATCACCACCAGACTCACTGGACTCCATTCCTAAAGTGGTGATGCCTTCAGCTTCTCATCCTAGAATCCAGAGGGAGAGTCTGGCTGGACACACACTGTCTGCTGTCTCCAGAGTTCCCCAGATACCGCAGTACCCTCCTCATCAGCCTGAGGCCTATTACCCAGAATCCAGAGTACCACCACCTGCCTCCCAATACGAGTCCTCTCAGTATCCCACTGgCAACTCATACGCTTATCAGCACTTGCAGCCTCGCTACGCTCGCCCCCCAGTTGACCCCAGCTTGGTGCCCTACCCAGACCCCTATCCTGTGTCCTACGCCCCAGAGCGCCAGTACCCTGCTCAATCTGACCCTCGCTACAGCTATCACGACAACCGCCGCCATGCGCCTTATGGAGGCCACCCTCCACTCCCACCATATGCTCGAGATGAGCTGGGCCACAGGAGTCCTGTCCCTATGGAGATGCCCCCACCACCACAGGCACCGACAGCAGGAGCCTCATCCTCATACCTCCCAGAATCACGGGACAGATATGGCCCTGAGAGCTACAACCACTCTGGCCACGGCAGGCCTTACAGCGGCAGGaGTGCATATGCCCGGCCACAGCCCAGCCTGGACTACCTGCACCGTCGGAAGAAGGAAATCATGGCCCAGTTGGAGGAGTGGAAAGTcgtctctcctcctccctttGCCTCCTCTCCAAACCTGGCCCACTCTTATGACCCCAGTTTTACGCAAGAGGGCCAACAGTATATTGGAGAGAACCCTCCAGAGTTCCAGAATGTCAGAGAACCGGAATACGCGGCTTCGTACTCGCCgtggtcatgtgacactttTGCCCCCTACATCGGCACCAAggatatgaagtccaaagactGCCCAGCCACAGGCTACATGGAGATGCAGACTATAGAAAAAAGCCTGAGAGATCCGGCTCTGGAGCTGCAGCGTCGAGCGGCGGAGGTCAAAGATGATGACCCGATCATCCCATTTGGCTCGCTGCCCACCGTCTCTCGCTTTGGAGCCATATCTCGCACGTCCAGATCGGGATATCAGCCTGCTGGACTTGTTCCAGGCCCCCCAGCCAAACACTCTGCAAGCGCAGTTGATTACAGCTATAGGAATCATGGAGGATGGAATGAAGCCTCTTACACCCAGCACCAAATCATGCCACCTCAGGGACATTTCAGTGAGCGTCTGCCCCCTGCTGCCCAGGAAAGGGAACAGCTGAAGATGGAGCTCCAGCGGGTCAACCAACAGATTACCCAACAGACTCGCTGTATGGAGAGGGAACCAGGTTCAGCAGCTGGCCAAGCTGCTCCAGTGGAGTGGTCAACGGCTAGTGTTTCCAGCGAGCAGCTGAGCCTAGAGTTGCAccaggtggagagagagatcGGCATGAGGACACGTGAGATGGCCATGGAGGCGGCTGGCATGAAGTACAAGCTGGTAGCAGGAAGTGAAAATGGACAGGGCGAGCACAATTTACAGCGGGAGGATCACCACCTAGCCCTCAGTGAGGGATCAAATGGTTCCAGTTCTGTGGTGCAGGACTGTGGTATGGGCAGCACCAGCATGTCCTCCCTGACCAGCAAGACATCCTCACTCAGCCTGTCGTCTGAACTGGTGGGCAGCAGCCCGGACCTGACCAAGAATGGGGTGGCTCACGCATGCTCATAGATGGAGTGGGAGGGGCTTCCATGTGGACCAATGAGTGAGTGTTAAACAGGAAGTCGAGCGTCAGGCACACTTGCTCAGAGAAGCTCAGGAAAGACTCCTCActgacacaccacacacacacaaacacaggtgtTAGTGTTCAGCTCATAGACATAGGATGTTGTTTCAGAATTGATGATCATGTACGAGTCCCGATGGgagtgtttttgtctttttctttttgttcacGCTGAACATGCTCACTGCTTGCAGTcacctgttttttcttttttttccattgcatCTAGCTGTTCTTGCATttatgcatattattattttatttttttaaatgtgtaaatccTAACCTTGGGAAAATGTAATTGCTTTTGATTACTCTCAGGTTAGCTTATAAAAGATTGCTTAAATTAAGGTACACAAACCAACTGCAACATGAGTAAGAatttaagggtttttttaaatatatatatattatactccATTAAGGAATGTTTAGAACTATTTCTCCAATGTGGATTTAgctgaaccttttttttttctttgttaaaaattcACTGTGTGAAATTTTGGATTGCATTTTGTATAATACAATTGCTTTTCTTCATGGAATGGGGAAGGAAGGGGAACTGACTGGAAGGCTGAATTAgataaaacatgaaattatttaaaagtgtaaCTTAATGTGCAACAATAATTCTGTACTGGCAGGGATTGTGATTAAATGATATTGTAAACAGCT

