RNA id: XM_026930600.2


Basic Information

Item Value
RNA id XM_026930600.2
length 2593
RNA type mRNA
GC content 0.51
exon number 9
gene id gpc1a
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 13111812 ~ 13156018 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGTAGAAAGAGACGCGGCTAAAACGCACGGATCGGTTTGGGACCACGGCAGTGCCTTCTGGACCTCTCACCGGATATCTCGCctgcttttttccttccttaccTTTtatcttgtttcatggacacTTCTGAAAAGACATGAGCGCGAGCTATGGCAACCCGCCGGACTGATTAAAGAATTTAAGGGACGGATCTTTTTTACTTCGTTTCGGACGGACAGAATCACCGGATGCTTCCTCGCTCTCCTTTTCTTTAAGATCGCAtctgacagacagaaagacagacaggcagacagacagtgtCCCTGGATGAGAAATGGCTCTCGCGCTCGCCATCCTCCCGGTTTTCTGCGTGCTCGCGGCGTGTGCGCGCGCGGACGGCAACAACGCGGGCGGCAAAGCGCGCAGCTGCTCGGACGCGCGGCGCTTCTACAGCGGTAAAGGCTTCACGCTTAACGGAGTCCCGCACGCAGAGATATCGGGTGAGCATCTGCGAGTGTGTCCTCAAGGCTACACCTGTTGCACAAGCGCTATGGAGGAGACGCTGTCCAACCTAAGCCGCAGAGAATTCGAGGGTTTGGTGAGAGAGGCAGGACGCTCCATTCAGGCTTCCCTGAATGCCCAGTACAGGAGCTTTGACACGTACTTTTTGGAACTCCTGGACAGGTCTGAGAGCTGGCTGGAGGAATCGTTTGTTAAGGCTCTGGGATCTCTATATCCACCCAATGCTGGGGTTTTCCGTGACCTCTACGCTGATCTGCGAAGATATTACCGCGGCACATCACTGAATCTAGAGGAGGCGCTGGATGAGTTCTGGATGCGCCTGCTGGAGCGCATGCTGAAAACCACCGACCCGTCCCTTGCCTCTGATGATTTCCTTGAGTGCGCTTCCAAACAGACGGAGACCCTGCGTCCATTTGGGGACGCTCCACGAGAGCTCAGGGTCCGACTGGTGCGTGTGTTGGTCGCTGCTCGTGCCTTCGTGCAGGGTCTCAACGTGGCTGGAGAGGTTGTGAGGAAGGTTTCTCAGgttcCTCTGAGCCCTGAGTGTAACCGTGCCATCATGAAGCTGGTGTACTGCCCGCATTGCCGCGGTCTCGGCTCGGCCAAACCCTGTGGAAACTACTGCAAGAACGTCATGAAGGGCTGCCTGGCTAATCAGGCTGACCTGGATGCGGAATGGCAGAATCTCAtcgATACTATGCTGCAGGTAGCTGCTAGCTTCAGCTCTGAGCCCAGCATGGACGTGGTGCTGCACTCCATCCCTGTACGCATCTCCGAGGCTGTGCTGCACATGCAGGAGGACATGGTGCTTTACACTGTCAAGattcTCCAGGCATGTGGAGGGCGTGGAGAGGAAGGCACCCAGAGCTCGGTGTCTGATGAGGCCAAAAAGAAGGGAAAGAGTGTAACAGCACTGGAGTACAAAGCCAGCCCCACAGCAGCTGTCAGACTGgaagtgcagATCTCTGATGTATCTAGTAAACTGAAGGAGATGCAGCTGTACTGGATTCAGCTCCCCTCTGCTCTGTGTGACAGTAAAGCAGCGTCTGGTTCCTCCAGCGATGACGACTGTTGGAACGGCGTGGCCAAAGCACGGTACCTCCCCCAGCTCATGGGAGATGGTTTGGCCAATCAGGTCAATAATCCTGAGGTGGACATTGACATCACCAAGCCTGACATGACGATACGGCAGCAGATCATGCAGCTCAAGATCATTTCTAATCGCCTGAAAAACGCCCTTGATGGCAACGATGTGGATTTTCAGGACACGAGTGATGACATCAGTGGTTCAGGCAGTGGCATGTGCAGTGAGCAGCTCTGTGTCCGAAGCGGGCCACCGGTCTTTGGGCCTAAACTGGACAGACCCAAATTAGACGCCTACAGCCCAGAGGACAAAGAAGTGAAAGGTGGCGGAAGTCCGAATGTACCATCTGCCTTCCTAATTGTGGTGCTGGTCGTGATCAATCTGCTGTTCAGACGGTAATACAAACGCAGTCCTGCCACCAAACTGGACCTGGGAGGTTCGGGGGGTTAGTAGGGAAGTGAAGAAAAACTGACAAGTTAGTGAGCTGACGAGATTGCTAAATGAAAAATCATGTGGCTGATTGGACCTTTCATCTCTGAGAGACTGAGGGAATGATGTCTTTTTTGTAATGTATGTAAGTTTTACAGAcgatttttctttctctgtaccTTTGAATGTCAAAAAAGTAACAACTTCTTGGAGGACGTGTTTTTTTGTAATGGTGCACACGACTCAAAAATCTCTTAAGCAAGCTGTCCCACCAGTGAGTCTgtgcttcattttattttacaatgcTAATTTATAAACAACTTCCTTTTTCCAGcacttcacaaataaaaaaaaagaggtaaaaaaaGAAGATCTACATGTTTGGATGCATGGACATGCATTTAAGGAAAGATCAAACAGTCCCAGAATATGAAATGATTAGGTAAGATAAAATCAACTAAATTCAGTTGTCCTGCTTCATTGGATCAGACTGTCATTGGATCCTGTACTGTCATTCTACTTTAAGCTCCTGTTGCTGGTTGACgtgaattaaaaacaataaatatctgTCAACGTGG

