lpl (lpl,LOC108271131,LOC107588078,LOC107665505,LOC107561902,LOC107715086)


Basic Information

Item Value
gene id lpl
gene name lpl,LOC108271131,LOC107588078,LOC107665505,LOC107561902,LOC107715086
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 13037990 ~ 13046848 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026930681.2
CTATTTCTAGTGGAAGTGCTGAAAGCGCGCAGGACATCACGCTCAGTACTCTCACCCGGACTAAACCAAACTTTATTctgcaattattattaaaaaaaaaaccgagTAAATATTTAGCACTTGTCGAAGAGAATATGGGAAGAGAAAACCTTGTTCTGCTCATCATCTGGATGTATTTTTTGAATCTTTCTTCCAGTTTTTCAACCACATTTGCTCCACCAGTGGAACCAAGCGCATTCATAGGCAACACCACAACCAACTCTACAGACTGGATGGTGGACTTCAGTGACATTGAGTCCAAATTTGCTCTGAGAACGATTGAGGAACCGGAGGATGATATATGCTACATCGTTCCTGGCCAACGGGACAGCATTAAAGAGTGCAATTTCAATCCAGACACCAAGACTTTTATAGTCATTCATGGCTGGACGGTCACTGGAATGTATGAGAGTTGGGTTTCCAAACTGGTGACAGCGCTGTACGAACGCGAGCCAGTGGCCAACGTCATCGTGGTGGACTGGCTGGTCCGGGCACAACAACATTACCCAACCTCAGCCGCCTACACCAAGCTTGTGGGCCGCGACGTGGCCAAGTTTGTCAACTGGCTACAGGCTGAGCTGGAGTATCCATGGGAGAAGCTTCACCTCCTGGGCTACAGCTTGGGTGCTCATGTAGCCGGCATCGCAGGACTCCTCACAAGGAACAAAGTCAGCAGGATCACAGGCATGGATCCAGCTGGCCCAAGCTTTGAGTATGCTGATGCCCAGAGCACACTGTCCCCTGATGATGCCCAGTTTGTTGACGTGCTCCACACCAACACACGTGGCTCTCCGGACCGCAGCATCGGCATCCAGAGGCCCTTGGGCCATGTGGACATCTACCCCAATGGGGGAACGTTCCAGCCTGGATGTAATCTGCAGAACACAATGATGATGGTGGCTACCACAGGGTTGAGAAACATGGACCAGATTGTGAAATGTTCCCATGAGCGCTCCATCCACCTCTTCATCGACTCCCTGGTCAACATGAAGCAGCAAAGCATGGCGTACCGCTGCAGTTCCAAGGAGACCTTCAACAAGGGTGTGTGCCTGAGCTGCCGCAAGAACCGCTGCAACAAGGCGGGCTACGAGGTCAACAAGGTGCGCAGCCGCCGGAGCAGCAAGATGTACATGATGACCAGAGAAATGATGCCGTACAAAGTTTTTCACTACCAAGTTAAAGTCCATTTCTTCAGCAAGAGCAAGATAAGCTATACAGATCAGCCCGTGAAGATTTCCCTGTATGGTTACTCTGGAGAGAAGGAGAACATCCCCTACATTATACCTGCTTTGAAAACCAACATCACCATCTCCTTCTTACTCACCACGGATGTGGACATCGGCGAGCTGCTGATGgtgaagctgctctgggagAAGGACACCATCCTCAGCTGGCCCTGGTGGAACCCCGACACTTTCCACATTCGCAAGCTGCGCATCAAATGTGGGGAAACACAGTCCAGAGTGATCTTCATCGCCAAGGAAGGTGAGTTCTCCTACCTTGCTCGTGGAGGGGAAGCTGCTGTGTTTGTGAAAGACAAAGAAGCTCAGTCAAGCCGCAAAAATGAAAGATTGCACAAGTTGAAGATGCATGGCAGCTCATTCAAAAATACTGCCTTAGATGCTTAGAGATGCTCTCACACTTCCACCATTTTGCCAGAGGAACCAGCTGAAACTGGACTGGGAAGGAGACGGTGCAGTTTCTGTACATTCTGATCCGAGCAAGTTGCAGAATAGTAGCAATTGTGTGACCTTCACCCATAAGCACATCCTGTAAGGAACTTTTACTTGTGATAACCTTTAACTGCTGagcagtttaaataaaaaagcctaACTTCTGATTACCGCTCAGTATTATCGATTAGCCAGACTTGATCTGAGGTCACTGGAGCTCAGAGTAGAGCCAGAACCTGATGTGACTGGAGCCTGACCACTTCTCATTGGCTGTAACTAGGCATGTGCCGATGATAAAATCGGACCATTCAAAAGACATCATGACTGAAATACTGCTGAGGTTTGTTTATGGTTGAAAAAGCTGACCAATGAGACCAGCAATGATTTTATGATAATAGTGATAGGCAATAATGGTAGGAAAATCGTGCACATGCCTAGATgctaaatatttctttaaatgaaaGATAAGAAGTCTTTTATTGTTATGCAATATATATGTGCGTATATGTAAGTAAACCGTTACActgttataatgtgtgtattgaaTTTCTGTCAGCTTTGGTCAAACCGAAGTGAAAGTAATAAACAATGTAGGGCAAAGTGGGCGTCACGTGGGGCTGCACTCAGGTCACAGGGGCTTCGTATgcctgactgactgactcacttaGTCACTGACTGACGGATTGACTcattgactgactgattgatttgctgactgactgattgattcaCCAGTCACTGACTGAATGACTCACTGACTAATTGATTTGctaactgactgactcactgagttactgactgaataactcactgactgactgattgatttactgactgattgatttgctgactgactgattgactcACTGAGTTATTGACTGAATAACTCACTGACTGACAGATTGATTCATTGAGCCACAGACTGATTGACTCAATGAGTCACTGACTGATGGACTCACTGAGTCACTGACTAACTCACTGACTAGCTCTGAAGGTGAAACCACCTGATGAAGGGAATGATTTTTGTGTCCCTGTTTACCTGCCTACATAGCAATCAAACACTGAGTGTCCTTGATCACAGTGAAGTGGCTGGTGATGCCATGTTGAGGTAGTTTATAATGACGTGATGCTAGGCTTTGTGTATAAGATGTCATGGTGAAATTTTATAGAGTATAAAAGGTGCACAACACTCTAAAACTCTGCGAAACACTGTGAAGCTGCCTAAAACCTATATACTACCTATCAGATACACTTAATGCTGTAGATCCGATCTACATGCAGGAATTTAGCAGTCCACTTTTTACCATAGAATTTAAGTAGGCATAGTATGTTGACCACTTGCTAGCAGGGGACCAAATACTCTCTTAGCTGAATCTATATACAGAAATGATCagtgtaaatatgtttaattgttCTATATTTGGAAATGTGTAAGTTTAAgttgtttttgtgtctgtgtttgggtTACTGTGTTTGGCACAGGTCACTTTATAGGCTTGGATTAGTTTCCTGTTCAATCTATTCATCACTTAATGTCACAATCAGATGTTTTCATTCTTTTGGTCAATTGCTCACAATTAAATCAAAAGATCACTCAAGACCTAAAACATATTTGTCTAACGTTTAGGTTTTGATTGGTTTTCAGTATTTAATCATACACTTAATTTTGCCTTATAATGTGCTCTTCTGCCAGATTGTTGTGAATTAAAGGAATTCTGAACATGCTTCTGCACACTTCCTGATTGTGGCTTAAGTAGGTAAACTACACACAATTCATCAGCTGTGGTGTTATAGTTCCTACCATGCACCAGAAACCTAGCCCTGAGGAAATCAGAATTAAATAGGCCTTATGAAAATTCCATCAGGATGAATTTCCCCCATAAGACCCATAAAGACAACaggattatttattaattgtatatatttgtacattAGCCTTGTATAAACAATGTATACCCTTGGGATTATTCATCGTATTAATATGCAATGCACTGCataagtatattttaataaagagtATGTTGCATTATAA
>XM_026930682.2
