G184577 (klhl26,LOC107680559,LOC107747058)


Basic Information

Item Value
gene id G184577
gene name klhl26,LOC107680559,LOC107747058
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 19433437 ~ 19437580 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU218443
TGCTTCTTTCTGGTATTGTGCTTTCATGGAGTATGACTAGAGTGTCACTGTgataaacaaactaaaataatattcATGCAATAACATACTAGCAGAGAGAAATCAAAGTGTGCTTTGAATAAAAGTCTTGCACATTCTATTAAATTCACTTCACACATTTTCTCTACGTCAAATCAGTCTACAAGGATTACCTTCAAACATTTTGTGCAGCGTGTGTAAattgtgaaggtgtgtgtagcCAATATCTCGTGTCCTATAAACATCCTGAGCCATGTGTTTAATAATAGCTTGTGAGTCATGATGGAAAAAATAGCAATCAATGACCGCAAACtgtttttgtacaaatttaAGCATGTGCCTTATTCGGTACAAATTGTACAGAACAATTGTACAGAAGCTAGAAAATACTTCACTGCAGCAGCCAGTGTTGTTGTTGCAGTATACAAGACTGTTGTAATGACTATACAttcaaataaaaagagaaactgATTCAGTCTTCCTCAGTCCTCACACTTATTTACACAAAGGGATTTTGTTTTTAGTTGTCGTAGGTCAGTTCAGCGCTAGCACTACGACGAGACATTCTGTTAATCCATTACGCTTCTTCATTAAGAGGTAACATCGCAGTGAAAGTACTAAATGCAGTCAACATGTGGATTTTTCAGGGCTGTATTCAGTCCATCAGGTATAAAGTGCATTACGAAATGAATCTGGTCTGCTTACTGACTTTTTGATAGAGATTACAAAAGACTGAGGGAGAAATAGGTAATTATGTAATCGCACCTAGGAACTGGATGTTCTTGAAGGATGAATTAAAATGTCATCGATTAGGAGTCGTATTGTGCTTAGTTACATTTAGAGATCAAAGATAAACTACCTACATTAATTATTTAggtaaaataaatgcacatttagCATGAAACATAGACCATCGCCAGAAGCGCTAATGAGTTgagttattttaaaattatgccATTGCAGAAAGTGTATGAATTCTTGGAGAACAGTAAACACTTCTCTTTCTCCAGGAGCATCTGGATAAATCATTCACTATGTAACTTCAttaataaggtttttttttttctttcagctgtCTTTATAAAGCAACTCTCTGATGTCTTGCAAGCCCTCAATCCAGCGCTATacttcaaaccaaaaaaacaaaaagaaatattcaGAGTGAGAACGTTTGAATGTGCGCAAGCTGGaaaacagaactgaacactGCGATTTTTGTTTCAGACACTTCCCTGTTTGTGATTGGTCCAAATATTACATAGTTGCTTGCATCAGTGCATACCGGAGGAAGTTGTTCGATTCCTAattcatttgtgtttgtatttgtggaAACAGCAGCATGAATTACGTCTCTTCATTGTCTTTCACAATACATCTGATGCATCTTTCACCACTACCACtgttgttctttgtttatttatgctctgtttaacagggttgccaggtctatGTTGCAAAGGCAacccaaaacataaaaaatacaccccatttcaaccatatacactGCTCTTAAAATCTAACGGTGTTATTAGTACCACAAAAATCATtaattcgttcatcttcagtaaaggCAGAGTCGCAGTGTATCTGGAGCCACTAGGCATGAGGtaagaatacaccctggatgggatgccagtccattacagggcaccatgcacacacattcacacgctcATTCACTCCTAGCGGCAAATTAGCATAGTCAGTCCACCTACAGGCAGGTTTTTAGGAGacgagaggaaaccggagaactcGGAGGAAATCCGTACGTACATGCGAAatgccacacagacagtaacccgagcccaggatcgaaccagggaacTTACCATATTGCCAGAagaaacaatacattttaaggaaatgatgtttatataacacttactgtaaatagttctttaggtttaaaaaaaaaaaactagaaaaaaaactatatagaCTAGCTATAAGAAGCCCAATTCACTGATGCACAACAGTAATGTAGAGAGCTAAAGTTGGGACTGGAATTGTGTATTGTGCACTAAAGGCATCCTGCACAAAACATTATATAGTAGCAGGTCAAAATTTCAGATCTAGCTATCTTGTGGCATCATGTAGTCGGCTTTGGCTCTCAATTCCCTCAAAACCATTCTGTAGTCCTAGTTTTTCAGAATGTTCTAGTAAAACATTAATTTAGTAATGTCTGCATGTTCTGCAAgggttcttctttttgtttttcttcttctttttttagtgAAGTATACTGCCGGTTTTGTCCGTTCTATCTGAGACTGATGAGAATGTACATATTAGAGCGCTAATACATGTAGGCTTTAGGCTTTCAAAATAAGAGCTGATGAATCGTGCACATGCTAAGTAATCAACACTTAGCAGAACTCAGcagaaataaaactataatgGTGAGGTCAGCTCTCGCTTATCAGGTTTATATCACTGAACTGATAAACATAACCAACCAAAATGCAACTATTTGAATGATCAGGGggttaaatgtaaaaacaaacaaaaaaaaaacctctcgtAATGTCACCTCACATTTTCCAGCTAAGCGAATCACCTCTGCGTGGCAGTTTGCGGCAGTATTATAGGTGTACAAGCAATTCCGGCGAAGGATTCTGGAAAGTGTAAATCCCTCTCCCACTCATCCATCTCTGTGTTGTAGACTTGGACGATGCTTGTGACGTTATTCAAATGCCAGTTGTATCCTCCGACAACGTAAATCTTTCTGTCTAATAAGCAACAGCCTGCCTCGGACTGGCCTGCACGCATAGGACTAACCGTCGTCCACTGATCTGTCTCCGGAATGTAATATTCCACTGCAAGAACATCGAAGCACCGGTCCACGTGGTCCATTCTTCCTCCAAGAGCATAGACACGCTCGTTTACACTGATCATGGCGTGCAGCACTCGTGGCTCATTCATTGGGCATTTGAAGTCCCACTGGTCTGTGGCTGGATCATAGCAATGAAGAGACTTCTTATCCTCCACGGAAACCCCATATCCCCCCGAGATATAAAGTTTATCTCCACATGTTGCCCCTGCGTGACCCCATATCCTTCTCTTTAGTGAATCCACATACGTCCATTCATTTTTCTTGGGGCAGTAACATTCAACGGATGAAAGGCTGCCTGATCTGTTGCGCCCCCCGGTGGCATACAGCTGTCCTTGCAGGACATTGAGCTGGAACTGAATGCGGCTCTCCTGCATCGGCCTGATGCGCAACCACTGGTTGAGATGGGGGTCGTATCGGAAACAGATGTCCACAGCACCTTCACCGCTGCGGTACTGCAGGTGCTGGCCGCCCACCACGTAAACGAAATTATCAAGAACGGAAACACAGGCGTGGCTGCAGCCTGTCTCCATGTCAGTCAGCTCCTTGAACTGCCTTGCTGTGCTATCAGCCAGGCAGTACACCTTTGCGCTCACTGTACGGTCGTTGTCAGTGTAGGGTGTGCCACCGAAAGCAATAAGCGAGACAATGTCTGACCGAATGATGGTGCGAGGGGACTGCATCTCGTGCTGGCGGAAAGGAAGTATCTGATAATTAAAGGCCTCAAGTAGGTACTGCCTGCACAATACATCCTCCACCATGATGTCCACAGTCTGCACGCGGTCCACCAGCTCGGAGGAGCGCATGAGCGGGAAGCGCACGTGCCGCAGCACCTCGTTCGCTGCGGGACGGCGTGAATCATCGTGTCGAAGCCACCGGATGGCCGCGTGGAACAAATCAATCTCACTACATCCCTTGAGCTTGTTGCTTTGGAGGAAAAACACTAGCCGCTCCATGGGGATATGCAGGAAATCCTCCTCGTCAGCAATCTGCAGGAAGTGGCGGAATGTGAATGCGTCCACTGATTCCTTCAGAGAGGACAAGCTGAAGGCGGCAGCCATCTGACCGATATTCAAACAAGTCTCGACGCTCATGGCTGATTTCAGGAACTCTTCACAGAGCTCCACAACTGGCACCATCTGAAGGAAGACAGCTGCCCCAAGCACATCTTGGATGCAGTCGAGGTCGAGCGTGACCTCAGAGCTATAGGCGAAATCGATGATGTGCTTTAGGCCACGTGCTGACAAGCCCTTAAGCTCAATCGTGGCCTGGTTTGACTCTTTCATCCCACCAGTG

