zgc:172076 (LOC108271265,LOC108411951)


Basic Information

Item Value
gene id zgc:172076
gene name LOC108271265,LOC108411951
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 17245772 ~ 17342254 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU216998
TGCATTCCTGTCCGTGCACAGTGCACTCCACAATCACACGCTGCAGCCAACGAGAAAGGAtgtggaagagaaagaaagaatggttGATCAAGCCCCCCAAGGAGCACCCTTTGGAGACAAAGTACAGGCCTGTGCTTGAGAGCATGATCCCCCCAGACCCCATGAGCAAGCTTAAACTGAAGAGGGGTTGTCCCAAAGAAGAGTTCCCTAGTCTGGATGGAAACTACACCTGCATGGCCCGTGTGCTTGATCTGCATATGTACACACGCCAGTTCAACCGGGCCACTGAGAGTGGAGTCATCTTTGATGACATCATTCGTCCAGGCCTGGAGGACCTAGGAACAAGCACAGGGCCTTTGACTGTAGGCTGTTTAGCCGGAGATGCTCAGTCCTACATTCTCTTCTGTGACTTTTTTGACCGCATCATTGAAGCCTACCACAGCTACAAGGTGCTCGGTCACGTTACGCAAAAGAGTGACTTCAATTATGACAACCTCAAGAAAGGTGATGGTATTTCA
>XM_034308713.1
AGTGCTTGTGCTGCATTCCTGTCCGTGCACAGTGCACTCCACAATCACACGCTGCAGCCAACGAGAAAGGAtgtggaagagaaagaaagaatggttGATCAAGCCCCCCAAGGAGCACCCTTTGGAGACAAAGTACAGGCCTGTGCTTGAGAGCATGATCCCCCCAGACCCCATGAGCAAGCTTAAACTGAAGAGGGGTTGTCCCAAAGAAGAGTTCCCTAGTCTGGATGGAAACTACACCTGCATGGCCCGTGTGCTTGATCTGCATATGTACACACGCCAGTTCAACCGGGCCACTGAGAGTGGAGTCATCTTTGATGACATCATTCGTCCAGGCCTGGAGGACCTAGGAACAAGCACAGGGCCTTTGACTGTAGGCTGTTTAGCCGGAGATGCTCAGTCCTACATTCTCTTCTGTGACTTTTTTGACCGCATCATTGAAGCCTACCACAGCTACAAGGTGCTCGGTCACGTTACGCAAAAGAGTGACTTCAATTATGACAACCTCAAGGgtgatgaTGACTTTGACCAAGCGTATGCTGTGAGCTGTGAGGTGAGTGCTTCTCGCTGCATTGACGACTTCTGCTTCCCCACACACTGCAGCCGAGGGGAGCGGAGACATCTCCTCACACTGGCCAAAAAAGCTCTGGATCAACTTAGCGAAGAACTCCCAGGCAAGCTTTACTCAATGGAAGAGCTCAACCAAGAGACAGAAGATAAAGGGCTCATTCTGGATGCCCCACCCACCACATTAATGAAGACCGGAGTGGCCCGAGATTGGCCTGATGCACGGGCATTGTGGATGAGTGACAATGGGAGCCTGGCAGTTTGGGTGAACATGGAGGACCATCTGAAACTGGTGTCTTCCAGAAGCGACGCCAATATCCAGGAGGCATTTGCATCTGTGTGCATCAATCTAGTAAAGTTGGAGGCAATGTATAATAAACTAAGGCACCCGTTTATCTGGAAGCCTCACTTGGGCTGGGTGGTGAGCTCACCGGCGGAGGTGGGCACTGGTCTGAAGGCCAGTGTCACTGTCAGGCTGATACACCTGCCTGAGCACAAACACCTGAACAACATCCTGGACAGACTGAGACTTCGCATGGAGGCAGACAACTCATATGGATTGTACAAAATAAGCAACCAACAAACCATTGGACTCACGGAAGTGGAGTTTACACAGCTCGTGGTGGATGGGGTTAAACTTCTCATCAGGATTGAGAAGAGACTGGAGGACAATGCGGGCATTGATGACCTGGTGCCTGCACAGAAGTAGAGTCACCACCCAGCTACAGGACATGTTTTACGGAGACTAGATGCACTGTGCACTGTTATGCGTTGTAGTACTTCTGCTCATGGAGCGCTTTCACAAAGCTATGCATAgttaaatcacatttaaacagtgttctgaaaaagaattttgttattgtttgatttgatttgaatttgatgTGGAGCCCACTGCTCCACTGTATGTACAGGctgttaattaaaatacattacagcacTACTGAATTATCAAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU216998 False 518 TUCP 0.50 5 17245772 17342243
XM_034308713.1 True 1523 mRNA 0.49 10 17332043 17342254

