dbt (dbt,LOC107588055,LOC107653638)


Basic Information

Item Value
gene id dbt
gene name dbt,LOC107588055,LOC107653638
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 12488208 ~ 12495668 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026930292.2
gtcagtaaaCTGGGGCGTGTGATTACGTCACATCCGCAGACGTACTGTTCCCGTGTATGAGAAAAATGGCGGCACTCATTACAGTGAGGGGCTCATTCGGGTTTATGAGACGCTTGGTCTCTGTCCAGCATCTGCACAAGTGTTGTTACTCCAAACTACACACACCTTCTGtaccacacacaccccacataTACTCCAGCAGCGCTTTGCATCAGCACAGATTTTTCCACACCAGCTATGCTGCAGCAGGACCAATTTTACAGTTCAAGCTATCAGATATTGGGGAAGGAATTATGGAGGTGACTGTAAAAGAATGGTATGTGAAGGAAGGTGATCGAGTGTCCCAGTTCGACAGCATCTGTGAAGTGCAGAGCGATAAAGCATCAGTTACAATCACCAGCCGCTACGAAGGAGTCATCCGCAAACTCCACTACGATGTTGATTCTATTGCACTCGTGGGCAAGCCTCTAGTTGATATTGAAACTGACGGAGGACACGCTGTAGCTCCGGAGGAGGATGTGATGGAAACACCAGCTGTGTCACGGGAAGAACACACTCATCAGGAAATTAAAGGGCACAagacacaggccacacctgcaGTGCGACGCATAGCCATGGAAAACAACATCAAGCTCAGTGAAGTTGTCGGGACCGGAAAGGACGGCCGCATTCTTAAAGAAGACATCCTGAACTTCATAGCCAAGCAGACAGGAGCCATCCTACCCCCTACCCCCTTCCAGGAGATCCAGCCTCCTCCTCCCACACCTCCTCCAGCTGTCACGCCCAAAGAGAAGAAGCCTCTGAGCGTCACTACTCCTGTCATCCCTAGGCCAGTGTTTACAGGCAAAGACCGCACCGAGCCTCTTAAAGGTTTTCACAAGGCCATGGTGAAGACAATGACGGCGGCTCTGAAGATCCCACACTTCGGCTACAAGGATGAAGTGGACCTGAGCCGGCTGGTGCATCTGCGCTCCGACCTGAAGGACGTGGCTGAGCTTCGGGGAGTGAAGCTCAGCTACATGCCGTTCTTTATCAAGgCAGCATCACTTGCTCTCCACCATTTCCCGATCTTGAATGCCTCTGTGGATGAAGCATGCCAGAATATCACCTACaagGCTGCACACAACATTGGTCTGGCCATGGATACGCCCCAGGGTCTGCTGGTGCCCAACATAAAGAATGTACAGATGCTCAGTATTTTTGAAATCGCCACGGAGCTCAATCGACTGCAGGGTTTGGGTGTATCTGGGCAGCTTGGCACGACGGACCTTACTGGGGGAACATTCACACTCTCCAACATCGGCTCAATTGGAGGTACTTATGCAAAGCCAGTGATTCTGCCACCTGAAGTTGCGATCGGTGCTCTCGGGAAGATCCAGGTTTTACCCCGCTTCAATGCCAAGGACGAGGTTGTGAAAGCGCACATCATGTACGTGAGCTGGTCTGCAGATCACAGAATCATTGACGGGGCCACAATGTGTCGCTTCTCCAACCTGTGGAGATCTTATCTGGAGAACCCGGCCTCCATGGTGCTGGATCTGAAGTAGATCATCCTGCCTTTAGCACACATCCAGGCACTTACTAGCATTTGAACATTGTTACTGACGTTACTGATTTAAACTACTCCAGAATTTGACTtcccctttcttttccttttccctttCCGTGATCTCTGTCTTCTCTCATGACATGGACAGTTGCACATGTTAAGTGAAAAATGTTAACACATTTTCAGACATGTGACTTGAATGTACAGCTGCTAGTCTTGTGTGGGTCAGTTGCATTgttctataaatacacacaaccaAGACAACCTACTTGTCATGAACACTATTAACACTTTCTTGAACTTGGAAAGGTAGATATTTTTTACCTCCCTACAAAGGCATTATTGCACAAATAACTTTTgagagtgtacacacacatccaggCTATGATTATGGAACGTTTGGTGGTGAAGAAAATCATGTAATCTCTACTGTGTTTAAAGTATTTAAGGAAAAATCTCAATTATGAATGGTGTCTGTAGTATTAGAACAGGTATAGTCTTTGGATGTTACATAGGAACGCACAGTTACATAGGAACGCACAGTTTATccattattttgttgttttgtgtggaTTTAGAGGGGGGaacagttttaataaatgatgtcaTTATGAAATGGCACTGGCAATCA

