RNA id: XM_039811290.1


Basic Information

Item Value
RNA id XM_039811290.1
length 7029
RNA type mRNA
GC content 0.48
exon number 18
gene id camsap2a
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 17278204 ~ 17337273 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGCAACAAAGGTGCTGGGCTTGGAGAGCCACAGTGCGGCAGCAGAAAAACTGCACCACGGCACCAATGGATAGAATAGAGGAGGGAATGCTAAACACATAGGTAATCCATACAAGAATAAATGGACATGAAAGGGATACGCCGCCAGATTCCAAAGAACCCCAAAATGGAAATATTTGTGTTTCTATGCCAGCTGAAGAACAGTTTTTCCTCTGAAATCCAAGGAAACCTTCCCAGCTTGATCTGACGAAGCCCATTTCAACTGGTAGACAGCAGTATGGATGAGATACGCCAAGACTAGCGACTCATTGTGTCAACGAGACGAAAAAAAAGCCGGCAGCCAATctcgtttgtttgtttgtctgaaaGAGCCTGTGAATAGTCTGCGGAACGACACCCCAACTCGTCATTTCACCGTCGCTTATTGTTTTCCAAGAAATTCCAGTAGTGGGATGCTTTCGCGTTGTGTTGCTTCATAGTGTTCAAGAATACAATTGAGGGAGAAATATGGGGGAAGTTCAAGACGTCAGGGATGTTAAGAAGACCTTCGTTGCTCCAGCGATAAAATCTTTTGAGCACTATGACTTTTCTCGAGCCAAAATCTGTTGCAGCCTCACATGGCTGATGGCCAAAGCATACGGGACAGACAGCGTCCCGGCAGACTTAAAGGACCCCTTCTACACAGACCAGTATGAGCAGGAGCACCTGAAGCCTCCTGTGGCCAGCCTCCTGCTGTCAGCAGACCTCTACTGCAGGGCCGGCAGTCTCATCCTGAAGAGCGACTCTTCCAAGCCCCTGCTGGGCCACGATGCTGTCATTCAGGTGCTGGCTCAGCGTGGACTCTACGTCAGCGACCAAGAGAGACTGGTAACTGAGAGGGACCTTCGAAAGAGGCCTCTGCAAATGAGCGCTCACTTGGCAATGATCGACACTCTGATGATGGCGTACACAGTGGAGACGGTGAGCGTCGAGAAGGTGATGGCCTGCATTCGTCAGTATTCGTCTTACGACCCTGAGGTGGAAACACCTTATGACACAGAGGACGCAGTGACCACCTGGATCAACAAGGTAAATGAGTATCTAAAAGACATTGTGGCTCAGGAGCAGAGGATGAGGGAGACACAGAGCACCGACCCTGCTGGGAGTCCTCGGGCTCGCTACAGGAAGGAGCCGGCCTCGACCCAGCTGGTTCCCTGCATCCCCCCAGTGGACAACCTGCTGAAAGACAGCACAGACGGCTCGGCCCTGGGCGCTCTGCTGCACTTCTACTGCCCTCAGCTGCTGTCATTGGACGATGTCTGTTTGAAGGAGAACATGACGCTAGCTGATCGGCTGTACAACCTGCAGCTCATACAGGACTTCTGCAAAGACAACCTGAACAGCTGCTGCCATTTCAGCCTGGAGGACATGCTCTACGCCTCCTCCACCATCAAGAATAACTACCTGGTGTTCATGGCAGAGCTGTTTGGTTGGTTTGAGGTGGACAAGCCATCTTTTGTGAAACCAAGAATGCTGGACAACGAAGGCACAGAGCCCTCATTCTTGTCAAAGAATATACCAGCAATCCCCATCTCCAAGGCAACCAAGAGGAGCTTCATGGAGAGACCCCCAAGTCCTGAAAGACCCAGTTTGCCCCTCCGACCACAGCCTCGAAACTCAGGAGAGATCAAGAGGTCAACCTCAATGTCCTTTGTCGATGGCAACCTCGGCACCTGGCCCAAAGAAAAAAGGTCTGGGCCTTATGGAGTGTCTTTTGACATCCCCTTTGACAAAGAGGACTCTGCTTCCGGCGGTCTTCCCTCCACGCGTGGCATGGTCAGGTCTGTCAGCACTGATGATGGTTCCGGCTTCAAGGTCCACCACCTGCCCCGCGGAATGAAGCGTAACCTGTCCTTCCAGCCAGTAAATGGCCAGAGTGTCGGCATTGAGGAGGAGGGCTGCCCAGACAGCCTAGCTGGTATGGAGCCTAGCAGGCCAGCGTACCCCAACGGACATGGAAGTGTCATGGCAAAAACTCCCTCCATAGAGGAAGCCCTTCAGATTATCCATAGCCCAAATAGGCCCCCAGCGGAGGGGATCAACAGCGGTTTCTTCCTGCACACTCAGGACCACGGGGCTGGTGTTGGTGTCTTGGAGCCAGTGTCGGAGTTGGACTCCCAAGGGCCTCCGAGCACCACAGACACCACCGAGGTGGACACTGGCATCCATATTCAAACAGAAGACATGCTAGATGAGGATTCCTCTCTGAAAGACTGCTCCGTGAACATGGACCTGGATATGGACACGCCAAGCCCCTGCCCGAGCAGTCACAGCAAATCCCCCTCAGGGTTGAAGTTGACCAGCTTTGCTGaacagaagaagaggaagcaTACGCCATCATTGCCAGACTCGGGGAGGTGCAGCAGCAGCTCCCTCAAGACCACTCCTGAGGGCTCCGACTTTTGCCTCCCGTTATCTGTCTCCTGGGCCCCGACCCCTGAGCACAGCCCCAACCATCAACAAACCACACCCCCCCTCAGTGCTCAAGCATCGCCCACACCTGTACAACTTCCAGCCAATGACCCTGCTCAGGTCATGGCTACGGAGATGGTACAGCTGAGGATGAGGCTGGAGGAGAAACGTAAAGCCATCGAAGCGCAGAAGAAGAAAGTGGAGGCTGCTTTCACAAGGCATCGGCAAAAGATGGGTCACTCAGCGTTTCTCAATGTGGTAAAGAGAAAAGGAGATGGGGCTGCCagtggagaggaaggagggaaaaCCGAGGGAGAAGGCAAGGTAGCAAGCACAAGTCCCACCTTCAAATTTGGGAGGAGCAAGGCGGACACACCCGATGGGGCAGAGCAAAGCAGCACCGCTTCCTGTTGGACAAAGTCGCCTGGTGCAGGAGAGGAAGGTGGTCAAAGCCATGCTCAGCTCACCGAGGTAGATCTCACCGAGTACACGCGCTCAATTGAGAAACTGAACCATTCATTAGCCTTCCTTCAGACTGAGATGCAGCGACTGGCtcagcagcaggaagtgatcatGTCCATGAGGGAGAAACAACATCAGCAGGCGTGGGTAATCCCTCCTCCCCATACAACCCCATCGCCGCAAAAACAGAGTCGAGCCGGAGCTGTTACTCGATCCTCAGGACCCTCTTCTCCTGCCGACTCCCCTCGTTCCACCCACCGCTCTCCAACCAGCATCAAGCGCAAATCTGCCTCCTTCCACTCACGTACTCCTCGCGCCGCTCGACCCAACGAGCTGAAGCTGGCCCCTTACAATCGAGTCCTAACTGCCCCACAATCTGTCGACAGCATCCCCAGGCTACGGCGATTTTCTCCCTGCCAGCCCTTGGCAAGTTCTTTCGTTTACATGGGGGAGAAACCAGCAACCTCCAATCCAGAGACAGTAGGTTCAGATGGAGATAAAAACAAGGAGACAGAGTCACTAGATTCCCCAGAGAGGGAGATTGCTGGTGTATGTGTAGCCAACTCACCGCCCAGCTCCCCCAACCTGCAGAACAAGAGCGAACAAACAGAAGCAGATTCAGTTCAGAAGTCGGTTGCAGATCTGAAACCTACCATAGAGTCATCATTTCCTGAGGTTCTGGCCCACCCTGTGGTAGAGACCTTCACAGTGACACCTACAGAGATTCCTCCCCAGCCAGAAGCCTCAGGCCAAGTCAAGAGCAGCTTGATTGAGGTTCCTCTGTCAGTCATGAAGCCACTGGATGATCTGTCACTTGATGATGATTTGGAGATGCAGCAGGGTGATGTGGAAGGCCCGTATCAGGAACAGAAGATTTCTTGTGGTTTTTTCTTCAAGGCGGATGGAAATGCCGAGGATAACATGGCTCAGAAGAGGGCAGCTCTGTTAGAGAAAAGgatgaggagggagaaggagagccAGCAGAGGAAGATGCAGCAGGAGGCTGAGATAGAGCAGAAGAAGGAGGAAGCTCGACTGAAAGCAGAGGAGGAGCGCGTCAGGAAGGAGGAAGACAAGGCCAGGAGGGAGTTCATCAAGCAGGAACATCTCAGGAGGAAGCAGCTTAAACTGATGGAGGACATGGATACTGTCATTAAACCTCGACCAGTCAGTGGGGCCAAGCAGAGGCGGGGGCGTACCAAGTCCATCCATCGCGACAGCATGGACTCCCCCAAAACCCCTGTCAGAGCTGCCACAGGTTCACGCCAACGTGTCTTTTCAGTCTCCAGCTTGTCCCTTGCTTCCCTCAACCTGGGAGACAGCGACAGCGTTCACTCTGAGAAAAGATCGCCAAGAAGTGCTAGTTTAGCCTCTGGTGCTCTCTTCTGCTTTCTGAGCTCTCCTAAACTGAGAAGAAGtaggcCAGATTCTGCAGATGGCTTCCTGTCCCCGAGTCGCTGCAGCAGCAGGAATGGAGAGAAGGACTGGGAGAATGGATCCACGACCTCCTCTGTTACATCTAACACAGAGTACACTGGACCAAAGCTATACAAGGAGCCCAGTGCCAAATCTAACAAGCACATCATCCAGAATGCTCTGGCCCACTGCTGCTTAGCAGGCAAGGTTAATGAGGGGCAAAAGAACAAGATCCTGGAGGAAATGGAGAAATCAGGGGCCAACAACTTTTTGGTTTTGTTCCGAGATGGCGGCTGCCAGTTTCGCTCTCTCTACACCTACTGCCCCGAGACGGAGGAGATCAACAAGCTGACAGGCATCGGCCCCAAGAGCATCACACGCAAGATGATCGACGGCCTCTACAAGTACAACTCGGACAAGAAGCAGTTCAGTCAGATACCAGCCAAGACCATGTCGGCCAGCGTGGATGCGGTGACCATCCACAGCCATCTCTGGCAAACCAAGAAGCCAGCCACCCCTAAAAAAGTAGTGCCTGCCCAGTCCTAATGGAACTTAATACACCCAACATCACCATTCCCCCCTCATATGGAACATACCCATTTCAATTTGCACTTCACTGTACATATCCATGAAGATTCAAGCACCTGCAATGCCAGTTAGATGAATGCATATTTGTCTtaggtttatttttgtttgtttgtttgttttttcttctcattGCATTCCTGTCCTTGTTTTTCCTACTTACTCTGGTCTGGACATGATAGGACTCAAAGATTATGAACAACTGGAATGTATGCCAATGCTTATCACTTCTGTGTTTTTAGAGATTGTCATGTTTGAGTCAAGTTATGAAGGCATGTGTGGGTGTTTTGTTTCCTATGTGCCAAACGTCAAAAAATCAGACAGTATGAATGCCGGGACATTTTACTGAAGCACtgaatgtttttaattaatgtACATATTGATCTACGTTTGCATTATCCTGTTGATGTGTGGCCTTATGCGCGTTTTGTTTTAGCGTGTGAGTGCAATGAGGTGATTGTAAAACGGCGTATACAGATGGGATTTTTTTGTACTTAGaagaacacttttttttcttcatccctGTGGGTAAAACGGTTTGTATATTAAGGTACACAAAACTACAAAACGAATTGCATACAGCTAGTGTTAGCCacacagtatatgtgtgtgttcagctcAACAAAGCCAAGCGGTTTCAGCTTTTTCAGAACCCTTTTTGAGAAAGTGATTTCAAAGAATGCAGGACGTTACCGTGGATCACTGGTTCTCAACCTGGTGGTCGAGACACCTGCAGACGATTTGAACTATCGTGTtatgtgtggaaaaaaaaatctatttctgATATACAAATATGCTGTCATGTTTGCAATCGTTGTGTTAAATTCCTTTTTACTCCTAATATACAGAAGTAGTTTCAACCTCAAGATGTACTCCAGGAAGTAAAGTTGACAGACAGTGAAAGTAAAACTCCTCCCTATATTAACCATCTGGTTTGTTTTCACTTGGGGTTTACAATGAGGCATTGCTTCAgccaaaaaggttgagaaccagtGTTGAAAATCACTCTGCTGCTGGTTCACAGCAGATTTGTGAACAAATAAAACAGCTcagtattattttttattgtcaaaTGCTGCCTACTGCAGCACATAGGATCTTTGCAGATTATTAATATAATGTACGATTACACTCTCACCCACTGGTGTCAGTAAAATGACTCCATTCCAAGATAATGACACCTAACAAGTTTTTCTCTGTATCAATATCAGGATTTACAATTAAATTCATAATAGTACTTCATTGACTTCAGATTCACACCAGGCTTACTTACTGTATCTTTTAAAAGAAGTCTGCACCTAAGGTAAAAGCAAACACCAGATGTCGTTAACATAAGCATAAAGTTTGGATTGCTTAGTTAAAAATCAATTGCTTGCACTGTACATCACTGCAAGTGTTGCTGATTCATTAAAATTGccacactgttactatggtttTCATTTTCAACACATCTATGCATCTGTTGCTCTTACATTCTTACATAACACAAACGTGTTGTCCCAAACAGCCTATAGATGCAACGCGTCCTAGATAGACCAGACAATATACTAATGTTGTTagatttcttttatttgtttgtgttattaggATAATGAATTTCACAAAATAATGCAAGGCAGAATAAGGAAGATTCTTGTTGCTGCATACGGGTAGAGACTCGCCACAGAGTTTCATTGGTGTCAGTATCACGTTCCTTTTGCCACCGAATGTCAAATCAACATAATTTGCAGGTACGGTTTCCAACAAAAGAAAATCTGCTAAGATTATGCTTTGTTTTTTAacgggaggggaggggggggatatTTATGACCAAAAGAGAGCATGTACATGTCTTTGAAAATGTAATCTAATGTAACAGAGTGTTTCTCTGTTGGTAATTAGAATGATTTGTCAACTGAAGCTATGTCCACTATCTATGGCGGTTTAAGGCCAAGGTAAATGGTTATTTAAACTCTAATGATATTGTACAGTGTATTCATGTGAGCTCATACCTATTCACTATGatgactttgttttgtttgtcagaTGCTGTGCTGTCATTCAACATATTGCTGAACATGtagttttaattttgtttttgttttttggcatTTAATAAAACTAAGCATGGCCTCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129691 lncRNA downstream 28681 17236340 ~ 17249523 (-) True G96151
