traf5 (LOC108271110,LOC108411952)


Basic Information

Item Value
gene id traf5
gene name LOC108271110,LOC108411952
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 17342815 ~ 17352369 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU217059
CCGCAGCGCCTGGTTGCGCGCGCGCGTGCGGAGGAAAGCGTTCATTTCGGAGCTCCCCGGTGGGCTCGTGACACTCAGACCGCGGTATTACTAATTCactgaagagagagagcgagacagagagagagagagagacagagagtgagagaaacgACCGACACCGAGCTCGAGTTATTCTACACTCTCAGAACAAAGAGTACTAACCTGTACCTTCCCTTGTTGCTGGc
>TU217060
GGACCATGAAAAGATGTCGTGCCCTGAAGCTGAAGTTCAGTGTCCCAATAACTGCTCTCAGATGGTTAAGAGGCATAAGCTCAAAGGACATGTAGATGAGTGTCCAGAGGTGGAGACAGACTGCATTTATAAGCAATATGGCTGCACAGTCCGAGTAAGTGCACTAACACTGTCTACTCCTTTTCCA
>XM_026927769.2
TAAGCGCGCTTTCCGCTGGCAGCACGCCAGTTCCGAAACCGTGACGTCACGGCGTGTGTTCCCGCAGCGCCTGGTTGCGCGCGCGCGTGCGGAGGAAAGCGTTCATTTCGGAGCTCCCCGGTGGGCTCGTGACACTCAGACCGCGGTATTACTAATTCactgaagagagagagcgagacagagagagagagagagacagagagtgagagaaacgACCGACACCGAGCTCGAGTCTCGTGTCTGTAGCTTGAGCGTCCCGGCCGGACATGGCAGCTGAGGAGAATGAATGCTCGAGCCTCCAGCTCTCCAAACAGAGCTCTGATCCCGTGAGGACGTGGGAGTTGGAGTCCTTCCTGGCCAGTCGCACACTCGGTTTCGTGTCCCGGCTTGATGAGCGCTACAAGTGCCCGGCCTGCGGTGGCGCCATTCTTAACCCCCACCAGACGGGCTGTGGCCACATCTTCTGTGGCAAGTGCATTAGAATGTTCATTGAGAGCAGCGACACATCCAAATGTCCCTTAGATGGCATTTTGATCAAGCCGGAGGAGGTTTTTCAAGACAACTGCTGTAAAAGAGAACTACTAAATCTTGAAGTTTACTGTAGCAACACTCCAGATTGCACACAAAAGATGCTTCTGTGTGATTTGCAGAAACACCTAAAGCTTTGTCAGTACGAAGCCCTGCAATGCTCCAACCCAGGCTGCACTGACATCCTGTTACGCAAGAATTTACCAGACCACCAGCGAAGCCTCTGTCCCTTTCGCACAGAATTCTGTCGCTACTGCACGAAGCCGTATCCTATTACCCAGCTCCTGGACCATGAAAAGATGTCGTGCCCTGAAGCTGAAGTTCAGTGTCCCAATAACTGCTCTCAGATGGTTAAGAGGCATAAGCTCAAAGGACATGTAGATGAGTGTCCAGAGGTGGAGACAGACTGCATTTATAAGCAATATGGCTGCACAGTCCGAGATAAAAGAAGCAAAGTGAAAGTCCATGAATACACTGAATTTAGCCACCATGTGCTGCTGGTACTGGAGAGCAACAGCAAACTTGCTAAACAGgtaGATCAGCTGCAGCAGGACTTGGCCCTCCAGGAGAGGGAGCTGAAGGAGAGAAACTTGCTTGTTGCTAATCTTAACAGAGAAGTGACCAAGTGTGACAACACATTTTCTGCCATCCAGaGGACAGTGGTGGAGCAGGGGGAGTGTGTCTCCAGCGTTAAACAGGAGCTGCAGGAGCTCCGCAGTGTTCTGGATGCTGAGCTGGCTAAAGAGGAGCTGAATGCCCTCCGAGTTTCTCTCAACTCTCTCAGACAGCAAGTGGCAATGACGCAGAGCCTCAGAGATCACCTGGGAGCTTTAGGGCAGACGTGTCAGCGTCACACTCGACTCTTGGACATCCACGTGGAGCAGCTGCAGTGCAACGAGCAACGTTTTCGCCAGCTTGAGTCCACATCGTATGATGGAAAGCTCATCTGGAAGGTTCACGACTACCAGCGCAGAAAAGATGCCGGTGCGCCGCTCAACTCGCCGCCTTTCTACACCGGCCGCAGCGGCTACAAGCTGAGCGTCCGCGTGTATCCTGATGGGGAAGGAAGCGCCCGGGGCACGCACCTCTCCCTCTACGTCATGGTGATGAGAGGCGACTTCGACTCGCTGCTGCCGTGGCCGTTCCGCCAGAGCATCACGCTGACCGTGCTGGACCAGAGCGGCTCACGCAATCACATCAGCTGCAGCTTCAACCCCGACACCAACAAAGAGAGTTTCCGCAGACCCACGGCCGACAGCAACGCCGCTTTAGGGTTCTCCCGCTTCATCTCTCACACTGATCTGGAAGGTCCCCGAAATGCAGTCTACGTACGAGACGACACACTGTTTATCAAAGTCAAGGTGGACACAACAGGGTTGGAGGATTTCTAGTGTATTCTGGGAGAGTGGATCTAGTAAAGCTGGCCtttataagatttttttcagGATATGAAAACAAATAGTCAACTCCAAAATTAATGGCACCCTTCATGACAATGTACAAAAATGACTACCCCCTGTAATGACTGATAAACACTGGTTTAAAAATTATTGGCATCCCcacaattaatatttagtgAATCCACTCttggagagaataaaagagttttttttccctgtaatgtctaacaggATTGGAGACACGTGTAAGGGGAATCTGGATGATTCCATCATGTACCACATTTCAGGCTCTTTTATATgcttaggtttgtgcatgtgaacATCATCTTCAATTCAGATTACAGTTTTGAATagggttcaaatccagagacttttttttttaggcagtAGAGATAGGCTTTTGATTTGTTCCATAACAATTTGTGTTGATACGGAGGTCATTATCTTGTTGCTTTGACCTCTTGGTAGAGCCAACCATGTTTTGCTATCAGGTgctctttcttgtttttccttGTCTCATTTTTGGTTACATAGCCAGAAAGTTAGTGCGCAATGCTTCtaaacagcttgttgttatggAGATGGTGTCTACTAGCTGATTTTCAAATATTACAATCCCAAATATTCCCGATGATGACTGATTTTTACATATGTGAAAACTCATATTTATATGCAGAGGAACTTGTCAGACTTGTCAAATAATAGAGTTCCTGGAGAATTaaagcaatttttattttttttcctggatgatttttttttagttttcactGCTAGGTGCAAATAATTTTGCCATAAATTATTTGAGAgatatttttaaacactttttttaattaatggagAAAATTAAAGTATAATCTCCTGATTCAGTGGAAGTATTGAATCATGGTGCATTACActgattttttaattaacatttaatgttttccccattctcttgaagggtgccTGTAATTCCAGAGCAGACTAAGTTATTTTCAGCCACAGattaagttatttttttttattgtgaatttgccaaaaaatgaggaaataacTCAGAGGGGAAGCTGAGACACGGTAGCTGATTGTGGTTTCTATAAAagtctgtattttcatttttatacgtCATGGTTATTATAAATGACATGCTGTGTGATTTTCACAAATAAAGATTTGGTGCATCTTCA