Function

symbol description
dbt Predicted to enable acetyltransferase activity and lipoic acid binding activity. Acts upstream of or within branched-chain amino acid metabolic process. Predicted to be active in mitochondrion. Is expressed in brain; gut; intestine; liver; and muscle. Used to study maple syrup urine disease. Human ortholog(s) of this gene implicated in maple syrup urine disease. Orthologous to human DBT (dihydrolipoamide branched chain transacylase E2).

NR:

description
PREDICTED: lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial-like

GO:

id name namespace
GO:0009081 branched-chain amino acid metabolic process biological_process
GO:0046949 fatty-acyl-CoA biosynthetic process biological_process
GO:0048037 obsolete cofactor binding molecular_function
GO:0043754 dihydrolipoyllysine-residue (2-methylpropanoyl)transferase activity molecular_function

KEGG:

id description
K09699 DBT, bkdB; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026930292.2 True 2180 mRNA 0.47 11 12488208 12495668

Neighbor

gene id symbol gene type direction distance location
lrrc39 lrrc39,LOC107592708,LOC107715106,LOC107653639 coding downstream 4157 12479396 ~ 12484051 (-)
osbpl1a LOC108271178,LOC108429508 coding downstream 14760 12436097 ~ 12473448 (-)
cart1 LOC108270656 coding downstream 54039 12431859 ~ 12434169 (-)
map1sa map1s coding downstream 60761 12398946 ~ 12427447 (-)
ifi44g NA coding downstream 92311 12388456 ~ 12395897 (-)
dph5 dph5,LOC106613590,LOC107715097 coding upstream 171055 12666723 ~ 12676899 (-)
serpinc1 serpinc1 coding upstream 240397 12736065 ~ 12744758 (-)
stil stil coding upstream 287651 12783319 ~ 12802687 (-)
klf2a LOC108271322 coding upstream 351183 12846851 ~ 12849646 (-)
fam32a fam32a coding upstream 447758 12943426 ~ 12946820 (-)
G180387 LOC108271398 non-coding downstream 791 12486675 ~ 12487417 (-)
G180361 sass6,LOC107756018,LOC107695611,LOC107731314 non-coding downstream 122107 12364099 ~ 12366101 (-)
G180273 NA non-coding downstream 187343 12174862 ~ 12300865 (-)
LOC117598410 NA non-coding downstream 239095 12239119 ~ 12249113 (-)
G180277 NA non-coding downstream 403891 12075238 ~ 12084317 (-)
G180392 NA non-coding upstream 12273 12507941 ~ 12508232 (-)
G180429 vcam1 non-coding upstream 80293 12575961 ~ 12619651 (-)
G180430 NA non-coding upstream 83833 12579501 ~ 12584770 (-)
G180428 vcam1 non-coding upstream 106508 12602176 ~ 12618533 (-)
G180434 vcam1 non-coding upstream 127434 12623102 ~ 12625571 (-)
ncln ncln other downstream 456202 12020412 ~ 12032006 (-)
fxr1 fxr1 other downstream 599059 11862989 ~ 11889149 (-)
LOC117598402 NA other downstream 956175 11527957 ~ 11532033 (-)
LOC113536577 NA other downstream 969814 11510846 ~ 11518394 (-)
LOC117598430 NA other downstream 984246 11491707 ~ 11503962 (-)
G180485 s1pr1,LOC107715096,LOC107592715 other upstream 221693 12717361 ~ 12720476 (-)
rc3h1a rc3h1,LOC108429496 other upstream 256410 12752078 ~ 12782535 (-)
rpp21 LOC108271386 other upstream 744055 13239723 ~ 13243200 (-)
ptprsa ptprs,ptprd,LOC107559826,LOC107679075 other upstream 1051246 13546914 ~ 13783127 (-)
LOC113527598 LOC108271251,LOC108441295,LOC107742801 other upstream 1862852 14358520 ~ 14361647 (-)

Expression


Co-expression Network