G182210


Basic Information

Item Value
gene id G182210
gene name NA
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 15690774 ~ 15692350 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU215666
tgaaGAATCAGACTTGTGGAAATTGTGTAACATTTCATCTTTGGATGCTTTAAACCAGGTGTGTTATAAATGTTAGTTGTTATAGTGATCAGAATCAAATGAATGGATCCAGAATTTCACAACAttattaatgttcatgaaaACACAGTGCTTCCCACACTCATGTAAATACTGAAATTAGTAACACACCAAACATAGAAAcaaagttttaatttttttttttttttaaagaaggtGGAAACAGTCCACACTAGGACGTGAGTTAAAAGCTGAGCCACATGCTCAGTGACTGATATGTGCTTCCCTCTTGTGGAAAATACAGTGAACAGCCTGAACAGTGGAAGAAAATTCTGGTCCTTAAGCTTTCATAGACAGAAACAGCTccatatatactgtaaatccATATAAATGGTACAAGATGAgcaataagggaaaaaaatattataactaCTATTATTATGCAAAGTATAACTTCTCAAAACAGTAGAAACAGAATTTCatgataaaagaaaataaaatagccTTGGTCAATGCAGTTATAAAACAGCTGGATATTGAATTTCGGTACATTTATGTCAATTTTTGCAAAACATATGTacagtgctttttaaaaacttatATGAAAATAGATTTAAGAGACATTTCTGGACTACAGTCATGTAACGTTGTGCCCTGTATTTTATCATAATGTTGTGTAGATCCCGGTGTGTAATGGATGTCatatttcaaatgatttttaacattttcttggCCATCcaataaaagaaacataaacTCAACCAAAAACCAACTAAATGTTATATAACATGCTGCAGTACATAAGCTGCAGTAcagattgattaaaaaaatgtttacaggCGTCCCTGACAGTTTTTGGTATATCAGGCGAGAGTGGCTTTAGAAAGTCTGGGACGTCCTTTCCAAATTATTCAAAGCCTCAATcagaaatggatgaaaaaaaaaaaaaaacaacacgaTGGCTACTGAGaacatttaatgtaatgctGTAATATTTTAGGGCTCTGTTATGAAGCAACTCTCACCACTTTACAGTAATTTCTTATAAACCAGTGAACAGATTGGTCCATACCTGGTCTTGATCAATTTTTCATATCAAAAGACAACATGTTTGGAACAATCAGGTTCAAGTTGCCTTTCCGAATGGAAACTGGAAACACTGTTACGTTAACAATGTACTATACATGTATTTTTCTCATCATAGCTGGTTTTGCACAGTTTGACATTCCAAATAATAAAAGACCAGCTGTttacacagtgctgtgtgtttgccGTTATCTCTGCCAGCCATCACCGACCTCCATGTGCTTCAAACTGGCTCACTCTCCTCCCTGTCCGTGTCCACGTACGGCCCGGGAGGTGGCCGGCTCATCCCATCAGGACCACCCACTGGTGAATGATGGGAAGAAGGTGTGGCCGGGGAGAGCGTGTGTTCAGGAGAGGCACGCTCTGATTTGATGTTCAGGTTGAGGGAGGAGAGAGGTGGAGAAGAGGGGGAGGAGCCTTGGGAAGAGTAAGAACAGCCTCCACCTGTGGACATCCTGTACATAGAGACACAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU215666 True 1577 TUCP 0.38 1 15690774 15692350

Neighbor

gene id symbol gene type direction distance location
tmem221 tmem221 coding downstream 15544 15671606 ~ 15675230 (-)
rfxank rfxank,LOC107599486,LOC107554808,LOC107687741,LOC107719616 coding downstream 21991 15665587 ~ 15668783 (-)
ncanb ncan,LOC108270525,LOC103376785 coding downstream 46160 15535310 ~ 15644614 (-)
si:ch73-63e15.2 LOC108271013,LOC108429539,LOC107669818,LOC106573581 coding downstream 188118 15445028 ~ 15502656 (-)
tjp3 LOC108271152 coding downstream 252050 15417214 ~ 15438724 (-)
tmem161a tmem161a,LOC107599454,LOC107719614,LOC107728546,LOC107554814 coding upstream 2804 15695154 ~ 15705238 (-)
cirbpb cirbp,LOC108271114 coding upstream 187880 15880230 ~ 15885868 (-)
midn midn,LOC108271022,LOC103463687,LOC102230511,LOC106954193,LOC100691436,LOC102311033 coding upstream 279236 15971586 ~ 15990415 (-)
atp5f1d atp5d coding upstream 309701 16002051 ~ 16010315 (-)
polrmt polrmt,LOC107569035,LOC101483880,LOC107719647 coding upstream 431153 16123503 ~ 16172315 (-)
G182209 NA non-coding downstream 2356 15688199 ~ 15688418 (-)
G181810 NA non-coding downstream 523103 15167158 ~ 15167671 (-)
G181781 NA non-coding downstream 563592 15126661 ~ 15127182 (-)
G181779 NA non-coding downstream 569108 15121455 ~ 15121666 (-)
LOC117598447 NA non-coding downstream 626737 15060131 ~ 15064037 (-)
G182212 NA non-coding upstream 1619 15693969 ~ 15694702 (-)
LOC113546824 NA non-coding upstream 138174 15830524 ~ 15833544 (-)
G182298 NA non-coding upstream 200496 15892846 ~ 15893060 (-)
G182303 NA non-coding upstream 211928 15904278 ~ 15978716 (-)
G182318 NA non-coding upstream 277715 15970065 ~ 15974619 (-)
lama3 LOC108270685 other downstream 1111027 14550906 ~ 14579747 (-)
tnfaip8l1 tnfaip8l1,LOC107702643,LOC107727554,LOC107698600 other downstream 1183164 14497150 ~ 14507610 (-)
LOC113532209 LOC108271183 other downstream 1196915 14487120 ~ 14493859 (-)
zfr2 zfr2,LOC108271074,LOC107742797,LOC108430234 other downstream 1230437 14437360 ~ 14460337 (-)
rx1 LOC108270609 other downstream 1275705 14408726 ~ 14415069 (-)
micos13 c10h19orf70,cunh19orf70 other upstream 582532 16274882 ~ 16278857 (-)
zgc:172076 LOC108271265,LOC108411951 other upstream 1553422 17245772 ~ 17342254 (-)
traf5 LOC108271110,LOC108411952 other upstream 1650465 17342815 ~ 17352369 (-)
trnav-uac_6 NA other upstream 3623769 19316119 ~ 19316374 (-)
G184716 rps15,LOC107685215,LOC107578086 other upstream 4002912 19695262 ~ 19697709 (-)

Expression


Co-expression Network