klf2a (LOC108271322)


Basic Information

Item Value
gene id klf2a
gene name LOC108271322
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 12846851 ~ 12849646 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026930825.2
TAGAGacacataaagagagagagagagagcacgagctggagtttttacacacatacacacacacacacactctgagtgCTGGTGCACGGGTCACGGCTGCTCATTCTTGAAGCTCGAGCAGCCTTGAGAACGAAATCTTTTCTTTAAttcgtttctttctttctttctttcttttttttttcctgaattgaCTGGAGATGGCCTTAAGTGGGACCATTTTGCCATCCATTTCAACTTTTTCCGCGCAGAAGGAAAAATGCTGGGAAAACAGATGGAAGGATGACTTGGACAGGTCCATGCTGTCCAGCTGCTTGGCAGATCTGTCTCAGAACATGGACGCCTTTGGTAGAGGCGATGACGAGGACCTTGACAAGTACCTGGACCTGGAGTTTATTCTGGCCAACACAGCAGGGTCAGAGAGCCTCTCGGTGCAAGGCATGAGTGTGGCAAACGACTACAGGATGCAGGAGTGCAGAAATGTGTACACATCAGCTCCTTCTACAGTGTACCCCGTGCCGGAGCTGAACACCTCTCCACCTCCTTACGGCGTCAGCCTGATGGCCGAGCTCCTGCATCCAGAAGTGGATACATACGGCCCACCTCCTCCTCATCCCAACAGCAACACCATTGTCCAGGGAAGATTCCTGGTCCGGTCGGAGTTCTCCAGTCAGGACGTCGCAGAGCACATCAAAGTGGAGCCACGTATGGATGGTTACGGACCTGTAGTGGGCATGGTGCCTAAAATTAAACGAGAGAGCGACAATTCTTGCATGAGGGCTTATGAACAGCCTCTGCTTGCTCATTCACCTCAGGGTTCAGGGAGCATGACTCCGCCTCTGAGCCCAGCTGAGATCAACGCACTTAACACGGACGCTCAGAGCCAGCTGTGTCACTCGGTGGCGTATTCGCAGAGCTACGCATGCCACGCCCCCCCACACATACAGCTCCCGTATCAGAGCGCGGCGCCTCGCTTCGACACCATGGCAGTGCCAAACAGCGGGCAGAGGGTTCTCCTTACGCCACCTTCTTCCCCATTAGAGCTGGATGCCAAACCAAAGAGGGGGAGACGCACGTGGCCAAGGAAGAGGACGGCAACTCATACCTGCACTTACTCCGGATGTGGCAAAACTTACACCAAGAGCTCACACCTGAAGGCGCACCAAAGGACACACACAGgtgagaagccgtatcactgcagTTGGGAAGGTTGCGGTTGGAAGTTCGCCCGCTCTGACGAGTTGACTCGCCATTTCCGGAAGCACACCGGCCACAGACCCTTCCAGTGTCACCTCTGCGAGCGCGCCTTCTCCAGGTCCGACCATCTCGCGCTGCACATGAAGCGCCACATGTAgaaacccaactgagcatggaCTAAAGCGCCGTGCTATCCTGTGACAAGATGTTCTTCTCTTATTCCATCTGTTCTGTTTGTGTTACTTTAGACAGCAGAGGTTCTCAATCCAAGTTTCTTGAGAaactctaatctaatctataGACTGGACATTGTGCTGAATGCTATGcaaccatttttttctcatgatgTAGCTggtactactttttttttttataagatatttttcaaagaatttaaaaaaaacacagaaccaCTTGTAAGAACAAGTAGGCTGGACCTGCACAGCTCTGACGCAACTGGAATCAGTAGAAACATGATACCAACATGATGTGCCTCCCACGTCACGATTGtgccttttattattattatttttttaaataaattacatctaTACATCTCATGTGCCATAAAATTTccttatgtaaaaaaaatgaaataagctttcagacaatgtttttattttttaaaactgccaCTCAAGCCATGTGAAAACTGAATgttttgtacagtatatttgtatattaacCTTTAAATCAgggtctttttttaattttttattttaatggtttctaagtattttaaaatgtattacaaaCTGTCCCCATGTTCAACATGACATGAAAAGGGCTAcaatttttaactgttttgGGACAAAGTCTTTTGACTTGTACataatttatattatgtaaatagtgtatttactgtacatattaAACTTAACTGAGATTCTA

Function

NR:

description
Krueppel-like factor 2

GO:

id name namespace
GO:0061444 endocardial cushion cell development biological_process
GO:0003171 atrioventricular valve development biological_process
GO:0006809 nitric oxide biosynthetic process biological_process
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K17845 KLF2; krueppel-like factor 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026930825.2 True 2085 mRNA 0.46 3 12846851 12849646

Neighbor

gene id symbol gene type direction distance location
stil stil coding downstream 44164 12783319 ~ 12802687 (-)
serpinc1 serpinc1 coding downstream 102093 12736065 ~ 12744758 (-)
dph5 dph5,LOC106613590,LOC107715097 coding downstream 169952 12666723 ~ 12676899 (-)
dbt dbt,LOC107588055,LOC107653638 coding downstream 351183 12488208 ~ 12495668 (-)
lrrc39 lrrc39,LOC107592708,LOC107715106,LOC107653639 coding downstream 362800 12479396 ~ 12484051 (-)
fam32a fam32a coding upstream 93780 12943426 ~ 12946820 (-)
LOC113536692 NA coding upstream 174755 13024401 ~ 13032544 (-)
lpl lpl,LOC108271131,LOC107588078,LOC107665505,LOC107561902,LOC107715086 coding upstream 188344 13037990 ~ 13046848 (-)
gpc1a gpc1,LOC108424978 coding upstream 262166 13111812 ~ 13156018 (-)
gpc5b LOC108270519 coding upstream 308741 13158387 ~ 13231123 (-)
G180541 NA non-coding downstream 99307 12747334 ~ 12747544 (-)
G180434 vcam1 non-coding downstream 221280 12623102 ~ 12625571 (-)
G180429 vcam1 non-coding downstream 227200 12575961 ~ 12619651 (-)
G180574 NA non-coding upstream 32009 12881655 ~ 12881911 (-)
G180626 NA non-coding upstream 126941 12976587 ~ 12980695 (-)
G180629 safb2 non-coding upstream 132366 12982012 ~ 12984113 (-)
G180627 NA non-coding upstream 137141 12986787 ~ 12987523 (-)
G180628 NA non-coding upstream 140127 12989773 ~ 13048700 (-)
rc3h1a rc3h1,LOC108429496 other downstream 64316 12752078 ~ 12782535 (-)
G180485 s1pr1,LOC107715096,LOC107592715 other downstream 126375 12717361 ~ 12720476 (-)
ncln ncln other downstream 814845 12020412 ~ 12032006 (-)
fxr1 fxr1 other downstream 957702 11862989 ~ 11889149 (-)
LOC117598402 NA other downstream 1314818 11527957 ~ 11532033 (-)
rpp21 LOC108271386 other upstream 390077 13239723 ~ 13243200 (-)
ptprsa ptprs,ptprd,LOC107559826,LOC107679075 other upstream 697268 13546914 ~ 13783127 (-)
LOC113527598 LOC108271251,LOC108441295,LOC107742801 other upstream 1508874 14358520 ~ 14361647 (-)
rx1 LOC108270609 other upstream 1559080 14408726 ~ 14415069 (-)
zfr2 zfr2,LOC108271074,LOC107742797,LOC108430234 other upstream 1587714 14437360 ~ 14460337 (-)

Expression


Co-expression Network