TU129678 lncRNA downstream 82039 17195929 ~ 17196165 (-) True G96143
TU129677 lncRNA downstream 88484 17189480 ~ 17189720 (-) True G96142
TU129675 lncRNA downstream 94586 17177287 ~ 17183618 (-) True G96140
TU129656 lncRNA downstream 151456 17126352 ~ 17126748 (-) True G96127
TU129775 lncRNA upstream 273348 17610621 ~ 17610992 (-) True G96216
TU129813 lncRNA upstream 348321 17685594 ~ 17701131 (-) True G96247
TU129824 lncRNA upstream 387825 17725098 ~ 17725666 (-) True G96255
TU129830 lncRNA upstream 412995 17750268 ~ 17754016 (-) True G96259
TU129842 lncRNA upstream 534737 17872010 ~ 17875325 (-) False G96267
XM_039811533.1 mRNA downstream 799 17263364 ~ 17277405 (-) True LOC120565629
XM_039810344.1 mRNA downstream 17180 17257310 ~ 17261024 (-) False lim2.2
XM_039810345.1 mRNA downstream 17925 17257304 ~ 17260279 (-) True lim2.2
XM_039810240.1 mRNA downstream 47156 17220514 ~ 17231048 (-) True gipc3
XM_039810976.1 mRNA downstream 1023767 16226826 ~ 16254437 (-) True jak3
XM_039811825.1 mRNA upstream 131168 17468441 ~ 17538999 (-) True nr5a2
XM_039811334.1 mRNA upstream 367112 17704385 ~ 17713272 (-) True ankle1
XM_039811335.1 mRNA upstream 367112 17704385 ~ 17713268 (-) False ankle1
XM_039810342.1 mRNA upstream 376396 17713669 ~ 17720659 (-) True LOC120565036
XM_039810320.1 mRNA upstream 390283 17727556 ~ 17739988 (-) True alpi.1
TU129083 other downstream 1834965 15438172 ~ 15443239 (-) False LOC120565484
TU129051 other downstream 1895342 15379507 ~ 15382862 (-) True G95680
TU128848 other downstream 2655192 14621288 ~ 14623012 (-) False dda1
XR_005640309.1 other downstream 3034671 14236539 ~ 14243533 (-) True LOC120565956
unassigned_transcript_389 other downstream 3364842 13913281 ~ 13913362 (-) True trnas-aga_8
TU129772 other upstream 217824 17555097 ~ 17555736 (-) True G96213
TU129841 other upstream 529344 17866617 ~ 17875325 (-) True G96267
XR_005640208.1 other upstream 1682705 19019978 ~ 19061893 (-) True psmd1
XR_005640297.1 other upstream 1725602 19062875 ~ 19066644 (-) False LOC120565857
TU130828 other upstream 3895613 21232886 ~ 21241337 (-) True alkal1

Expression Profile