RNA id: XM_026930681.2


Basic Information

Item Value
RNA id XM_026930681.2
length 3744
RNA type mRNA
GC content 0.44
exon number 10
gene id lpl
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 13037990 ~ 13046848 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTATTTCTAGTGGAAGTGCTGAAAGCGCGCAGGACATCACGCTCAGTACTCTCACCCGGACTAAACCAAACTTTATTctgcaattattattaaaaaaaaaaccgagTAAATATTTAGCACTTGTCGAAGAGAATATGGGAAGAGAAAACCTTGTTCTGCTCATCATCTGGATGTATTTTTTGAATCTTTCTTCCAGTTTTTCAACCACATTTGCTCCACCAGTGGAACCAAGCGCATTCATAGGCAACACCACAACCAACTCTACAGACTGGATGGTGGACTTCAGTGACATTGAGTCCAAATTTGCTCTGAGAACGATTGAGGAACCGGAGGATGATATATGCTACATCGTTCCTGGCCAACGGGACAGCATTAAAGAGTGCAATTTCAATCCAGACACCAAGACTTTTATAGTCATTCATGGCTGGACGGTCACTGGAATGTATGAGAGTTGGGTTTCCAAACTGGTGACAGCGCTGTACGAACGCGAGCCAGTGGCCAACGTCATCGTGGTGGACTGGCTGGTCCGGGCACAACAACATTACCCAACCTCAGCCGCCTACACCAAGCTTGTGGGCCGCGACGTGGCCAAGTTTGTCAACTGGCTACAGGCTGAGCTGGAGTATCCATGGGAGAAGCTTCACCTCCTGGGCTACAGCTTGGGTGCTCATGTAGCCGGCATCGCAGGACTCCTCACAAGGAACAAAGTCAGCAGGATCACAGGCATGGATCCAGCTGGCCCAAGCTTTGAGTATGCTGATGCCCAGAGCACACTGTCCCCTGATGATGCCCAGTTTGTTGACGTGCTCCACACCAACACACGTGGCTCTCCGGACCGCAGCATCGGCATCCAGAGGCCCTTGGGCCATGTGGACATCTACCCCAATGGGGGAACGTTCCAGCCTGGATGTAATCTGCAGAACACAATGATGATGGTGGCTACCACAGGGTTGAGAAACATGGACCAGATTGTGAAATGTTCCCATGAGCGCTCCATCCACCTCTTCATCGACTCCCTGGTCAACATGAAGCAGCAAAGCATGGCGTACCGCTGCAGTTCCAAGGAGACCTTCAACAAGGGTGTGTGCCTGAGCTGCCGCAAGAACCGCTGCAACAAGGCGGGCTACGAGGTCAACAAGGTGCGCAGCCGCCGGAGCAGCAAGATGTACATGATGACCAGAGAAATGATGCCGTACAAAGTTTTTCACTACCAAGTTAAAGTCCATTTCTTCAGCAAGAGCAAGATAAGCTATACAGATCAGCCCGTGAAGATTTCCCTGTATGGTTACTCTGGAGAGAAGGAGAACATCCCCTACATTATACCTGCTTTGAAAACCAACATCACCATCTCCTTCTTACTCACCACGGATGTGGACATCGGCGAGCTGCTGATGgtgaagctgctctgggagAAGGACACCATCCTCAGCTGGCCCTGGTGGAACCCCGACACTTTCCACATTCGCAAGCTGCGCATCAAATGTGGGGAAACACAGTCCAGAGTGATCTTCATCGCCAAGGAAGGTGAGTTCTCCTACCTTGCTCGTGGAGGGGAAGCTGCTGTGTTTGTGAAAGACAAAGAAGCTCAGTCAAGCCGCAAAAATGAAAGATTGCACAAGTTGAAGATGCATGGCAGCTCATTCAAAAATACTGCCTTAGATGCTTAGAGATGCTCTCACACTTCCACCATTTTGCCAGAGGAACCAGCTGAAACTGGACTGGGAAGGAGACGGTGCAGTTTCTGTACATTCTGATCCGAGCAAGTTGCAGAATAGTAGCAATTGTGTGACCTTCACCCATAAGCACATCCTGTAAGGAACTTTTACTTGTGATAACCTTTAACTGCTGagcagtttaaataaaaaagcctaACTTCTGATTACCGCTCAGTATTATCGATTAGCCAGACTTGATCTGAGGTCACTGGAGCTCAGAGTAGAGCCAGAACCTGATGTGACTGGAGCCTGACCACTTCTCATTGGCTGTAACTAGGCATGTGCCGATGATAAAATCGGACCATTCAAAAGACATCATGACTGAAATACTGCTGAGGTTTGTTTATGGTTGAAAAAGCTGACCAATGAGACCAGCAATGATTTTATGATAATAGTGATAGGCAATAATGGTAGGAAAATCGTGCACATGCCTAGATgctaaatatttctttaaatgaaaGATAAGAAGTCTTTTATTGTTATGCAATATATATGTGCGTATATGTAAGTAAACCGTTACActgttataatgtgtgtattgaaTTTCTGTCAGCTTTGGTCAAACCGAAGTGAAAGTAATAAACAATGTAGGGCAAAGTGGGCGTCACGTGGGGCTGCACTCAGGTCACAGGGGCTTCGTATgcctgactgactgactcacttaGTCACTGACTGACGGATTGACTcattgactgactgattgatttgctgactgactgattgattcaCCAGTCACTGACTGAATGACTCACTGACTAATTGATTTGctaactgactgactcactgagttactgactgaataactcactgactgactgattgatttactgactgattgatttgctgactgactgattgactcACTGAGTTATTGACTGAATAACTCACTGACTGACAGATTGATTCATTGAGCCACAGACTGATTGACTCAATGAGTCACTGACTGATGGACTCACTGAGTCACTGACTAACTCACTGACTAGCTCTGAAGGTGAAACCACCTGATGAAGGGAATGATTTTTGTGTCCCTGTTTACCTGCCTACATAGCAATCAAACACTGAGTGTCCTTGATCACAGTGAAGTGGCTGGTGATGCCATGTTGAGGTAGTTTATAATGACGTGATGCTAGGCTTTGTGTATAAGATGTCATGGTGAAATTTTATAGAGTATAAAAGGTGCACAACACTCTAAAACTCTGCGAAACACTGTGAAGCTGCCTAAAACCTATATACTACCTATCAGATACACTTAATGCTGTAGATCCGATCTACATGCAGGAATTTAGCAGTCCACTTTTTACCATAGAATTTAAGTAGGCATAGTATGTTGACCACTTGCTAGCAGGGGACCAAATACTCTCTTAGCTGAATCTATATACAGAAATGATCagtgtaaatatgtttaattgttCTATATTTGGAAATGTGTAAGTTTAAgttgtttttgtgtctgtgtttgggtTACTGTGTTTGGCACAGGTCACTTTATAGGCTTGGATTAGTTTCCTGTTCAATCTATTCATCACTTAATGTCACAATCAGATGTTTTCATTCTTTTGGTCAATTGCTCACAATTAAATCAAAAGATCACTCAAGACCTAAAACATATTTGTCTAACGTTTAGGTTTTGATTGGTTTTCAGTATTTAATCATACACTTAATTTTGCCTTATAATGTGCTCTTCTGCCAGATTGTTGTGAATTAAAGGAATTCTGAACATGCTTCTGCACACTTCCTGATTGTGGCTTAAGTAGGTAAACTACACACAATTCATCAGCTGTGGTGTTATAGTTCCTACCATGCACCAGAAACCTAGCCCTGAGGAAATCAGAATTAAATAGGCCTTATGAAAATTCCATCAGGATGAATTTCCCCCATAAGACCCATAAAGACAACaggattatttattaattgtatatatttgtacattAGCCTTGTATAAACAATGTATACCCTTGGGATTATTCATCGTATTAATATGCAATGCACTGCataagtatattttaataaagagtATGTTGCATTATAA

