G179972


Basic Information

Item Value
gene id G179972
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 11728277 ~ 11777745 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU212928
TCTCCTCTGATTCTCCTCTGATTCTCCTCTGATTCTCCTCTGGCTTTCTGCTCTGATCCTCGGAGGTGTGTGTACACACGTTTATGGTTAGgccttgagaaaaaaaaagcagtagcTGGAAAGATGCgcgcagagagagaaagagaaagagaaagcgagagaagCGGAGAGAGCGGGCAGCGGAGCGCGGCTTGGCCGGGAGCAGCGCACCGGAGAGCGGCTACAGCTCACACGATTCCCCGCTGCACCGCTGGAGGATGTGGAGCGAGTCGGAGCTGCGTGCTGACGgtcaCGCTGGAGGCTCGATAAGACCCGGATGCAGAAACGGCGCTGCAGCTGATTTACCTGCAACAGGTGGTTCTTCAGATCAAGGGTTCACACTTTGTCCTCAGCTTCCTGCATCCTGGTGAATCAGCGTCGATCTTCTTCACTAAAAGATGTTGGTAACGTGATCAAATTTGTGATTGGATGATCAAGTGGATCCTAAGTTCCACCCTTGCTGACATATGGACACCTGTCAATCAACAAAAATCAGGACgagtcatgtgactgtgctcgTTGCTGTATTTGTGTGCAGCTAATATGTTTCTGTACATAAAATTCTGAATGGTTATGGTTATTGAAAGGGGCAGGGCTATGATAAGGGGTGTGGTTATGGACCCTTTGAACCCTGTGGCTATGAACTCCATATGAACTCCTTTGCTTGTATAACCGACGTTAGCCACCAACGTGTTCATACTGCTAGTACAGCAGGATATtagtggtgtgtgtaggtgtgtttaCCTGAAGCTTAGCTCACCTTTTGgccattaacacacacttcgCAATCGCACCACGCTGACTCCAGGGTGAAGGTGAAAGTGACTGAGCCGCTGAGTAAATATGACTTTAAAGCTACACAAGCTCGCAGCGCCGTCTCAGGTATAATGAGTAGTAAAAAACATAAAGTACATTTTTGATTCAATCTTTTCACAAATGATTCAATCTTTTCGCTAATTCCACATGGCTAacattttcattattgtttAAACTTTCTTTCAAAAAGGTAAAACTTTTTGGCCAAAAAATTCGCCCAGCCAAAATTTCAGTGCCTCCCTAATAAATGTAGCTTATGATGTTAGCTATTTATGCGTCTAATATTAGCTAAGTGGAACACACaatgatagattttatttcacattaatgaaatcAAAACATTCTCTATTTACTATGACAGAAACTGAAGTTTTActcctgttataccacagcaatttgacagtaattgaacatttctttattaaacaatgacatgtcatacttttcatccatttatagttacatttaatgttgtggaatatctgtgaaacaagttcctgttctctcttacattatagcagctataaacagtcgttctgtcaccagcctctcttttttctctctcttgaagttaataagccgaAAAAAAGCAACTTGTTATATTACCCACAAACagcaaaaagcgtaaactcctctgtcctgaagatgtccaaaaacctaaagttacagcgttacctctgactgttacaaagccctgacactggagactccttccataaatgttaaacaaacatctccttacaagaAGAAAACTTTACCGTAGCAGtgattttttaatccttttatgtTGAGTGTCcactgtacgagtccctgtgaattagctgttactatagaaacgataacatatcagaatgagtgcattaattataaactgtcagagctgctatagaaatataaattatagaaaatcaacactttctgaccaatcagaattgcaaattcaacagcacattggtgtaatataaaatatattttgctatttctgttatttgtgataatgaaggatgTATCATCATGACATATGTTATAAAGTATAACCTGTTACACATGGat

Function

GO:

id name namespace
GO:0045202 synapse cellular_component
GO:0005102 signaling receptor binding molecular_function

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction
ko04727 GABAergic synapse
ko04723 Retrograde endocannabinoid signaling
ko05032 Morphine addiction
ko05033 Nicotine addiction

RNA

RNA id representative length rna type GC content exon number start site end site
TU212928 True 1908 lncRNA 0.41 4 11728277 11777745

Neighbor

gene id symbol gene type direction distance location
LOC117598431 NA coding downstream 206657 11520119 ~ 11521620 (-)
LOC113536618 LOC108271381 coding downstream 246768 11478608 ~ 11481509 (-)
psmd1 psmd1 coding downstream 252309 11428605 ~ 11475968 (-)
LOC113536755 acap2 coding downstream 490468 11196039 ~ 11237809 (-)
polr2h polr2h coding downstream 614688 11110545 ~ 11113589 (-)
mccc1 mccc1,LOC106613934 coding upstream 180533 11958278 ~ 11973216 (-)
LOC113536502 NA coding upstream 195936 11973681 ~ 11980660 (-)
s1pr4 LOC108270882 coding upstream 285250 12062995 ~ 12065799 (-)
enc3 enc3,LOC108270871,LOC108430247,LOC107593050,LOC107731329,LOC107755983,LOC107695631,LOC105900972 coding upstream 533861 12311606 ~ 12324367 (-)
tmprss9 tmprss9 coding upstream 556457 12334202 ~ 12353009 (-)
G179827 ttc14 non-coding downstream 165934 11558919 ~ 11562343 (-)
G179727 NA non-coding downstream 532604 11194437 ~ 11195673 (-)
G179487 NA non-coding downstream 1148817 10578420 ~ 10579460 (-)
G179485 NA non-coding downstream 1152245 10574536 ~ 10576032 (-)
G179478 NA non-coding downstream 1164825 10561403 ~ 10563452 (-)
G180111 NA non-coding upstream 218425 11996170 ~ 11996383 (-)
G180127 NA non-coding upstream 275536 12053281 ~ 12054861 (-)
G180278 NA non-coding upstream 295524 12073269 ~ 12074531 (-)
G180277 NA non-coding upstream 297493 12075238 ~ 12084317 (-)
G180273 NA non-coding upstream 397117 12174862 ~ 12300865 (-)
LOC117598402 NA other downstream 196244 11527957 ~ 11532033 (-)
LOC113536577 NA other downstream 209883 11510846 ~ 11518394 (-)
LOC117598430 NA other downstream 224315 11491707 ~ 11503962 (-)
G179803 ncl other downstream 308231 11409092 ~ 11420046 (-)
nppc anfc4 other downstream 481967 11243847 ~ 11246310 (-)
fxr1 fxr1 other upstream 85244 11862989 ~ 11889149 (-)
ncln ncln other upstream 242667 12020412 ~ 12032006 (-)
G180485 s1pr1,LOC107715096,LOC107592715 other upstream 939616 12717361 ~ 12720476 (-)
rc3h1a rc3h1,LOC108429496 other upstream 974333 12752078 ~ 12782535 (-)
rpp21 LOC108271386 other upstream 1461978 13239723 ~ 13243200 (-)

Expression


Co-expression Network