nr5a2 (nr5a2)


Basic Information

Item Value
gene id nr5a2
gene name nr5a2
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 17468441 ~ 17538999 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039811825.1
ATCTCGAGACAGTCCGACCGACACACCGGCGGCCCCGGTGGCGCGTACTCGTCTGCTAAAGGCTGAAAGTTACACTGAAGGTCCCACTTTAATGGCTGACGCGCTAAAAAAGACTTTTGGAAAAGGGACACTTACCATCGTCTTTTATTCCGGACGCTAgctatgttcttttttttctcgtttGAGTAAGAGACAGATTCCCTAACTTAGCGCGCAACTGTTCCTTAAAGTATCGAAGGAATTAATCGGCTGCTGTCTGCGTCGTTATCGCTGTTCTGTGCGCTAATGCAATTTTGAGAAATTAAACAAGTgaagttatatcagaatagaCATGCAGCAGCGATGCAACCCGGTCGTTTGAGGACAGTCTGACTCTTGGATCAGGCATCATGGTCCGATAAttggaagacagagagagacagaaagtaagaaataaagaggtaaaaagaCATTTGGGACACTTTGTTTGTGGGAACATCTGCCTCTCACGTCCAGGTGTCCCGCCGAGCGGTGCGGAGTCTCCAGCTCAGGCCGGCAGCGCTGACATGCTGCCCAAAGTCGAGACTGAATCCCTGGGACTCTCTCGATCGTATGGAGAACATCGGCGCATGCCAAGGAATATGCAAGCACCCCAGTTAAAAATGATGGACTACTCCTATGACGAAGACTTGGACGAGATGTGTCCCGTGTGCGGAGACAAGGTTTCAGGGTATCACTACGGACTACTGACCTGCGAGAGCTGCAAGGGCTTCTTCAAGCGCACCGTCCAGAACAACAAGCGCTACACATGTATAGAGAACCAGAGCTGCCAGATTGACAAGACCCAGAGGAAGCGCTGCCCGTACTGCCGCTTCCAAAAGTGCCTCACCGTCGGCATGAAGCTAGAAGCTGTGCGGGCGGACCGCATGCGTGGTGGTCGCAACAAGTTTGGCCCGATGTACAAACGTGACCGGGCCCTCAAGCAGCAAAAGAAGGCGCTGATCCGAGCCAACGGCCTAAAGATTGAGGCCATGACTCAGGTCATGCAAGCCGTGCCCACCGACCTCACCATCTCCTCAGCCATCCAGAACATCCACTCAGCCGCATCCAAGGGCCTTCCACTGAGCCACCACCCTGGCCACCACACCggtcaccaccaccaccaccaccatcatcatgcCACCGCCCTGCCCCCCACAGACTACGACCGCAGCCCATTTGTCACTTCGCCAGTCAGCATGGCAATGCCACCACACGCCGGAAGCCTGCAGGGCTACCAGGCGGCCTACGGACACTTCCAGGGCACGCGCACTATCAAGTCAGAGTACCCAGACCCGTACACCAGCTCGCCGGAGTCCATCATGGGCTACGCCTACGTCGATGCCTACCAAACAGGCTCGCCGCCTAGCTTCCCTCACTTGATCGTAGAGCTGCTCAAGTGTGAGCCAGATGAGCCACAGGTCCAGGCCAAGATCATGGCCTACCTGCAGCAGGAGCAGGCCAGCAGAGGCAAACACGAGAAGCTCAACACCTTCGGCCTCATGTGCAAGATGGCCGACCAGACACTCTTCTCCATCGTGGAGTGGGCACGCAGCAGCATCTTCTTCCGTGAACTCAAGGTGGATGACCAGATGAAGCTGCTGCAGAACTGCTGGAGCGAACTCCTCATCCTCGACCACGTCTTCCGGCAGGTGATGCATGCCAAGGAGGGCTCCATCCTATTGGTCACTGGCCAGCATGTGGACTATGCAGTGATTGCTTCACAGGCGGGATCCACCCTCAACAACCTGTTGAGCCACGCCCAGGAGCTGGTGGCCAAGCTACGCTCCCTGCAGCTGGACCAACGGGAGTTCGTCTGCCTCAAGTTCCTGGTCCTATTCAGCCTTGATGTAAAGAACCTGGAGAACTTCCACCTGGTAGAAAGCGTCCAGGAGCAGGTCAACGCAGCGCTGCTGGACTACGTCATGTGTAACTACCCGCAGCAAACAGACAAGTTTGGCCAGTTGCTCCTCCGGCTGCCAGAGATCCGAGCCATCAGCCTGCAGGCCGAAGAATACCTTTACTACAAACACCTGAACGGCGACGTGCCGTGCAACAACCTGCTCATTGAAATGCTTCACGCCAAGAGAGCTTAGGAGGGGACTGCGCTACCCATAATGCAGCTGTACAGACATCCTGAGAGTTTTGCTGCAGCCCAAAAACTCTAAATCTTGACTGAGCGGTGACCTGGAAGATGGAGAGCAGAGAGTTAGCAACTCTTGTTTATATTTAGCTCATTTTGATCTTCAAGTTTCTTGGATttggacaaacacacatgcacagagacaaaaacagcaTATGGATCCctttattctgaaaaaaatgtctgaaagAAGAACCCCTTCTCCTCAACCACACAGACAAAGATAATATTGAAAGGAGAAATAAACTAACACTTGAAACAAACACTGCATTTGGCACGAGATGGGGTTTAATGGTCTGCACGAGCACAGCCTATCACGACTGGCAGGCTGCAACTTACAGAACTAAACCCTCAAGTGTTTTAGCGCTAGTGACATTGTGAGAGGCTTTTAATGCTGAGAAAGGAAGCTGAGTAACACCGGCCATCTTTCAGACAGCTTTGTGACAGAGCGGTGGCTTATTTGGGTGGACGATCCTCCGGTGTGCTCTCACTGAAACCGGCTTTTAGCTGTCGTTGGTACTGTAAAGACAAACGGGCAAGCAGTCGACCAGCCCAGACACTCTTACCGTCACGTTTTGTGAACTGACATAAGACGCCTGCCACGGCAACTTGATCTAACTGAGAAGGGAAAACTGACAGTTAAAAAAGAAACgtctaaaaaaaggaaaattctTTAATGAACAAAATGATAAATAGGCCAATATGAAGAAAAAtaagatgtttttttctcttgtaaTGAAAGTCATTTGCTCCTCGTGGTCACCTTGTGGTTCCCCTTTCTTATTCCACCTCCCCAAATCATCCTAAACTATGTACCTCAGAAAGACCAGTGTTAAATAAATTCTATTAATAATGTCAGCTGaaacaattgtatttatagCCCCTTTTTCCTGCAAAACAAACACcctctctttttattatttcattacaactggaacaaaacaaagtgtgattctGGAGACAGAGAAGGCTCGACCCTGCCTTTTTCCGGAAAGACCAAAGCCTGCTGCAGAACAGAAGAAGGGAATTACACAAACCTTAATAATCAGTATtataagaggaaaaaaaaaaagatttgtgatgtcacagttaTGTGAGTCTTGCCTTATTTCATTACCATGCTAGCTAACCGTGCAGATGTGAATGAAAATatgtacaaatatatatataaagtattaatgttgtaaaaattaaaaaaaaaagaataattcaACAGGTGTTTACATTCATGTG

Function

symbol description
nr5a2 Enables DNA binding activity and DNA-binding transcription factor activity. Acts upstream of or within several processes, including cartilage development; digestive system development; and hepatoblast differentiation. Predicted to be located in nucleus. Predicted to be part of RNA polymerase II transcription regulator complex. Is expressed in several structures, including digestive system; endocrine system; head; nervous system; and slow muscle cell. Orthologous to human NR5A2 (nuclear receptor subfamily 5 group A member 2).

NR:

description
nuclear receptor subfamily 5 group A member 2

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K08027 NR5A2, FTF; nuclear receptor subfamily 5 group A member 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039811825.1 True 3394 mRNA 0.49 7 17468441 17538999

Neighbor

gene id symbol gene type direction distance location
camsap2a camsap2 coding downstream 131168 17278204 ~ 17337273 (-)
LOC120565477 NA coding downstream 159415 17306866 ~ 17309026 (-)
LOC120565629 LOC104945263,LOC103364913 coding downstream 191036 17263364 ~ 17277405 (-)
lim2.2 LOC100701835,LOC102794991,LOC101468118,LOC101061816 coding downstream 207417 17257304 ~ 17261024 (-)
gipc3 gipc3,LOC100702370,LOC102212133 coding downstream 237393 17220514 ~ 17231048 (-)
ankle1 LOC107575641 coding upstream 165386 17704385 ~ 17713272 (-)
LOC120565036 LOC104958198,LOC108234254 coding upstream 174670 17713669 ~ 17720659 (-)
alpi.1 LOC104958196,LOC103372500 coding upstream 188557 17727556 ~ 17739988 (-)
b3gnt7 b3gnt7 coding upstream 341558 17880557 ~ 17884760 (-)
LOC120565809 armc9 coding upstream 353681 17892680 ~ 17921553 (-)
G96151 LOC103364910,LOC104945262,LOC104928005 non-coding downstream 218918 17236340 ~ 17249523 (-)
G96143 NA non-coding downstream 272276 17195929 ~ 17196165 (-)
G96142 NA non-coding downstream 278721 17189480 ~ 17189720 (-)
G96140 NA non-coding downstream 284823 17177287 ~ 17183618 (-)
G96127 NA non-coding downstream 341693 17126352 ~ 17126748 (-)
G96216 NA non-coding upstream 71622 17610621 ~ 17610992 (-)
G96247 NA non-coding upstream 146595 17685594 ~ 17701131 (-)
G96255 NA non-coding upstream 186099 17725098 ~ 17725666 (-)
G96259 NA non-coding upstream 211269 17750268 ~ 17754016 (-)
G96285 NA non-coding upstream 352629 17891628 ~ 17892375 (-)
smim7 smim7 other downstream 1448223 16018032 ~ 16020218 (-)
LOC120565484 LOC104958137 other downstream 2010540 15387888 ~ 15457901 (-)
G95680 lsm4,LOC106613629 other downstream 2085579 15379507 ~ 15382862 (-)
LOC120565366 LOC103365555,LOC102781831,LOC102293722 other downstream 2294692 15163458 ~ 15173749 (-)
lhx9 lhx9,LOC102787388 other downstream 2674983 14778993 ~ 14793458 (-)
G96213 NA other upstream 16098 17555097 ~ 17555736 (-)
G96267 ncl,LOC106535335 other upstream 327618 17866617 ~ 17875325 (-)
psmd1 psmd1 other upstream 1480979 19019978 ~ 19061893 (-)
LOC120565857 NA other upstream 1523876 19062875 ~ 19066644 (-)
negr1 negr1 other upstream 2216356 19755355 ~ 19950334 (-)

Expression


Co-expression Network