ACTATTTCTAGTGGAAGTGCTGAAAGCGCGCAGGACATCACGCTCAGTACTCTCACCCGGACTAAACCAAACTTTATTctgcaattattattaaaaaaaaaaccgagTAAATATTTAGCACTTGTCGAAGAGAATATGGGAAGAGAAAACCTTGTTCTGCTCATCATCTGGATGTATTTTTTGAATCTTTCTTCCAGTTTTTCAACCACATTTGCTCCACCAGTGGAACCAAGCGCATTCAGCAACACCACAACCAACTCTACAGACTGGATGGTGGACTTCAGTGACATTGAGTCCAAATTTGCTCTGAGAACGATTGAGGAACCGGAGGATGATATATGCTACATCGTTCCTGGCCAACGGGACAGCATTAAAGAGTGCAATTTCAATCCAGACACCAAGACTTTTATAGTCATTCATGGCTGGACGGTCACTGGAATGTATGAGAGTTGGGTTTCCAAACTGGTGACAGCGCTGTACGAACGCGAGCCAGTGGCCAACGTCATCGTGGTGGACTGGCTGGTCCGGGCACAACAACATTACCCAACCTCAGCCGCCTACACCAAGCTTGTGGGCCGCGACGTGGCCAAGTTTGTCAACTGGCTACAGGCTGAGCTGGAGTATCCATGGGAGAAGCTTCACCTCCTGGGCTACAGCTTGGGTGCTCATGTAGCCGGCATCGCAGGACTCCTCACAAGGAACAAAGTCAGCAGGATCACAGGCATGGATCCAGCTGGCCCAAGCTTTGAGTATGCTGATGCCCAGAGCACACTGTCCCCTGATGATGCCCAGTTTGTTGACGTGCTCCACACCAACACACGTGGCTCTCCGGACCGCAGCATCGGCATCCAGAGGCCCTTGGGCCATGTGGACATCTACCCCAATGGGGGAACGTTCCAGCCTGGATGTAATCTGCAGAACACAATGATGATGGTGGCTACCACAGGGTTGAGAAACATGGACCAGATTGTGAAATGTTCCCATGAGCGCTCCATCCACCTCTTCATCGACTCCCTGGTCAACATGAAGCAGCAAAGCATGGCGTACCGCTGCAGTTCCAAGGAGACCTTCAACAAGGGTGTGTGCCTGAGCTGCCGCAAGAACCGCTGCAACAAGGCGGGCTACGAGGTCAACAAGGTGCGCAGCCGCCGGAGCAGCAAGATGTACATGATGACCAGAGAAATGATGCCGTACAAAGTTTTTCACTACCAAGTTAAAGTCCATTTCTTCAGCAAGAGCAAGATAAGCTATACAGATCAGCCCGTGAAGATTTCCCTGTATGGTTACTCTGGAGAGAAGGAGAACATCCCCTACATTATACCTGCTTTGAAAACCAACATCACCATCTCCTTCTTACTCACCACGGATGTGGACATCGGCGAGCTGCTGATGgtgaagctgctctgggagAAGGACACCATCCTCAGCTGGCCCTGGTGGAACCCCGACACTTTCCACATTCGCAAGCTGCGCATCAAATGTGGGGAAACACAGTCCAGAGTGATCTTCATCGCCAAGGAAGGTGAGTTCTCCTACCTTGCTCGTGGAGGGGAAGCTGCTGTGTTTGTGAAAGACAAAGAAGCTCAGTCAAGCCGCAAAAATGAAAGATTGCACAAGTTGAAGATGCATGGCAGCTCATTCAAAAATACTGCCTTAGATGCTTAGAGATGCTCTCACACTTCCACCATTTTGCCAGAGGAACCAGCTGAAACTGGACTGGGAAGGAGACGGTGCAGTTTCTGTACATTCTGATCCGAGCAAGTTGCAGAATAGTAGCAATTGTGTGACCTTCACCCATAAGCACATCCTGTAAGGAACTTTTACTTGTGATAACCTTTAACTGCTGagcagtttaaataaaaaagcctaACTTCTGATTACCGCTCAGTATTATCGATTAGCCAGACTTGATCTGAGGTCACTGGAGCTCAGAGTAGAGCCAGAACCTGATGTGACTGGAGCCTGACCACTTCTCATTGGCTGTAACTAGGCATGTGCCGATGATAAAATCGGACCATTCAAAAGACATCATGACTGAAATACTGCTGAGGTTTGTTTATGGTTGAAAAAGCTGACCAATGAGACCAGCAATGATTTTATGATAATAGTGATAGGCAATAATGGTAGGAAAATCGTGCACATGCCTAGATgctaaatatttctttaaatgaaaGATAAGAAGTCTTTTATTGTTATGCAATATATATGTGCGTATATGTAAGTAAACCGTTACActgttataatgtgtgtattgaaTTTCTGTCAGCTTTGGTCAAACCGAAGTGAAAGTAATAAACAATGTAGGGCAAAGTGGGCGTCACGTGGGGCTGCACTCAGGTCACAGGGGCTTCGTATgcctgactgactgactcacttaGTCACTGACTGACGGATTGACTcattgactgactgattgatttgctgactgactgattgattcaCCAGTCACTGACTGAATGACTCACTGACTAATTGATTTGctaactgactgactcactgagttactgactgaataactcactgactgactgattgatttactgactgattgatttgctgactgactgattgactcACTGAGTTATTGACTGAATAACTCACTGACTGACAGATTGATTCATTGAGCCACAGACTGATTGACTCAATGAGTCACTGACTGATGGACTCACTGAGTCACTGACTAACTCACTGACTAGCTCTGAAGGTGAAACCACCTGATGAAGGGAATGATTTTTGTGTCCCTGTTTACCTGCCTACATAGCAATCAAACACTGAGTGTCCTTGATCACAGTGAAGTGGCTGGTGATGCCATGTTGAGGTAGTTTATAATGACGTGATGCTAGGCTTTGTGTATAAGATGTCATGGTGAAATTTTATAGAGTATAAAAGGTGCACAACACTCTAAAACTCTGCGAAACACTGTGAAGCTGCCTAAAACCTATATACTACCTATCAGATACACTTAATGCTGTAGATCCGATCTACATGCAGGAATTTAGCAGTCCACTTTTTACCATAGAATTTAAGTAGGCATAGTATGTTGACCACTTGCTAGCAGGGGACCAAATACTCTCTTAGCTGAATCTATATACAGAAATGATCagtgtaaatatgtttaattgttCTATATTTGGAAATGTGTAAGTTTAAgttgtttttgtgtctgtgtttgggtTACTGTGTTTGGCACAGGTCACTTTATAGGCTTGGATTAGTTTCCTGTTCAATCTATTCATCACTTAATGTCACAATCAGATGTTTTCATTCTTTTGGTCAATTGCTCACAATTAAATCAAAAGATCACTCAAGACCTAAAACATATTTGTCTAACGTTTAGGTTTTGATTGGTTTTCAGTATTTAATCATACACTTAATTTTGCCTTATAATGTGCTCTTCTGCCAGATTGTTGTGAATTAAAGGAATTCTGAACATGCTTCTGCACACTTCCTGATTGTGGCTTAAGTAGGTAAACTACACACAATTCATCAGCTGTGGTGTTATAGTTCCTACCATGCACCAGAAACCTAGCCCTGAGGAAATCAGAATTAAATAGGCCTTATGAAAATTCCATCAGGATGAATTTCCCCCATAAGACCCATAAAGACAACaggattatttattaattgtatatatttgtacattAGCCTTGTATAAACAATGTATACCCTTGGGATTATTCATCGTATTAATATGCAATGCACTGCataagtatattttaataaagagtATGTTGCATTATAA
>XM_034308865.1
ACTATTTCTAGTGGAAGTGCTGAAAGCGCGCAGGACATCACGCTCAGTACTCTCACCCGGACTAAACCAAACTTTATTctgcaattattattaaaaaaaaaaccgagTAAATATTTAGCACTTGTCGAAGAGAATATGGGAAGAGAAAACCTTGTTCTGCTCATCATCTGGATGTATTTTTTGAATCTTTCTTCCAGTTTTTCAACCACATTTGCTCCACCAGTGGAACCAAGCGCATTCATAGGCAACACCACAACCAACTCTACAGACTGGATGGTGGACTTCAGTGACATTGAGTCCAAATTTGCTCTGAGAACGATTGAGGAACCGGAGGATGATATATGCTACATCGTTCCTGGCCAACGGGACAGCATTAAAGAGTGCAATTTCAATCCAGACACCAAGACTTTTATAGTCATTCATGGCTGGACGGTCACTGGAATGTATGAGAGTTGGGTTTCCAAACTGGTGACAGCGCTGTACGAACGCGAGCCAGTGGCCAACGTCATCGTGGTGGACTGGCTGGTCCGGGCACAACAACATTACCCAACCTCAGCCGCCTACACCAAGCTTGTGGGCCGCGACGTGGCCAAGTTTGTCAACTGGCTACAGGCTGAGCTGGAGTATCCATGGGAGAAGCTTCACCTCCTGGGCTACAGCTTGGGTGCTCATGTAGCCGGCATCGCAGGACTCCTCACAAGGAACAAAGTCAGCAGGATCACAGGCATGGATCCAGCTGGCCCAAGCTTTGAGTATGCTGATGCCCAGAGCACACTGTCCCCTGATGATGCCCAGTTTGTTGACGTGCTCCACACCAACACACGTGGCTCTCCGGACCGCAGCATCGGCATCCAGAGGCCCTTGGGCCATGTGGACATCTACCCCAATGGGGGAACGTTCCAGCCTGGATGTAATCTGCAGAACACAATGATGATGGTGGCTACCACAGGGTTGAGAAACATGGACCAGATTGTGAAATGTTCCCATGAGCGCTCCATCCACCTCTTCATCGACTCCCTGGTCAACATGAAGCAGCAAAGCATGGCGTACCGCTGCAGTTCCAAGGAGACCTTCAACAAGGGTGTGTGCCTGAGCTGCCGCAAGAACCGCTGCAACAAGGCGGGCTACGAGGTCAACAAGGTGCGCAGCCGCCGGAGCAGCAAGATGTACATGATGACCAGAGAAATGATGCCGTACAAAGTTTTTCACTACCAAGTTAAAGTCCATTTCTTCAGCAAGAGCAAGATAAGCTATACAGATCAGCCCGTGAAGATTTCCCTGTATGGTTACTCTGGAGAGAAGGAGAACATCCCCTACATTATACCTGCTTTGAAAACCAACATCACCATCTCCTTCTTACTCACCACGGATGTGGACATCGGCGAGCTGCTGATGgtgaagctgctctgggagAAGGACACCATCCTCAGCTGGCCCTGGTGGAACCCCGACACTTTCCACATTCGCAAGCTGCGCATCAAATGTGGGGAAACACAGTCCAGGTGA

Function

symbol description
lpl Predicted to enable apolipoprotein binding activity; lipoprotein lipase activity; and phospholipase activity. Acts upstream of or within definitive hemopoiesis and response to (R)-carnitine. Predicted to be located in extracellular region and plasma membrane. Predicted to be part of chylomicron and very-low-density lipoprotein particle. Predicted to be active in extracellular space. Is expressed in several structures, including digestive system; head; immature eye; midbrain; and ovary. Human ortholog(s) of this gene implicated in Alzheimer's disease; artery disease (multiple); familial hyperlipidemia (multiple); muscular disease; and type 2 diabetes mellitus. Orthologous to human LPL (lipoprotein lipase).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0005576 extracellular region cellular_component
GO:0004465 lipoprotein lipase activity molecular_function

KEGG:

id description
K01059 LPL; lipoprotein lipase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026930681.2 True 3744 mRNA 0.44 10 13037990 13046847
XM_026930682.2 False 3742 mRNA 0.44 10 13037990 13046848
XM_034308865.1 False 1506 mRNA 0.51 8 13041002 13046848

Neighbor

gene id symbol gene type direction distance location