Function

GO:

id name namespace
GO:0035622 intrahepatic bile duct development biological_process
GO:0061009 common bile duct development biological_process
GO:0031225 anchored component of membrane cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005615 extracellular space cellular_component
GO:0043395 heparan sulfate proteoglycan binding molecular_function

KEGG:

id description
K08107 GPC1; glypican 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU213800 lncRNA downstream 63112 12989773 ~ 13048700 (-) True G180628
TU213798 lncRNA downstream 124289 12986787 ~ 12987523 (-) True G180627
TU213802 lncRNA downstream 127699 12982012 ~ 12984113 (-) True G180629
TU213797 lncRNA downstream 131117 12976587 ~ 12980695 (-) True G180626
TU213731 lncRNA downstream 229901 12881655 ~ 12881911 (-) True G180574
TU214014 lncRNA upstream 95400 13251418 ~ 13272942 (-) True G180819
TU214092 lncRNA upstream 270713 13426731 ~ 13430173 (-) True G180877
TU214294 lncRNA upstream 354433 13510451 ~ 13521721 (-) True G181047
TU214285 lncRNA upstream 390938 13546956 ~ 13570169 (-) False ptprsa
TU214309 lncRNA upstream 562305 13718323 ~ 13719757 (-) True G181062
XM_026930682.2 mRNA downstream 64964 13037990 ~ 13046848 (-) False lpl
XM_034308865.1 mRNA downstream 64964 13041002 ~ 13046848 (-) False lpl
XM_026930681.2 mRNA downstream 64965 13037990 ~ 13046847 (-) True lpl
XM_026930799.2 mRNA downstream 79268 13024401 ~ 13032544 (-) True LOC113536692
XM_026930882.2 mRNA downstream 164992 12943426 ~ 12946820 (-) True fam32a
XM_026930328.2 mRNA upstream 2369 13158387 ~ 13231123 (-) True gpc5b
XM_034308427.1 mRNA upstream 16711 13172729 ~ 13231123 (-) False gpc5b
XM_034308980.1 mRNA upstream 83705 13239723 ~ 13243200 (-) True rpp21
XM_026924707.2 mRNA upstream 130614 13286632 ~ 13302366 (-) True pak2b
XM_026947751.2 mRNA upstream 147483 13303501 ~ 13308317 (-) True pigx
TU213621 other downstream 391336 12717361 ~ 12720476 (-) True G180485
TU212758 other downstream 1607850 11496074 ~ 11503962 (-) False LOC117598430
TU212749 other downstream 1696372 11409092 ~ 11415440 (-) False G179803
TU212647 other downstream 1865507 11243975 ~ 11246305 (-) False nppc
TU211855 other downstream 3296587 9813892 ~ 9815225 (-) True G179035
trnam-cau_27 other upstream 80385 13236403 ~ 13236475 (-) True trnam-cau_27
TU214009 other upstream 83731 13239749 ~ 13243162 (-) False rpp21
TU214564 other upstream 1204918 14360936 ~ 14361647 (-) False LOC113527598
XR_004579086.1 other upstream 1252708 14408726 ~ 14415069 (-) False rx1
XR_003402957.2 other upstream 1283836 14439854 ~ 14460337 (-) False zfr2

Expression Profile