RNA id: TU129675


Basic Information

Item Value
RNA id TU129675
length 2182
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G96140
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 17177287 ~ 17183618 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cacatacacatatatatacacacacacacacacacatatatgcacaaatacacagacatgttATACTTAACATTTCTACAGTGAAAAAATAGAATGTCTTTTAACGTAATATGAACAAATAAGCATTTCTCTTTTCCtgctaatttaaaaaatgtgatacAACATCTCTGTTAAAAAACTAaaccaaaactaaaataaaaagtaaactatGTAATGTAAAATAAGTCCTCATAATACAACAGTAATGTTTTCATAATGTTACAATAACAATAAGGCTTTTTTGGAAATAAGAAAAGATTACacacagttctgtcaatcactCTGGTTTTTATGCACACCCTTTGGAAACCTCCACAGAATCTGCACACAAATCTGTACCAAAGGACTGATCTCAAGATTTCAAAAGCTTGATTTTTCAGACACATATACTTTAGTGCGTCAAATCTGACCTGCAGTTGTTTTGGGGGTATTTGTTTcaagttttgtttcttttttccttaGGCATGTGCAAGTAACTTGTACCGAAGAATTTCATTATCACATCATGGCATTGatatccaacatggctgcctgGTCTGGCGGTGTCACCCATGGTGACATCATCTCTAAAacggaggggaaaaaaacccaAAGCAACTAGCCTACTTTGTTTATCCACCTCTtaccaaacacacatacagttgaACTAAAGGCCAATTTTTCCAACCACATAAACATACAGCTTTGTAACTGCAACAGGCCTCAGCCACTCTTGAGTGTCTTATACAATAAAATAGATGATTATAGAAGAGGctggaaaaaaagagatgtaAAAAAGACCGGTGGACGATGTTGTCATGTGAATGCGCTTTCAGTCATGCCTGCCTTGGCGCGAGTGGATAGCAGAGCTGGCATCTTTTGTTCGTCAGTTTCCTCTCCCATAACAGTCACACACTTACAGCATACACGAGATAAGCAGCATGTTTGGTTTTgacgaaaaaaagaaaagaaaaaaaaaaagagataattCCTTATAAGACAAGTCTGAAACAATGATGATGAACGTTGGTCACTGTACACAAAGAAAGCTCCGACTCTGCGGCAATCCTTGCATGGTTGTTCCGTTTGTTCCAAAGCTTCTCGCCCACCAGGTTTATCTCTTGTTCAAAATGGTGGATGTTAACACCGAAGCCCCACGATGCAATGGTTCCAAATAGAggagtgattgtaaaaaacatGGGACACGGTTGCCATTTCTCCCACCTTGACCACCCGCAGCTTCTTGCAACAGCCAAGGTTTTCCTCCGATTTCTCTGGTGACTGAGACACGAGCCTCCTGGGGCACTTCTTAAATACACTGTGGTACTTTTCAACATCACCTGGCTTGGGATACTGATTTTACACAAGTTCACAATTCATGAAACTAAATGTGTTGCTGCTTTCTTCCCCACAACCACTGACAATGCCTTGTCTAAGCTCTTAGCGCTTGAGAACAGGCAGTTGTGTGATGTGTACTTTAGTAGTTGAGTGTTCTTCCGCACAAATTAGGCATATCATTAGTGggacagtgtaaaaaaaaacaactcaaggTTTACTTGATGCTAGTGTTCTCGTGCTAGTTatgtttccactttttttttttggatttacCAGAGGTTGGGGAAAACCATGTGTGTTCACACAGGCAACCACAGTTTGGTCATTTCTCTGGATATCACTCACCAAATTTATTGATAGAAATACTTgaaccaccccccacccccccccgtTTACACCCAggcatataaaacaaaaacaaaaggaagtCACCCCGTCTCGGCTACATCCATCTGCCTCTcattgatttttgttgttgccttCTCCTTCATTAACTGTTGCTTGTTACCGTTGTATCACAAAGATATTTTTGAGAAGAGAAATGTCCACGAATGTTTACAATGTCCTCCACATTGAAACACTTGAGGTAAGGTAAGCAGTCTGACACTTTGATCGATTCCCGCCCCACAGCCTGAGCCACAGCGTCTGGTTCCTCTGCCGatgaggattttctttttctttgatgATGGGCAATTTTCCTCGTTTCCTCACGAAGGGTCTCTTGGTCGAATTGGAATTTTTCTCAACAAGTTGGTTGGGCGTTGTTTTAAAATCTACAGTAGGATCCTGTTTGGTGTGTCTGAATTAGTGATGGTGTTATTGTCGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129656 lncRNA downstream 50539 17126352 ~ 17126748 (-) True G96127
