G180277


Basic Information

Item Value
gene id G180277
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 12075238 ~ 12084317 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU213329
TATCACGTCACGCAAACCACTCTCTTGTGAGAATTTGACACCAGTCTTGGCTGAGctcaataaaacactgctggtCGTTTAAAACATCGGGCTGGAGACGTGCTGTGCCGAGGTCTCCTGCTGGGACACATGTGGTTCGGCTTTAGCTACCTAAAAAGTTTTACTCCATTAGAGAAAGTAACCAGACCTCTGATTACAGGAtgcacacaaacagcatttgttgCTGGTCGACTCAAAAAAAGCAAAGATATAAAAGTGTAAAGGTAACATAATTATTCCTGAAATGTTGGGTACATTAGAGAAAGATAATTATTCACCACACAGCTAACTGTAAATACTTTTGTATTTATAACTgtactattaattaatgaaacagTGATATAACATAAATGCTTAATTCCAATCTCTGGTCAATGTTTGCTTCCTCTTCACTGTTTCAGCTCTAAGTTGACCATGCTATTGGAACACTAACCTCATTGCCTTTGGTCAGATCTCACTGGCGTTTTGGGTTTCATTAAATCACTACAAGCTGCGTGTACGTTTTGAGTCAATCCAGCCTGAATATTACAGTCAGCTGCATGCAAACTGCTCCAATCACAACCAAACActcttcagaagaaaaaaaaatcttcatgtctgacaaataaatatatatgcttTTGGTTTGTGCCTTGGCTACAGAACCAGAACCCCTTGGCTAGTTTCCACATCCCAAATCCTCCAGCATAAAAATCGACGAGGTCACTCGCATCCAgttctcattaatattcacaatGTGACACAGTGTGAGCAACGAGCAACAAGCATGTCAAGGAAACTTTACAAGGAAAGTTGGACCTTGACTGCAGACATGTTCTAAAAAAGTAGAAATCTGTAACCGCAGAATATATATCCAACTCTAAATTATCACTACACATCCAGTTAGTACAAGTTTACTGAATATCAGAGAAAGGTGGGAGTGAAATTTCACCTATTGACAAATTACTTTTAAGGGCCATACTAAAACTTTGCCAATTCCTTATCGCCTTTAGCTAGACAAACAATGCATGCAGATTTAAgtccatttttaaattaactttttaaTACTGCGATCAACTTTAAGACATGCTCAAATCTTTAAAGTCCACATGAAATGGTTTAACACGGACCAGCTCTGTGTTATGCCAATGGTTTGGGAATGGGCACATacgggtttgatggtcaggtggccACAATAAGCTAGCTTAGTGAACTGGATAAATATAGAGAACAGCCGTAGAAGATTTCTCACTGCCGCCTTCACCCAGATCTGTCCACTTTAACCAGGACAATATCCTAGACATAAATCCCAACTCACACAAACTCTAACAGTTGGAAAAGGGAATATTGTGCAGAAAGACGCAGAGCTAAAAACAGACCGATAAATGTGTTTACTGCTAACAAGCAGCTATAGTAGAGCAAGACATGCACCCAGGGGCAGGACATATACACGtactagagagcatttaattggacaaacacAAAACTAGTACAGCATAAGCCATCAAACATTGTAATCCTGCTCCCAGAAGTGACAAACTATAATATCTCCAaaactatttttgtattttttctggATGTACTATCGTATAGTAAATTGTTGGAGTCTAGAACACTAAGGGACAGAAACAAAAAGCTCTAAACcaccattttttatttcaggggCTCTTTAAAGTGCTGTAACTAGGTCACATAAGCTGGAACACATGCCACTGCATCATGCAGGAGTGTGTACTGCGGTGCCCTAAACACATCTTGAAAGTATTAAGTATAGTGAGATGCTATAATTCACTTGGATGCGACGAAGGATGAAATAAAGAGGACCATAATTAACTTCTGACCATGCAGTCACGTTGCAGAGAGTGTGCAGGAAACTTTGTCCTACTTTATCCAAGTGGGTTAACATCGCTCCATTAAGTCTCCCAAGTTTCAGGATACTTTCTTTGCTATTTTAAACCGAGAACATTACAGCTCCAGTCATTAATCAGAGCATGATGAACTGTTGCTGTTGATTCTGCTGCCTCTGCCTGAAAATGCAGAGCTCTGGGATTAGTTGGCATATCCAAATGGAATCTCACGTCACGGAGTGGCCTCGCCTTTCTGACTTAACTTTGCCGTTCTGAACTCAGCCTCAGGGGCGCCTACAACATAAAGGCAGATGCTGAAAGACAAACTGGAAAATGTTCTGCCTGGGAGAGTctgccattttgtttatttctttattactttTCGTATGATTAGATATGTACTGTTTGTTTTCAGACAGGACTATAAAGCAGAAATGGACACAGCAGGTCTTatgaagattttaaaaaaatctaggCTAAAAGTCTCCCTCTTCCTTAATTTCTGCATTCTGAGAACCAAAACTGTGCAATGCCTGCGAGACAACATATTTCTGTCATAGAGTACTACAGGTCAAGATCACAGCTTCTCATTCTCACTCCCTTTCTAGTCACAATATCAAGAAAAAGCACAGTATAAAGTTTGCAAAACACTTTATACTGTGGAAGATCCACAGATGAGATGCCGATGAGTTacatcttttctgtttcttcttttttgggAGGTACTTTTATTCAAAGTAGTGTACAAGTGAGACAGAATCTAATCTAAGTGGCAGGTTAAGCAGTTTAAAGTTAAGGATCTTGCTTAAGAGCTCAGGCTCTGGTAATCCTGGAAACTGAACTCAAAACCTCTTTGGTGTGATATTATCCTTTGCAGTACTAATATCATACAAACCCTAGACATCTGGAGTGTCTGTCATGTGTCAATCACCTGCCAATATATCAGACTGATATTTTTAAAGTGAATGAAGACATACGCCAAAGACAGACCATTTGTGTGAAGTTAAAACACCCCCATGAAAAAATCTGAAACATGTACGAGGTCAATGCTCCATCAAAAGCAGCACAAAAACTCATCATATAACTCTCCCGCTTATTACATTAGTCATTTCATGGTTAAACACgtggagagaaaatgaagacACTAGCCAAACTAGGATATCTTTTACATGTGATTCAAGGAGAGCACACCACATCTGATAGCTGAAACATTCACCGATAACTTTTTGCTGAGAGTGCAAATACGATGCGCTACATCAGAAACTACTTTAGATGTCATATGTGCTCGTATAGAATTATCCTCAAACTTTAGTTTATAGTTAGGCTAAATGTCCACTAGTCGCAGCGTGAACTTCCCTCCGCTCCCTTCTCCAACGCCTTGCTGCTATAGGGGCGTGTCTGTCTAGAAGGCGGgatgtaaatgaatcatgaaattGTGGATTTCATATAAATTATCTTCTGGCTATTGTAATAAacttatgaaattaaaatattccttttttttttgtctatttacagTAGCATCCAATGATGCACATTCCCACACAGATGTGCTACTGAAAAAAGTGTTCTCATCTATAGATACAGAGTCGAAACTCTGAACTCAAAACATGCTGCAAACAGACACATTTGTTTACGGACAGTGGAAAAAGTTGTCTACCACTTGGCTGCCTCttgtaatttgcataaagttgaaaCAAGCTGAACTTTTCTTACCAGTCATTATCCCATAATCACTCACCCAATTTCTTTTGTTACTCCCTGTTAGCAAGTGGGTGACGAATTCTCATACAGTAGATATTCGGCCTTGAAGTATGCCTTGTATAGCCTTGGGTCTACGATCCCAGAAGTAATTAAAAAGCATCAAtgctaaaatattttctcaATCTAATACTCAGATTAGAAAAGTGGACATGATGATAAAGCCAGAATGAAACAGAAGTTAacttttagaatttttaaaaaagcttaaAGCTAAGGTCATGTTCttatctctatctctcctgcagtgaacatttatttattgatttgccAGCTTCTTCTAGCTAAAGGTAGAAGAGTGAAgcatagaaataaaatgttgagggttaagggtccaCACTTAAGGGGTCAGCAATGACTGTTCTGGGATTCAAACGTCTGATGACTATCGCTGTGAAGACACAGACATTACCAACTATAGGACAAATACAGCAAGAGCTTGAAAGAAAGAGCTTTTAAAATACAAAGTTATTTACTGAAATAGCACAGCAACACATGTGAACAAAGCTAACAACAGAGTTAGAGTGAATGAGCTCAGATGTATTGAAGATGAAGCATTTAACAATGTCTGTAGCACTTAAACCATTGTCTACAAAAtcactcactctatctctctctctctctctctcacacacacacacacaccctgcttcCTGTATGAGCTCAGCGTCTGAGTTTACAGTGAGGACACGGACATGAGTGCCACTCACTGCTACTGAACCACTCACCACCAATAATCAACTAAAGAGTGACAGAATGTTTTCCAAGGCCTAAACACACGACCGTTTGTCTGACTGGAAGGCTGACAAAAGTTGTTTGTGATGAATCATGGTGTAGGGGTCAGTCATCAGGCACAACGTAGCAATGATCCATCAACCCTAAAACCTTTAGATCCAGTGTTTTATCACCGCTCGCACAATGAATTACACAGGAAGCTGAGCTGGCCTTCTCTAGCCACTTGGTCACCACTGCATGCCTTTCTTTAGTGTTCCTAGACAATCTGCACTTATGGTTATCATCTCTACTAacaaagtaaagaataaaacactgctggtAAAATGAtgcctgttttctctctctcataaaaatgcagcttgtcatgttaccgagaaactgcaaaaagcGTAAACTAAAGATGTTTGAAAACTTAGTTACGgctttacctccgactgttaaaaccgctgacactggagactccttccataaacgttaaacaaacatctccttacagaaaacatcaccatatcaatgattatatatgGTTTAATCAATATATGGGGCATCcgccatgtgaatgagctgttactatataaacGATcgcgtattagaatgagcacgttaatataaacctgtgatttgcagctggactactgtcagagctgcttttatagaaactTAAacaacatctgaccaatcagatttgagaatttaacagagctgtggtgtaaatgaATACAGCAAACATTCCAGGGAACCAGTCTTTTGCCACTTGGATAAAACTTAGAAATTTAGTTCATTTAATTCTGGTGTCAATTAGGCAAATGTACCCAATGTATTCAGACATAAGTGCTCTCGATTAAAGacctttttatttaatcttgtcTGTACTAATAGTATTTGCTTGTTAATTGGATCTGGTATGGGTCTCTGAAAATGAGACAGTGGTCTGAGAACAGCTTCCACTgcgtcataaataaataaaaggaaaagcagattgctgggattttcactctTGGCAGAAATTGTGTTGCATAGtgagggggaaagagagagaacctCTTGGAGTTTGGCCTACAGGAGACATTTCTCACTGCAAGAATTTCAATCAGACTCACTTGGGTAGTCTAAAAAAGATTTCTGCCTTACAGCCTGGAAATGTATGATGTGAAATCTGCTAGGTCATAATGAAGTTGTAGGCAGGAATGACTAGCTTTGACCAAAGGCATGATCAAAATGAACTGATGCACTCAATCTAgcatgttttcacacttggtctgAATACACAGGTCTGCACTCATAATCGCATGTTTtcttacacattacacagtttGCTTCCAAACTGTGAATCAACAATGCACAATTCCATAAATCACTTCTGTGAATGAATATTTACAAAATGGTGGACACCAGggtcatcatttttttaaattacagcaaAAGCCCCATTTCGGCTGTTTCAGTCACTGTGGTTTCACTCAACCACAGtttgaaaaaattaaacagaaaattcCAGAAATTCAGCAAACATTCATAATTTAAATTGTGCGCCGCTCTGAGTAACGTGATGAAATCTCATGCAGTCCCACCCAGGATGTTAATCATCCCTTTGTCCAGCGTATCCACGCTGTATACGCTACTCAGCCGTTTTACATACAGTGTTTGCTACTATCCGCGGTTTCAGGCATCCACTGAGGAGCTTGTAACCTATCCCCTGTGGATACGGGGGTCCTACTATGTTTTACATTGGTACCGACAATCAAGTGGTGAAGAGCAGAGCGCTTTTTAAATGTGCAGGAATACTGGCAAATGAGGAGCTGTTCTTGAACAACATTATTTTTAGCCGTTTTTCATGATCCTCTGAGTGCAAGCACTTTCACTACAAAAGTGAGCTAATTACAGCCCTGACTACATCAGCCCTTTCCCCACCATCAAGGaagtagaaacaggaagtagcaTGACAAGTTGCACCAATCACGTTACTCGGCGTTGGGCACCTAGTGCGGATAGCTTCCACATCTGATATGCACCAGTGTTTAGTAGAAGTGAACCCCTGATCACCATTTTCAAGAGGACCAGAGATCGGTGCTCTGGACTGCTCTGGGGCTTGAAAGCAGCATTCACACTTCACCAAACGTATCGCATTGAGCCCAGAAAAAATGCAAGTCAACAAAAGCATGTGTATACAGCATTATGCACATATGCACTTCATTTCGATCTCAGTGTTGCACTTGAAACTCTCAAATGAAACAAGTGGTGTTGCGGAAGTTTATTTCACACAAAATCAACCAAATCTGTTTCGCTATAAATTGAGGAATTGGCTCAACCTTGAAAACTTCATGACTAAGATATTCCACAGCCCAGACTTGTtgaaaaaagtggaaaacaaAGTATGACAAAAAGTGTACGACAAAGTGgaaacagcacagagagagagagaatataggACCATTCCCAACCGACCAGACCCACTTTTCTCTTATATACACTGTAATTatggttatttttaaaacttggcTCTGGAGGAACAGAGATGCCATCAGACCTAGAGAATGCCATCCTGGGTGAGTTCACTTTGAACACTCGAGTTTTCACTTAACATAGTTTATATACGTTTCCACTAAACCATGAGTGCATCACCTGTAATGCACATGACTCTATTGGTTATTTGGTACACGACTGAAAGCGGCGTTTTCTTCTCCCTATAAAGGACACACCCTTCAACATCCGTGTCAAACTGCATCGCGGCATTAAAGGCTGGATTAAAGGCTTctcttcaccacacacacatgcacacacacctcacactgtgCTTTAGGTTCTAAATAGACATTCTGCACATTTTACAAGGTCTGCAACATCTCTTGGGATCTGTGGCCTACTTCTTTTTAGGAGCAAACTAATATCTTCAGTTTTGATATGCATCATCAGAGATGCCAACAAGAAAATCGTAGCaggcagaggggaaaaaaaaaacaaaacgtaaTTTAACCACGGAAATTCCTAGTGTGTCAGTGGATGAGacagttcatttttttccagaaagaaaataacaagagaaaagtatggtttGATTGCTACTTAATAAACAGCTCCTCCATTTTctaccaaacaaaaaaaaccacaatccAGCCCACTTTATTCCTATTAGCTCACAAGCCTGTGGTAAATTCACAAGTCAAATATCACCTTATGTTTTTGTGCCACAAAAGTAGCAACCAGAAACAAATGTGTGTcttttcaaaaCTCATGAAACGTGTGGATTATACAGTGATTGGCCGCAAGCAACAACTTTCTTGgcatacataaacatatttttaatatatcttGTATGAAGTCATCAAGTcaatgaagacatttttattccaaTTCATCACACTAATCAACCAGTACTCCCACTTCCCTTTCTCAACAAAAGGCTTTTGCGTAGAGTCCACTGAGCATTATGTTCATACACAGCTCAAGACGTTCATATATTCCAGTCAGTGTAGAGTTTACCACGTAGGCTGTGGCTTtaagtgtgttacagtgaattagcaatttcctgtcactgtcTCATGAAAATCCATCATCATTTCCAGCTCGGGTCATGGGGATCAGCTCCAGTGTTGCCCTTACTTGGGCTGGGTCTgaaatctcatttttaaaaaaatatgccaAATAGTGCTCCAGGGAGTTAAGTATCTCCAAAACTACCATATAAAAGGTAGCCAGTCAAAACTAGGAAATGTGTAAACACGTCACTGTTCAATCTCGTAATTCTACTGGTATGGAAAGGTCATGACTTCTGATGTCATAAGTCAGCTCTGAGAAGATGAATACAAGCCTGGCTGTATGGGAACTAATATGATTGATTATGCTTCACTAATATGCCACGGAGAGGTCAGCAAAGGTTCACATGAAGAGTGGGCGGCGTGGTGTGATAAGGAAATCCGAAATAGTGACATAGCTAACATGAACATGCACTCATACTAGCAAACAACGGGTGACTATGCTTGTCTTGTGTACGTTTGAGAAAGTCGAGGGGTCGCAGCCCACCTTTTTCATGTGAAAGCATTCTTGAAAGAATCCGTTTAATTTACAAGGCCCTAAGTAACTGCTTCTTATTATACAATCCCTGAATctcaataaatatgtaataaactgTAAGTAAGCAAAAGAGGATGTATCTTAAAAACCTCTGGGAGCCTGCAAAGATCAATTTAGAAAGTACATTGCTAACTAAGGTTGGAAATATTTCCTGCTGTTAACTTTCCACTGCAAAGAAGACTTTTAACATGTCAGAATGTTTAGACATCATACAACCAGTAATAAAGCAGATCTATCCTAAATTATATAGACTTTCATTAATCTTATAAAACATATGTAAAACATCTATAGCTAAAAATATTGAGGCTTTGAGTCCGCTCTCTTCTATCAACATGCACACAGAACGGGATTACTGACTGGCCATGGCCTTCTATATTGCATATTCACCCAGGACGATGATTGGCTAGCAGACAGAGCCTTAGAGTGCCAAGCTGACTCTGACTGAGACTATGTGAGTTTGGAgacagggctttttttttaatctaaaagtatatattgaaaatgaaaaacaacaccATGTGAGAATAAAATA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU213329 True 8964 lncRNA 0.39 2 12075238 12084317