Neighbor

gene id symbol gene type direction distance location
tle2a LOC108271319,LOC108430092,LOC107593318 coding downstream 137949 17072405 ~ 17107823 (-)
LOC113532093 LOC108271243,LOC108430097,LOC107676979,LOC107717980,LOC107586407,LOC107719556,LOC107593324 coding downstream 339633 16894004 ~ 16906139 (-)
ubxn6 ubxn6 coding downstream 449394 16786676 ~ 16796378 (-)
scamp4 scamp4,scam4,LOC108270895,LOC106584398 coding downstream 473243 16767043 ~ 16772529 (-)
pias4a pias4,pias4a,LOC107586389,LOC107655204,LOC107596878 coding downstream 480806 16752907 ~ 16764966 (-)
rcor3 rcor3,LOC106564802,LOC106585063 coding upstream 13510 17355764 ~ 17363731 (-)
pex6 pex6,LOC104944420,LOC107662915 coding upstream 81073 17423327 ~ 17436742 (-)
tm4sf4 tm4sf4 coding upstream 162338 17504592 ~ 17507043 (-)
hps3 hps3 coding upstream 205642 17547896 ~ 17568551 (-)
si:ch211-284e20.8 LOC108270536 coding upstream 230933 17573187 ~ 17576080 (-)
G183276 NA non-coding downstream 53540 17189361 ~ 17192232 (-)
G183166 NA non-coding downstream 292779 16911718 ~ 16952993 (-)
G183170 NA non-coding downstream 396512 16846429 ~ 16849260 (-)
G183145 chaf1a,LOC107679837,LOC107717976,LOC107593329 non-coding downstream 466817 16778017 ~ 16778955 (-)
G182511 NA non-coding downstream 921828 16322185 ~ 16323944 (-)
G183376 LOC107583667,LOC106959365 non-coding upstream 49437 17391691 ~ 17392117 (-)
G183385 NA non-coding upstream 64722 17406976 ~ 17407422 (-)
G183399 NA non-coding upstream 110616 17452870 ~ 17453109 (-)
G183400 NA non-coding upstream 110964 17453218 ~ 17453463 (-)
LOC117598411 wwtr1 non-coding upstream 111808 17454062 ~ 17455608 (-)
micos13 c10h19orf70,cunh19orf70 other downstream 966915 16274882 ~ 16278857 (-)
G182210 NA other downstream 1553422 15690774 ~ 15692350 (-)
lama3 LOC108270685 other downstream 2666025 14550906 ~ 14579747 (-)
tnfaip8l1 tnfaip8l1,LOC107702643,LOC107727554,LOC107698600 other downstream 2738162 14497150 ~ 14507610 (-)
LOC113532209 LOC108271183 other downstream 2751913 14487120 ~ 14493859 (-)
traf5 LOC108271110,LOC108411952 other upstream 561 17342815 ~ 17352369 (-)
trnav-uac_6 NA other upstream 1973865 19316119 ~ 19316374 (-)
G184716 rps15,LOC107685215,LOC107578086 other upstream 2353008 19695262 ~ 19697709 (-)
dda1 dda1,LOC107685208,LOC105913185,LOC105939318 other upstream 2363828 19706082 ~ 19712597 (-)
elavl1b LOC108270814,LOC108437281,LOC103034406,LOC105889513 other upstream 2840788 20183042 ~ 20192143 (-)

Expression


Co-expression Network