Function

NR:

description
PREDICTED: TNF receptor-associated factor 5-like

GO: NA

KEGG:

id description
K09849 TRAF5; TNF receptor-associated factor 5

RNA

RNA id representative length rna type GC content exon number start site end site
TU217059 False 227 lncRNA 0.56 2 17351380 17352308
TU217060 False 187 lncRNA 0.46 2 17348570 17348848
XM_026927769.2 True 3094 mRNA 0.46 11 17342815 17352369

Neighbor

gene id symbol gene type direction distance location
tle2a LOC108271319,LOC108430092,LOC107593318 coding downstream 234992 17072405 ~ 17107823 (-)
LOC113532093 LOC108271243,LOC108430097,LOC107676979,LOC107717980,LOC107586407,LOC107719556,LOC107593324 coding downstream 436676 16894004 ~ 16906139 (-)
ubxn6 ubxn6 coding downstream 546437 16786676 ~ 16796378 (-)
scamp4 scamp4,scam4,LOC108270895,LOC106584398 coding downstream 570286 16767043 ~ 16772529 (-)
pias4a pias4,pias4a,LOC107586389,LOC107655204,LOC107596878 coding downstream 577849 16752907 ~ 16764966 (-)
rcor3 rcor3,LOC106564802,LOC106585063 coding upstream 3395 17355764 ~ 17363731 (-)
pex6 pex6,LOC104944420,LOC107662915 coding upstream 70958 17423327 ~ 17436742 (-)
tm4sf4 tm4sf4 coding upstream 152223 17504592 ~ 17507043 (-)
hps3 hps3 coding upstream 195527 17547896 ~ 17568551 (-)
si:ch211-284e20.8 LOC108270536 coding upstream 220818 17573187 ~ 17576080 (-)
G183333 NA non-coding downstream 61202 17281253 ~ 17281613 (-)
G183276 NA non-coding downstream 150583 17189361 ~ 17192232 (-)
G183166 NA non-coding downstream 389822 16911718 ~ 16952993 (-)
G183170 NA non-coding downstream 493555 16846429 ~ 16849260 (-)
G183145 chaf1a,LOC107679837,LOC107717976,LOC107593329 non-coding downstream 563860 16778017 ~ 16778955 (-)
G183376 LOC107583667,LOC106959365 non-coding upstream 39322 17391691 ~ 17392117 (-)
G183385 NA non-coding upstream 54607 17406976 ~ 17407422 (-)
G183399 NA non-coding upstream 100501 17452870 ~ 17453109 (-)
G183400 NA non-coding upstream 100849 17453218 ~ 17453463 (-)
LOC117598411 wwtr1 non-coding upstream 101693 17454062 ~ 17455608 (-)
zgc:172076 LOC108271265,LOC108411951 other downstream 561 17245772 ~ 17342254 (-)
micos13 c10h19orf70,cunh19orf70 other downstream 1063958 16274882 ~ 16278857 (-)
G182210 NA other downstream 1650465 15690774 ~ 15692350 (-)
lama3 LOC108270685 other downstream 2763068 14550906 ~ 14579747 (-)
tnfaip8l1 tnfaip8l1,LOC107702643,LOC107727554,LOC107698600 other downstream 2835205 14497150 ~ 14507610 (-)
trnav-uac_6 NA other upstream 1963750 19316119 ~ 19316374 (-)
G184716 rps15,LOC107685215,LOC107578086 other upstream 2342893 19695262 ~ 19697709 (-)
dda1 dda1,LOC107685208,LOC105913185,LOC105939318 other upstream 2353713 19706082 ~ 19712597 (-)
elavl1b LOC108270814,LOC108437281,LOC103034406,LOC105889513 other upstream 2830673 20183042 ~ 20192143 (-)
mob3c mob3c,LOC108270829,LOC103027889,LOC108438648,LOC106613547,LOC106574029,LOC107572948 other upstream 3570926 20923295 ~ 20929955 (-)

Expression


Co-expression Network