LOC117598410


Basic Information

Item Value
gene id LOC117598410
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 12239119 ~ 12249113 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004579081.1
GATGTCCGAACTGTGTCTCCGCGAGGTGGACATAGACCTGACCAGGATGGGGAGACTGGCGCTGTCCAAGTCGTCCATGCACAGCTCGTCCAAACACTCTGCCGATTCCATCGTCTCTCCCTGATCAGACAGCAGATGTGTTGCTGAGGAAGCTGTCAGGTGAAGGTGAGGAGGAAGCTCTCATCCCTGAGACCGGAGCGCTTGGCCGTGTGCATGGTTTACCCTCTGAAGCTTTAAAAAAGGATCAACATCCCTTTACTGGACCATCGTTTCATCCAGAACTTGGAGAAGGACGGCCAGGAGTGGTTGAGGAGAGAATCAGCCATCGAGAACACATTCAAGCAGTAGAGCAAGAAAAACACATAGAACCCTGACATGCAGCAGAGACGAGAAACAACTGGAGTTTAATGAACATCTGATCCAAAGATCCAAAGCTGAGGAGGACAGAATGAag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004579081.1 True 454 lncRNA 0.51 3 12239119 12249113

Neighbor

gene id symbol gene type direction distance location
s1pr4 LOC108270882 coding downstream 173320 12062995 ~ 12065799 (-)
LOC113536502 NA coding downstream 258459 11973681 ~ 11980660 (-)
mccc1 mccc1,LOC106613934 coding downstream 265903 11958278 ~ 11973216 (-)
sox2 sox2 coding downstream 493284 11742948 ~ 11745835 (-)
LOC117598431 NA coding downstream 717499 11520119 ~ 11521620 (-)
enc3 enc3,LOC108270871,LOC108430247,LOC107593050,LOC107731329,LOC107755983,LOC107695631,LOC105900972 coding upstream 62493 12311606 ~ 12324367 (-)
tmprss9 tmprss9 coding upstream 85089 12334202 ~ 12353009 (-)
lsm7 lsm7,LOC107593053 coding upstream 104032 12353145 ~ 12355924 (-)
mfsd14a1 mfsd14a,LOC106613595,LOC107704433 coding upstream 124122 12373235 ~ 12387875 (-)
ifi44g NA coding upstream 139343 12388456 ~ 12395897 (-)
G180277 NA non-coding downstream 154802 12075238 ~ 12084317 (-)
G180278 NA non-coding downstream 164588 12073269 ~ 12074531 (-)
G180127 NA non-coding downstream 184258 12053281 ~ 12054861 (-)
G180111 NA non-coding downstream 242736 11996170 ~ 11996383 (-)
G179972 NA non-coding downstream 461374 11728277 ~ 11777745 (-)
G180361 sass6,LOC107756018,LOC107695611,LOC107731314 non-coding upstream 114986 12364099 ~ 12366101 (-)
G180387 LOC108271398 non-coding upstream 237562 12486675 ~ 12487417 (-)
G180392 NA non-coding upstream 258828 12507941 ~ 12508232 (-)
G180429 vcam1 non-coding upstream 326848 12575961 ~ 12619651 (-)
G180430 NA non-coding upstream 330388 12579501 ~ 12584770 (-)
ncln ncln other downstream 207113 12020412 ~ 12032006 (-)
fxr1 fxr1 other downstream 349970 11862989 ~ 11889149 (-)
LOC117598402 NA other downstream 707086 11527957 ~ 11532033 (-)
LOC113536577 NA other downstream 720725 11510846 ~ 11518394 (-)
LOC117598430 NA other downstream 735157 11491707 ~ 11503962 (-)
G180485 s1pr1,LOC107715096,LOC107592715 other upstream 468248 12717361 ~ 12720476 (-)
rc3h1a rc3h1,LOC108429496 other upstream 502965 12752078 ~ 12782535 (-)
rpp21 LOC108271386 other upstream 990610 13239723 ~ 13243200 (-)
ptprsa ptprs,ptprd,LOC107559826,LOC107679075 other upstream 1297801 13546914 ~ 13783127 (-)
LOC113527598 LOC108271251,LOC108441295,LOC107742801 other upstream 2109407 14358520 ~ 14361647 (-)

Expression


Co-expression Network