XR_005640302.1 lncRNA downstream 122051 17052284 ~ 17055236 (-) True LOC120565886
TU129605 lncRNA downstream 277423 16899435 ~ 16899864 (-) True G96098
TU129595 lncRNA downstream 299206 16877859 ~ 16878081 (-) True G96089
TU129580 lncRNA downstream 612390 16563336 ~ 16564897 (-) True G96074
TU129677 lncRNA upstream 5862 17189480 ~ 17189720 (-) True G96142
TU129678 lncRNA upstream 12311 17195929 ~ 17196165 (-) True G96143
TU129691 lncRNA upstream 52722 17236340 ~ 17249523 (-) True G96151
TU129775 lncRNA upstream 427003 17610621 ~ 17610992 (-) True G96216
TU129813 lncRNA upstream 501976 17685594 ~ 17701131 (-) True G96247
XM_039810976.1 mRNA downstream 922850 16226826 ~ 16254437 (-) True jak3
XM_039810299.1 mRNA downstream 1051568 16117372 ~ 16125719 (-) True LOC120565011
XM_039812125.1 mRNA downstream 1100603 16070335 ~ 16076684 (-) False klhl26
XM_039812124.1 mRNA downstream 1100603 16070335 ~ 16076684 (-) True klhl26
XM_039810953.1 mRNA downstream 1108911 16054261 ~ 16068376 (-) False crtc1b
XM_039810240.1 mRNA upstream 36896 17220514 ~ 17231048 (-) True gipc3
XM_039810345.1 mRNA upstream 73686 17257304 ~ 17260279 (-) True lim2.2
XM_039810344.1 mRNA upstream 73692 17257310 ~ 17261024 (-) False lim2.2
XM_039811533.1 mRNA upstream 79746 17263364 ~ 17277405 (-) True LOC120565629
XM_039811290.1 mRNA upstream 94586 17278204 ~ 17337273 (-) False camsap2a
TU129083 other downstream 1734048 15438172 ~ 15443239 (-) False LOC120565484
TU129051 other downstream 1794425 15379507 ~ 15382862 (-) True G95680
TU128848 other downstream 2554275 14621288 ~ 14623012 (-) False dda1
XR_005640309.1 other downstream 2933754 14236539 ~ 14243533 (-) True LOC120565956
unassigned_transcript_389 other downstream 3263925 13913281 ~ 13913362 (-) True trnas-aga_8
TU129772 other upstream 371479 17555097 ~ 17555736 (-) True G96213
TU129841 other upstream 682999 17866617 ~ 17875325 (-) True G96267
XR_005640208.1 other upstream 1836360 19019978 ~ 19061893 (-) True psmd1
XR_005640297.1 other upstream 1879257 19062875 ~ 19066644 (-) False LOC120565857
TU130828 other upstream 4049268 21232886 ~ 21241337 (-) True alkal1

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
striped catfish (Pangasianodon hypophthalmus) TU214285 False 3248 lncRNA 0.38 2 NC_047605.1 13546956 ~ 13570169 (-)