Neighbor

gene id symbol gene type direction distance location
s1pr4 LOC108270882 coding downstream 9439 12062995 ~ 12065799 (-)
LOC113536502 NA coding downstream 94578 11973681 ~ 11980660 (-)
mccc1 mccc1,LOC106613934 coding downstream 102022 11958278 ~ 11973216 (-)
sox2 sox2 coding downstream 329403 11742948 ~ 11745835 (-)
LOC117598431 NA coding downstream 553618 11520119 ~ 11521620 (-)
enc3 enc3,LOC108270871,LOC108430247,LOC107593050,LOC107731329,LOC107755983,LOC107695631,LOC105900972 coding upstream 227289 12311606 ~ 12324367 (-)
tmprss9 tmprss9 coding upstream 249885 12334202 ~ 12353009 (-)
lsm7 lsm7,LOC107593053 coding upstream 268828 12353145 ~ 12355924 (-)
mfsd14a1 mfsd14a,LOC106613595,LOC107704433 coding upstream 288918 12373235 ~ 12387875 (-)
ifi44g NA coding upstream 304139 12388456 ~ 12395897 (-)
G180278 NA non-coding downstream 707 12073269 ~ 12074531 (-)
G180127 NA non-coding downstream 20377 12053281 ~ 12054861 (-)
G180111 NA non-coding downstream 78855 11996170 ~ 11996383 (-)
G179972 NA non-coding downstream 297493 11728277 ~ 11777745 (-)
G179827 ttc14 non-coding downstream 512895 11558919 ~ 11562343 (-)
G180273 NA non-coding upstream 90545 12174862 ~ 12300865 (-)
LOC117598410 NA non-coding upstream 154802 12239119 ~ 12249113 (-)
G180361 sass6,LOC107756018,LOC107695611,LOC107731314 non-coding upstream 279782 12364099 ~ 12366101 (-)
G180387 LOC108271398 non-coding upstream 402358 12486675 ~ 12487417 (-)
G180392 NA non-coding upstream 423624 12507941 ~ 12508232 (-)
ncln ncln other downstream 43232 12020412 ~ 12032006 (-)
fxr1 fxr1 other downstream 186089 11862989 ~ 11889149 (-)
LOC117598402 NA other downstream 543205 11527957 ~ 11532033 (-)
LOC113536577 NA other downstream 556844 11510846 ~ 11518394 (-)
LOC117598430 NA other downstream 571276 11491707 ~ 11503962 (-)
G180485 s1pr1,LOC107715096,LOC107592715 other upstream 633044 12717361 ~ 12720476 (-)
rc3h1a rc3h1,LOC108429496 other upstream 667761 12752078 ~ 12782535 (-)
rpp21 LOC108271386 other upstream 1155406 13239723 ~ 13243200 (-)
ptprsa ptprs,ptprd,LOC107559826,LOC107679075 other upstream 1462597 13546914 ~ 13783127 (-)
LOC113527598 LOC108271251,LOC108441295,LOC107742801 other upstream 2274203 14358520 ~ 14361647 (-)

Expression


Co-expression Network