Function

symbol description
klhl26 Orthologous to human KLHL26 (kelch like family member 26).

NR:

description
PREDICTED: 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-4-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU218443 True 4144 lncRNA 0.43 1 19433437 19437580

Neighbor

gene id symbol gene type direction distance location
ddx49 ddx49,LOC107757937,LOC107747066 coding downstream 3744 19424073 ~ 19429693 (-)
lsm4 lsm4 coding downstream 9487 19418684 ~ 19423950 (-)
trnai-uau_4 NA coding downstream 117350 19316015 ~ 19316087 (-)
trnav-uac_5 NA coding downstream 118352 19315013 ~ 19315085 (-)
trnav-uac_4 NA coding downstream 119869 19313496 ~ 19313568 (-)
comp comp,LOC107733073,LOC107665851,LOC107680551,LOC107747026 coding upstream 27061 19464641 ~ 19475095 (-)
tmem38a tmem38a,LOC107730482,LOC107702305 coding upstream 39240 19476820 ~ 19483819 (-)
gamt gamt,LOC107747770,LOC107597217,LOC107685360,LOC107757934,LOC107553529 coding upstream 223485 19661065 ~ 19664681 (-)
abhd8b abhd8 coding upstream 260586 19698166 ~ 19703302 (-)
ano8b ano8,ano8b,LOC107680545,LOC107747324 coding upstream 278878 19716458 ~ 19747538 (-)
G184576 NA non-coding downstream 510 19432723 ~ 19432927 (-)
G184561 pde4c non-coding downstream 30223 19400044 ~ 19403214 (-)
G184463 NA non-coding downstream 120042 19305312 ~ 19313395 (-)
G184439 NA non-coding downstream 162127 19220825 ~ 19271310 (-)
LOC113526295 NA non-coding downstream 382960 19034294 ~ 19050477 (-)
G184578 NA non-coding upstream 2128 19439708 ~ 19440069 (-)
G184592 NA non-coding upstream 22266 19459846 ~ 19464541 (-)
G184598 NA non-coding upstream 50562 19488142 ~ 19488374 (-)
G184646 NA non-coding upstream 95997 19533577 ~ 19551189 (-)
G184653 NA non-coding upstream 111747 19549327 ~ 19602640 (-)
trnav-uac_6 NA other downstream 117063 19316119 ~ 19316374 (-)
traf5 LOC108271110,LOC108411952 other downstream 2081068 17342815 ~ 17352369 (-)
zgc:172076 LOC108271265,LOC108411951 other downstream 2091183 17245772 ~ 17342254 (-)
micos13 c10h19orf70,cunh19orf70 other downstream 3154580 16274882 ~ 16278857 (-)
G182210 NA other downstream 3741087 15690774 ~ 15692350 (-)
G184716 rps15,LOC107685215,LOC107578086 other upstream 257682 19695262 ~ 19697709 (-)
dda1 dda1,LOC107685208,LOC105913185,LOC105939318 other upstream 268502 19706082 ~ 19712597 (-)
elavl1b LOC108270814,LOC108437281,LOC103034406,LOC105889513 other upstream 745462 20183042 ~ 20192143 (-)
mob3c mob3c,LOC108270829,LOC103027889,LOC108438648,LOC106613547,LOC106574029,LOC107572948 other upstream 1485715 20923295 ~ 20929955 (-)
G185706 LOC108270801 other upstream 1852869 21290449 ~ 21324977 (-)

Expression


Co-expression Network