LOC113536502


Basic Information

Item Value
gene id LOC113536502
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 11973681 ~ 11980660 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026930475.2
CTATAAGAGTACAAAGACTTTTACGCAGAATTCATACACACCTATTTGAAGCAGAGCAGTTTCATTTCTCAAGATGACTAATGCACAACGCATTGCTCTGCACTTTGTCATCCTCGCTGCTCTGCTGTTTGTGGGAAGGAGTGTATCATCTGAAGTCGATGATTCTTTGCACTCTGAGGTCTTTCTAAACCAACTGGAGGATGGAGAGGCTCAGCACAACATATCCAAGAAACCGAGCCTCCAGCCCAAAGAGAGCACTCCTGCGATAGAAACATACACGCTAGCGGAAGGcagccgagtgtgtgtgagggccaGGCTCGGCGTGGAGTTCGTGGTAAAAGAGAACAAGAAAACATTGTATTTCAACTTGGACCCCAAATCCACCAAGGCGACGGGATACTGCTCTGAccagaaaattattttttcactcGAATTTGATGGAGGAAATCTGGAATTTACATTCATCAAGACTGGTGATAAGTCATATGTGGGCAAGCTGAGAGCGCTGCTGCAGCCTGAGCCTGCCTGTAAACAATGCAAAAGTAAAAGCTACCCCGGCATTTTGGACCATGAAAAGCTCTTTGAGAGCAGTAAGGGCCAGAGCTTCAAGTGCCAGTCGAAGACTCAACTAAATCTGGCTGAAAACCTGATAATTAAACTAGTCCCTCTGCAGATTCAAGCTTTTGACCCACCCAGGGGCACTTTTGGAAAAGAGTTGGAGTGCTTGGCTGACTACACCAAGAGGATCCTACCCATCGTGGTGGGCGCTGTAGTAGCAGGAATCATCCTCATTGCTGTTCTGGTGTATGTGCTCATGCGTGAACGCCGTGGTCGAGGCTACGAACAACTCTGAGTGTGATTGACATCAAAGCCTCAAGAAACAACACTGTTTTACACCCTAAGCTACCGGAAACCAGCCTGTTATATACTAGGCACTAAATACTCCATGAGGACACCTTCACAATGTGTTTACCTACCATCATATGCTAaaaaatttgataaaaaaaactttacattcCACCATTCAGAAAGCTAAATTTGACTGTTGACTGTTGGCTATATGTGAATGAcaaatgtgtattaatgtgatTAATGTAGGCCTCATTTGTGTTTACTTTTACATGTATAAATtctcattaaaaacattactaGCAATCAAACAAAGAGGAACTGAA

Function

GO: NA

KEGG:

id description
K06562 LAMP3, CD208; lysosomal-associated membrane protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026930475.2 True 1175 mRNA 0.44 6 11973681 11980660

Neighbor

gene id symbol gene type direction distance location
mccc1 mccc1,LOC106613934 coding downstream 465 11958278 ~ 11973216 (-)
sox2 sox2 coding downstream 227846 11742948 ~ 11745835 (-)
LOC117598431 NA coding downstream 452061 11520119 ~ 11521620 (-)
LOC113536618 LOC108271381 coding downstream 492172 11478608 ~ 11481509 (-)
psmd1 psmd1 coding downstream 497713 11428605 ~ 11475968 (-)
s1pr4 LOC108270882 coding upstream 82335 12062995 ~ 12065799 (-)
enc3 enc3,LOC108270871,LOC108430247,LOC107593050,LOC107731329,LOC107755983,LOC107695631,LOC105900972 coding upstream 330946 12311606 ~ 12324367 (-)
tmprss9 tmprss9 coding upstream 353542 12334202 ~ 12353009 (-)
lsm7 lsm7,LOC107593053 coding upstream 372485 12353145 ~ 12355924 (-)
mfsd14a1 mfsd14a,LOC106613595,LOC107704433 coding upstream 392575 12373235 ~ 12387875 (-)
G179972 NA non-coding downstream 195936 11728277 ~ 11777745 (-)
G179827 ttc14 non-coding downstream 411338 11558919 ~ 11562343 (-)
G179727 NA non-coding downstream 778008 11194437 ~ 11195673 (-)
G179487 NA non-coding downstream 1394221 10578420 ~ 10579460 (-)
G179485 NA non-coding downstream 1397649 10574536 ~ 10576032 (-)
G180111 NA non-coding upstream 15510 11996170 ~ 11996383 (-)
G180127 NA non-coding upstream 72621 12053281 ~ 12054861 (-)
G180278 NA non-coding upstream 92609 12073269 ~ 12074531 (-)
G180277 NA non-coding upstream 94578 12075238 ~ 12084317 (-)
G180273 NA non-coding upstream 194202 12174862 ~ 12300865 (-)
fxr1 fxr1 other downstream 84532 11862989 ~ 11889149 (-)
LOC117598402 NA other downstream 441648 11527957 ~ 11532033 (-)
LOC113536577 NA other downstream 455287 11510846 ~ 11518394 (-)
LOC117598430 NA other downstream 469719 11491707 ~ 11503962 (-)
G179803 ncl other downstream 553635 11409092 ~ 11420046 (-)
ncln ncln other upstream 39752 12020412 ~ 12032006 (-)
G180485 s1pr1,LOC107715096,LOC107592715 other upstream 736701 12717361 ~ 12720476 (-)
rc3h1a rc3h1,LOC108429496 other upstream 771418 12752078 ~ 12782535 (-)
rpp21 LOC108271386 other upstream 1259063 13239723 ~ 13243200 (-)
ptprsa ptprs,ptprd,LOC107559826,LOC107679075 other upstream 1566254 13546914 ~ 13783127 (-)

Expression


Co-expression Network