Function

symbol description
rc3h1 Enables CCR4-NOT complex binding activity; RNA binding activity; and ubiquitin-protein transferase activity. Involved in nuclear-transcribed mRNA catabolic process; protein polyubiquitination; and regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay. Located in P-body.

NR:

description
roquin-1-like isoform X1

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K15690 RC3H; RING finger and CCCH-type zinc finger domain-containing protein

RNA

RNA id representative length rna type GC content exon number start site end site
TU213696 False 3549 lncRNA 0.36 2 12752106 12755722
XM_026930262.2 True 4397 mRNA 0.52 21 12752078 12782535
XM_034308776.1 False 4042 mRNA 0.53 20 12752078 12776243
XM_034308777.1 False 4027 mRNA 0.53 20 12752078 12776243

Neighbor

gene id symbol gene type direction distance location
serpinc1 serpinc1 coding downstream 7320 12736065 ~ 12744758 (-)
dph5 dph5,LOC106613590,LOC107715097 coding downstream 75179 12666723 ~ 12676899 (-)
dbt dbt,LOC107588055,LOC107653638 coding downstream 256410 12488208 ~ 12495668 (-)
lrrc39 lrrc39,LOC107592708,LOC107715106,LOC107653639 coding downstream 268027 12479396 ~ 12484051 (-)
osbpl1a LOC108271178,LOC108429508 coding downstream 278630 12436097 ~ 12473448 (-)
stil stil coding upstream 784 12783319 ~ 12802687 (-)
klf2a LOC108271322 coding upstream 64316 12846851 ~ 12849646 (-)
fam32a fam32a coding upstream 160891 12943426 ~ 12946820 (-)
LOC113536692 NA coding upstream 241866 13024401 ~ 13032544 (-)
lpl lpl,LOC108271131,LOC107588078,LOC107665505,LOC107561902,LOC107715086 coding upstream 255455 13037990 ~ 13046848 (-)
G180541 NA non-coding downstream 4534 12747334 ~ 12747544 (-)
G180434 vcam1 non-coding downstream 126507 12623102 ~ 12625571 (-)
G180429 vcam1 non-coding downstream 132427 12575961 ~ 12619651 (-)
G180428 vcam1 non-coding downstream 133545 12602176 ~ 12618533 (-)
G180430 NA non-coding downstream 167308 12579501 ~ 12584770 (-)
G180574 NA non-coding upstream 99120 12881655 ~ 12881911 (-)
G180626 NA non-coding upstream 194052 12976587 ~ 12980695 (-)
G180629 safb2 non-coding upstream 199477 12982012 ~ 12984113 (-)
G180627 NA non-coding upstream 204252 12986787 ~ 12987523 (-)
G180628 NA non-coding upstream 207238 12989773 ~ 13048700 (-)
G180485 s1pr1,LOC107715096,LOC107592715 other downstream 31602 12717361 ~ 12720476 (-)
ncln ncln other downstream 720072 12020412 ~ 12032006 (-)
fxr1 fxr1 other downstream 862929 11862989 ~ 11889149 (-)
LOC117598402 NA other downstream 1220045 11527957 ~ 11532033 (-)
LOC113536577 NA other downstream 1233684 11510846 ~ 11518394 (-)
rpp21 LOC108271386 other upstream 457188 13239723 ~ 13243200 (-)
ptprsa ptprs,ptprd,LOC107559826,LOC107679075 other upstream 764379 13546914 ~ 13783127 (-)
LOC113527598 LOC108271251,LOC108441295,LOC107742801 other upstream 1575985 14358520 ~ 14361647 (-)
rx1 LOC108270609 other upstream 1626191 14408726 ~ 14415069 (-)
zfr2 zfr2,LOC108271074,LOC107742797,LOC108430234 other upstream 1654825 14437360 ~ 14460337 (-)

Expression


Co-expression Network