LOC113536692 NA coding downstream 5446 13024401 ~ 13032544 (-)
fam32a fam32a coding downstream 91170 12943426 ~ 12946820 (-)
klf2a LOC108271322 coding downstream 188344 12846851 ~ 12849646 (-)
stil stil coding downstream 235303 12783319 ~ 12802687 (-)
serpinc1 serpinc1 coding downstream 293232 12736065 ~ 12744758 (-)
gpc1a gpc1,LOC108424978 coding upstream 64964 13111812 ~ 13156018 (-)
gpc5b LOC108270519 coding upstream 111539 13158387 ~ 13231123 (-)
trnam-cau_27 NA coding upstream 189555 13236403 ~ 13236475 (-)
pak2b pak2,LOC107741800,LOC107678112,LOC107679089 coding upstream 239784 13286632 ~ 13302366 (-)
pigx pigx coding upstream 256653 13303501 ~ 13308317 (-)
G180627 NA non-coding downstream 50467 12986787 ~ 12987523 (-)
G180629 safb2 non-coding downstream 53877 12982012 ~ 12984113 (-)
G180626 NA non-coding downstream 57295 12976587 ~ 12980695 (-)
G180574 NA non-coding downstream 156079 12881655 ~ 12881911 (-)
G180541 NA non-coding downstream 290446 12747334 ~ 12747544 (-)
G180783 tpm4,tpm1,LOC103156889,LOC106946143,LOC106929302 non-coding upstream 23088 13069936 ~ 13127438 (-)
G180793 NA non-coding upstream 47315 13094163 ~ 13176020 (-)
G180819 NA non-coding upstream 204570 13251418 ~ 13272942 (-)
G180877 NA non-coding upstream 379883 13426731 ~ 13430173 (-)
G181047 NA non-coding upstream 463603 13510451 ~ 13521721 (-)
rc3h1a rc3h1,LOC108429496 other downstream 255455 12752078 ~ 12782535 (-)
G180485 s1pr1,LOC107715096,LOC107592715 other downstream 317514 12717361 ~ 12720476 (-)
ncln ncln other downstream 1005984 12020412 ~ 12032006 (-)
fxr1 fxr1 other downstream 1148841 11862989 ~ 11889149 (-)
LOC117598402 NA other downstream 1505957 11527957 ~ 11532033 (-)
rpp21 LOC108271386 other upstream 192875 13239723 ~ 13243200 (-)
ptprsa ptprs,ptprd,LOC107559826,LOC107679075 other upstream 500066 13546914 ~ 13783127 (-)
LOC113527598 LOC108271251,LOC108441295,LOC107742801 other upstream 1311672 14358520 ~ 14361647 (-)
rx1 LOC108270609 other upstream 1361878 14408726 ~ 14415069 (-)
zfr2 zfr2,LOC108271074,LOC107742797,LOC108430234 other upstream 1390512 14437360 ~ 14460337 (-)

Expression


Co-expression Network