Function

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0005576 extracellular region cellular_component
GO:0004465 lipoprotein lipase activity molecular_function

KEGG:

id description
K01059 LPL; lipoprotein lipase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU213798 lncRNA downstream 50467 12986787 ~ 12987523 (-) True G180627
TU213802 lncRNA downstream 53877 12982012 ~ 12984113 (-) True G180629
TU213797 lncRNA downstream 57295 12976587 ~ 12980695 (-) True G180626
TU213731 lncRNA downstream 156079 12881655 ~ 12881911 (-) True G180574
TU213696 lncRNA downstream 282268 12752106 ~ 12755722 (-) False rc3h1a
TU213972 lncRNA upstream 23089 13069936 ~ 13127438 (-) True G180783
TU213983 lncRNA upstream 47316 13094163 ~ 13176020 (-) True G180793
TU214014 lncRNA upstream 204571 13251418 ~ 13272942 (-) True G180819
TU214092 lncRNA upstream 379884 13426731 ~ 13430173 (-) True G180877
TU214294 lncRNA upstream 463604 13510451 ~ 13521721 (-) True G181047
XM_026930799.2 mRNA downstream 5446 13024401 ~ 13032544 (-) True LOC113536692
XM_026930882.2 mRNA downstream 91170 12943426 ~ 12946820 (-) True fam32a
XM_026930825.2 mRNA downstream 188344 12846851 ~ 12849646 (-) True klf2a
XM_026930295.2 mRNA downstream 235303 12783319 ~ 12802687 (-) True stil
XM_034308776.1 mRNA downstream 261747 12752078 ~ 12776243 (-) False rc3h1a
XM_026930600.2 mRNA upstream 64965 13111812 ~ 13156018 (-) True gpc1a
XM_026930328.2 mRNA upstream 111540 13158387 ~ 13231123 (-) True gpc5b
XM_034308427.1 mRNA upstream 125882 13172729 ~ 13231123 (-) False gpc5b
XM_034308980.1 mRNA upstream 192876 13239723 ~ 13243200 (-) True rpp21
XM_026924707.2 mRNA upstream 239785 13286632 ~ 13302366 (-) True pak2b
TU213621 other downstream 317514 12717361 ~ 12720476 (-) True G180485
TU212758 other downstream 1534028 11496074 ~ 11503962 (-) False LOC117598430
TU212749 other downstream 1622550 11409092 ~ 11415440 (-) False G179803
TU212647 other downstream 1791685 11243975 ~ 11246305 (-) False nppc
TU211855 other downstream 3222765 9813892 ~ 9815225 (-) True G179035
trnam-cau_27 other upstream 189556 13236403 ~ 13236475 (-) True trnam-cau_27
TU214009 other upstream 192902 13239749 ~ 13243162 (-) False rpp21
TU214564 other upstream 1314089 14360936 ~ 14361647 (-) False LOC113527598
XR_004579086.1 other upstream 1361879 14408726 ~ 14415069 (-) False rx1
XR_003402957.2 other upstream 1393007 14439854 ~ 14460337 (-) False zfr2

Expression Profile