trnav-uac_6


Basic Information

Item Value
gene id trnav-uac_6
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 19316119 ~ 19316374 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU218309
GTAGCGGTCATCACATCTGCTTTACACGCAGAAGGTCCTGGGTTCAACCCCCAGTGGAACCATGCCTTTGCAATGTGAAGTATATGTGGTCTTGTCATTATCCCCAGTAAGGGGGAATACCTGAGCTCTTATAGTAAGGAAGCATGCAGTATTTGCACTTATGAATTCAAGATCATTaagttataaaaacaaaaccccATCACCTACCTCAATCTTTAAGCGTTCTCAAGCGATTGACAGTATCC
>trnav-uac_6
GGTTCCATAGTGTAGCGGTCATCACATCTGCTTTACACGCAGAAGGTCCTGGGTTCAACCCCCAGTGGAACCA

Function

GO: NA

KEGG:

id description
ko05322 Systemic lupus erythematosus
ko05034 Alcoholism

RNA

RNA id representative length rna type GC content exon number start site end site
TU218309 True 245 lncRNA 0.43 1 19316119 19316363
trnav-uac_6 False 73 tRNA 0.53 1 19316302 19316374

Neighbor

gene id symbol gene type direction distance location
trnai-uau_4 NA coding downstream 32 19316015 ~ 19316087 (-)
trnav-uac_5 NA coding downstream 1034 19315013 ~ 19315085 (-)
trnav-uac_4 NA coding downstream 2551 19313496 ~ 19313568 (-)
trnav-uac_3 NA coding downstream 3675 19312372 ~ 19312444 (-)
trnai-uau_3 NA coding downstream 3863 19312185 ~ 19312256 (-)
lsm4 lsm4 coding upstream 102310 19418684 ~ 19423950 (-)
ddx49 ddx49,LOC107757937,LOC107747066 coding upstream 107699 19424073 ~ 19429693 (-)
comp comp,LOC107733073,LOC107665851,LOC107680551,LOC107747026 coding upstream 148267 19464641 ~ 19475095 (-)
tmem38a tmem38a,LOC107730482,LOC107702305 coding upstream 160446 19476820 ~ 19483819 (-)
gamt gamt,LOC107747770,LOC107597217,LOC107685360,LOC107757934,LOC107553529 coding upstream 344691 19661065 ~ 19664681 (-)
G184463 NA non-coding downstream 2724 19305312 ~ 19313395 (-)
G184439 NA non-coding downstream 44809 19220825 ~ 19271310 (-)
LOC113526295 NA non-coding downstream 265642 19034294 ~ 19050477 (-)
G184255 NA non-coding downstream 355265 18959249 ~ 18960854 (-)
LOC113530379 NA non-coding downstream 367493 18940102 ~ 18948626 (-)
G184561 pde4c non-coding upstream 83670 19400044 ~ 19403214 (-)
G184576 NA non-coding upstream 116349 19432723 ~ 19432927 (-)
G184577 klhl26,LOC107680559,LOC107747058 non-coding upstream 117063 19433437 ~ 19437580 (-)
G184578 NA non-coding upstream 123334 19439708 ~ 19440069 (-)
G184592 NA non-coding upstream 143472 19459846 ~ 19464541 (-)
traf5 LOC108271110,LOC108411952 other downstream 1963750 17342815 ~ 17352369 (-)
zgc:172076 LOC108271265,LOC108411951 other downstream 1973865 17245772 ~ 17342254 (-)
micos13 c10h19orf70,cunh19orf70 other downstream 3037262 16274882 ~ 16278857 (-)
G182210 NA other downstream 3623769 15690774 ~ 15692350 (-)
lama3 LOC108270685 other downstream 4736372 14550906 ~ 14579747 (-)
G184716 rps15,LOC107685215,LOC107578086 other upstream 378888 19695262 ~ 19697709 (-)
dda1 dda1,LOC107685208,LOC105913185,LOC105939318 other upstream 389708 19706082 ~ 19712597 (-)
elavl1b LOC108270814,LOC108437281,LOC103034406,LOC105889513 other upstream 866668 20183042 ~ 20192143 (-)
mob3c mob3c,LOC108270829,LOC103027889,LOC108438648,LOC106613547,LOC106574029,LOC107572948 other upstream 1606921 20923295 ~ 20929955 (-)
G185706 LOC108270801 other upstream 1974075 21290449 ~ 21324977 (-)

Expression


Co-expression Network