RNA id: TU214285


Basic Information

Item Value
RNA id TU214285
length 3248
lncRNA type sense_over
GC content 0.38
exon number 2
gene id ptprsa
representative False

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 13546914 ~ 13783127 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

caaaataaataaaaaaaaaaaaaaaagaaataaaccctgttgtgaaataaaaacaaaactacagtGTGCATTTGGCAACGGATTCCAGAACCATCATCAAAAAAGTGCGATCCTAATTAGACAGAGCCCATGCCGAGGCAGATGGAAGGATCCGCTCAGAAACCAACTCCCTGTACGTCCTCAATCATGAGACAGAACCAAAAGTATTGGCTCAGGCCGCGGGGTGGGAATGATCTATAAGTCGGACCGCTTACTTTACCTCAAGTGTTCTGATATGGAGAATATTATTAATCTATCTGTGGAAGTATATCTCCAAACCAATCCTGTAAagatacaacaaaaaaaatcagcgaGTGAAGGAGGAGCTAAAGTTCTGCACACGCCCACACGTGTGTGTTTCAGCGAATGATCGAAGTGGAGGTGATCACACTGAGACTGATTGGTGAGGTGATTGAGCTGAGATCcttcagtgtttacagtgggCACTTGCCAATTCCGGATGTTTCTTCACATGGTGATGGCAGCAGAAGGTGTTTCAGGGGCTGTGTTAGTGAAGTAGGCAGGATTTTTATCTACAGTCTCTACAATCTCTACAGTCTCATCCATTTCAACACATCAAGGCAACTCGTGTTCATCTTATAGAAAGCGCTAATTCTCCAGAAGTCGTTTCGGTGCTTTTTGGGACAAGCTAGCCAATATCTTCACAACATGCCAATGTAGCTTCGTCTTGAAACCGTATGGAGGCGACTGGAGCGTGACCCTGACAGTATCTCCAGCCAGGAAAGTGAAGACCAAACGATTCTCCACTGAGTTTTCTCTGGATTGTAGTATACGTTATCTTTGACTGGTTTTCCCACTGCCATGTGCCGTGTGGTTCAGAACCTGGTAGACATggaccaccaccaccacacgtGGAATCATGGGATTGGTACTCCAATGACCAACATTCACCACGATTCATTACCTTGAATCTGGAAAGGCTTTTCCTTAGACGAGAAAGACACACTCTAGTCTTGTGTGACCAACCCAACAACATGAACAACAATGAAAGATCTCAGACGTTCCTGACAGCAGTCTACACCACGACGACTGCTCTCAGGGCTCCCTGAACACTTTTAAGGCCCGTCATTTCATCACGGCTTCACTGACCAATCGCGATAAATCTGCATACGTAAACAACATCGACAAACAGAAAAACGGAGGTACGACTTAACGTGCGCATCTCAGAACTTTTAATTAAGACTtaaacatatatgtgtgtgacagGAAGAGAGGAAACTTCTCTTCCGTCACTCTCTGCATAGGtcaaaatggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtacgtacgtACTGGAGAATGCTTGAACGGCGGAGCTTTCAGATTAGTGTGCAACGGAAGATACTGATTGCGCTGTGGAAGGAGCCGTGTGTAGTCTTTTCTTATTTCCAAAAAAGCCTTATCGTTGTTGTAACATTATACAAAATGACattgttgtattattattacaattaacataatttcactttaattttatctgtttagttTTGTAACATACAGATACTGTACTCATTTttaggaggagaaaaagagctGGTTTTGTTCATATTATGTTAAAAGACATTCTATTTTTTCACTATAGAATTGTGGaatgtggttgtgtgtgtatatttatgcacacacactaacatacacagtatatttaaatgcaaaatacaaagATGTATCCAAATCTTAGTATGGTTAgtatttttcctgtatttttatttcactcatgaacatgtattcatttgtatgaagttttttttttttttatcatgattTGGAGAAATGCAGCTTGGCCTCGTTCTTTTGCTCAGAAAGGTATGAACTCGTAGATTTGACCTTTAttcttattatcattattagtagtgtgtagtatgaggtaaaagtattaaattttatttttttttgtttttaaaaaaggagtAGGATTTCTTAACATTGACTTGaacattaactttttatttctacatttttaatattcatgaaCTATACCCAATGTTTCACCTCTCTtgtgaaaatttcatttttacaatttttttattttacattatcgttgtttttttacttttgaaatCACAAGACTGATCATCGGCTTGTTATGTATGGATCCTGAATATgacatgtaaataaacaaatctagattatatgtatttgtataatttgacccacatgttttctgtctgaataattatgaattttaaaatgaaaaaaaaaacaagctgtcCAGCTTTCTCTGAGGAACTTGGTGTTGTAGTAACAACCTTCTCCACCTCTGATCCCTTcactttcactcttttttttatatttaaaatatttttcttttttccagacGAGCTCTGACTGTCCACCCCAGTGAGCTCAGCAGTCAtgaggtttctttttttcctcgtATGTAACTGCTTGAAGCTGATTCTACATTGCATTAACAGTTTTCTGTTCCcctttgaataaaataaattatgtttggATAATGAACCTGGGAAGGGCTCGTGTGCTTGGTGCATACACTCGAACATGACATAATGGAGTGACTGCACAAATTCGCCTTGAACGAATGTGAATTCACTGGTGTGTGGAATCACATCACAGCCAGTGCGATGGGTTTAGTGGGACTCGTCTCTCAGCACTGCCCATTTACTTCATTCTTCCATTTTAACCACTGCAGGCTGAATTACAGAGCTTTCAGTTTGTGCACGTGCATactattatgtttttattttttattctttttcccGGAAATCATTCTTTCTTGCTAAAGTTTGGAAGGAGAGAGAATTCTGGAATCTGGAAATTCCAGCGCTGCCTTGGGAACTGGAGTTCGACTTGTTTCTCCACAAGATGCTCTTCTATACGAACTGATACACTTATCTCTGGAGCTCCTAATAAAAATGGCGGAAATCTTGGACGCTTAAGGAATGTTAGGACTTTTTGACCTAGTGTTCGGATCCCTGATCTCTGATGACATCGGCCAAACGTCTGACATGAGAAGTCAGATTGATTAGGGAAAATACAGACTCCGACTCCACTAAACATATAAAAGCGAGCgtattgacaaaaaaaaagaaacaaaaaaaagaagaaaagccaaaattcaaaagtgaaaatgtttgtCTTTGTACGAAAGCCAAGTGATACTGCTTTCAAACTGTTACTTCTAACGGAAACAATAATTGGTTTAAAAACCACTGTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU214294 lncRNA downstream 25235 13510451 ~ 13521721 (-) True G181047
TU214092 lncRNA downstream 116783 13426731 ~ 13430173 (-) True G180877
TU214014 lncRNA downstream 274014 13251418 ~ 13272942 (-) True G180819
TU213983 lncRNA downstream 370936 13094163 ~ 13176020 (-) True G180793
TU213972 lncRNA downstream 419518 13069936 ~ 13127438 (-) True G180783
TU214309 lncRNA upstream 148154 13718323 ~ 13719757 (-) True G181062
TU214377 lncRNA upstream 485239 14055408 ~ 14055615 (-) True G181128
TU214468 lncRNA upstream 510330 14080499 ~ 14124923 (-) True G181197
TU214476 lncRNA upstream 566285 14136454 ~ 14136955 (-) True G181205
TU214483 lncRNA upstream 586334 14156503 ~ 14203731 (-) True G181207
XM_026945973.2 mRNA downstream 19192 13516683 ~ 13527764 (-) True tbxa2r
XM_026945905.2 mRNA downstream 19206 13516683 ~ 13527750 (-) False tbxa2r
XM_026946043.2 mRNA downstream 19206 13517649 ~ 13527750 (-) False tbxa2r
XM_026926763.2 mRNA downstream 55782 13470587 ~ 13491174 (-) False si:zfos-943e10.1
XM_034308778.1 mRNA downstream 62955 13470587 ~ 13484001 (-) False si:zfos-943e10.1
XM_034308944.1 mRNA upstream 527485 14097654 ~ 14160605 (-) False kdm4b
XM_034308943.1 mRNA upstream 527485 14097654 ~ 14160605 (-) True kdm4b
XM_034308945.1 mRNA upstream 594997 14165166 ~ 14179580 (-) True uhrf1
XM_026913208.2 mRNA upstream 671134 14241303 ~ 14317837 (-) True fbn2b
XM_026915563.2 mRNA upstream 788351 14358520 ~ 14361382 (-) True LOC113527598
TU214009 other downstream 303794 13239749 ~ 13243162 (-) False rpp21
trnam-cau_27 other downstream 310481 13236403 ~ 13236475 (-) True trnam-cau_27
TU213621 other downstream 826480 12717361 ~ 12720476 (-) True G180485
TU212758 other downstream 2042994 11496074 ~ 11503962 (-) False LOC117598430
TU212749 other downstream 2131516 11409092 ~ 11415440 (-) False G179803
TU214564 other upstream 790767 14360936 ~ 14361647 (-) False LOC113527598
XR_004579086.1 other upstream 838557 14408726 ~ 14415069 (-) False rx1
XR_003402957.2 other upstream 869685 14439854 ~ 14460337 (-) False zfr2
XR_004579061.1 other upstream 982986 14553155 ~ 14579747 (-) False lama3
TU215666 other upstream 2120605 15690774 ~ 15692350 (-) True G182210

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00040021 True 592 processed_transcript 0.32 2 NC_007133.7 3384732 ~ 3388004 (+)
eurasian perch (Perca fluviatilis) TU129675 True 2182 lncRNA 0.40 2 NC_053120.1 17177287 ~ 17183618 (-)