RNA id: XM_039810953.1


Basic Information

Item Value
RNA id XM_039810953.1
length 1787
RNA type mRNA
GC content 0.56
exon number 14
gene id crtc1b
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 16048431 ~ 16068376 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAAAGGCCCTAGCGTGGTGTGTAACGTAACATTCCATTGAGAAGAAGAGGGAAAGATGGCGTCCTCTAACAATCCCCGCAAATTTAGCGAGAAAATCGCTTTGCATAATCAGAAACAGGCGGAGGAAACTGCTGCGTTTGAAGAAGTGATGAAAGACCTAAACATCACCAGAGCTGCGCGGTTGCAGTTACAGAAGACCCAGTATTTGCAACTAGGGCAGAATCGTGGACAGTACTATGGAGGCTCACTGCCCAATGTCAATCAGATTGGAAATGGCAACATTGACCTGCCTTTTCAGAACTCGGTACTGGATACCAGCCGGACTACTAGGCACCACGGGTTGGTGGAGCGTGTTTACCGTGACCGGAACCGCATCACGTCTCCTCACCGCCGGCCGCTGTCAGTCGACAAACATGGACGCCAGATTGACAGCTGTCCTTACAGCTCAGTTTACCTCTCACCACCGCCAGACACTAGCTGGAGAAGGACAAATTCGGACTCTGCCTTACACCAGAGCGCCATGAATCCGAAGCCCCAGGAGGTGTTTGCAGGGGGATCACAGGAGCTGCAGCCTAAACGAGTACTGCTGCTAACAGTGCCTGGGATGGAGAATTCAGAGTCAAATGCAGACAAGGATGCGCAGGAACAGTTGTGGGATGGCGAGAAGGATGATTCATCAAAGCCCAACACATGTGATGTCCCGGGAATCAATATATTCCCATCACCAGACCAGGAGTTAAACCCGTCCATGCTCCCAGCTGCACACAACACCGGTGGTTCGCTGCCTGACCTGACAAACATCCAGTTCCCTCCTCCGCTGTCCACCCCGCTGGACCCCGAGGACGCCGTGGCCTTCCCCTCCCTCAGCTCGTCCAACAGCACGGGCAGCCTGACCACCAACCTCACCCACCTGGGCATCAGTGCTGCCAGCCATGGGATCCCCACCTCCTCTCAGCCCACCATGACTGTGACGGCACAGCGCCGGCAACCACCCGTGGTGCCGCTCAGCCTCACCTCTGACCTCCATCTCCAACAGTCCCCACAGCAGCTTTCCCCCACCCTCTCCTCACCCATTAACATCTCGCAGGTCGTGCCAACAGAGTCGTTGACCCTGGAGCAGCAGCTCTCTCAGTTCCCGCTGTTCAACCAGCTGACGGCCCAGGCCCAGGCTCAGCTGCTCAGTGAGctccagaagcagcagcaggtcCTGCCGCAGGGCATCCAGCTCATCACATTGCCAACTCTGGCCTCCCCTGGTACCACTACAAGCAGCCCCTCCCCAGACAGCCAGAGCCAGACCACCGCCAGCATCAGTATCGGCTCGTACCGCAATCAGACTGGCTCACCAGCCACTCAGTCACCAACCTCCCCAGGCTCCAATCAAGGCTTCTCCCCCGGCGGCTCGCCTCAACACATTCCCTTGGTGGGCAGTATATTTGGCGACTCCTTCTATGATCAGCAGTTGGCATTAAGGCAGACCAATGCCCTTTCTCATCAGCTGGAGCAGTTCAACATGATCGAGAACCCCATCAGCTCCACCAGCCTTTTCAACCAGTGCTCCACCCTTAACTACACACAAGCAGCCATGATGGGCCTCACCGGGAGCAGCCTACAGGACTCGCAGCAACTCGGCTACAGTAGCCATGGCAACATCCCCAACATCATCTTAACAGATGTCAGTAGCTACTTCTTTCTCTGATGTCCCGTGTCTCAGTCACAGGGGAGTCTCCGCCGAGCCTCTCCAAAGAGCTGACCAACTCTCTGGCGGGTGTTGGTGATGTCAGCTT

Function

GO:

id name namespace
GO:0051289 protein homotetramerization biological_process
GO:0032793 positive regulation of CREB transcription factor activity biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008140 cAMP response element binding protein binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129367 lncRNA downstream 32513 16021476 ~ 16021748 (-) True G95918
TU129365 lncRNA downstream 34083 16018078 ~ 16020178 (-) False smim7
TU129234 lncRNA downstream 276109 15775222 ~ 15778152 (-) True G95811
TU129192 lncRNA downstream 334755 15719290 ~ 15719506 (-) True G95788
TU129190 lncRNA downstream 337297 15716752 ~ 15716964 (-) True G95786
TU129445 lncRNA upstream 102153 16170529 ~ 16173571 (-) True G95968
TU129461 lncRNA upstream 127339 16195715 ~ 16197640 (-) True G95979
TU129463 lncRNA upstream 132954 16201330 ~ 16204739 (-) True G95980
TU129524 lncRNA upstream 219360 16287736 ~ 16288881 (-) True G96029
TU129529 lncRNA upstream 231698 16300074 ~ 16300279 (-) True G96033
XM_039812471.1 mRNA downstream 34043 16018032 ~ 16020218 (-) True smim7
XM_039812133.1 mRNA downstream 36685 16011715 ~ 16017576 (-) False LOC120565970
XM_039812132.1 mRNA downstream 36685 16011715 ~ 16017576 (-) True LOC120565970
XM_039811039.1 mRNA downstream 45062 15995825 ~ 16009199 (-) True slc35e1
XM_039811927.1 mRNA downstream 72789 15961190 ~ 15981472 (-) True LOC120565860
XM_039812125.1 mRNA upstream 1959 16070335 ~ 16076684 (-) False klhl26
XM_039812124.1 mRNA upstream 1959 16070335 ~ 16076684 (-) True klhl26
XM_039810299.1 mRNA upstream 48996 16117372 ~ 16125719 (-) True LOC120565011
XM_039810976.1 mRNA upstream 158450 16226826 ~ 16254437 (-) True jak3
XM_039810240.1 mRNA upstream 1152138 17220514 ~ 17231048 (-) True gipc3
TU129083 other downstream 611022 15438172 ~ 15443239 (-) False LOC120565484
TU129051 other downstream 671399 15379507 ~ 15382862 (-) True G95680
TU128848 other downstream 1431249 14621288 ~ 14623012 (-) False dda1
XR_005640309.1 other downstream 1810728 14236539 ~ 14243533 (-) True LOC120565956
unassigned_transcript_389 other downstream 2140899 13913281 ~ 13913362 (-) True trnas-aga_8
TU129772 other upstream 1486721 17555097 ~ 17555736 (-) True G96213
TU129841 other upstream 1798241 17866617 ~ 17875325 (-) True G96267
XR_005640208.1 other upstream 2951602 19019978 ~ 19061893 (-) True psmd1
XR_005640297.1 other upstream 2994499 19062875 ~ 19066644 (-) False LOC120565857
TU130828 other upstream 5164510 21232886 ~ 21241337 (-) True alkal1

Expression Profile