tmem38a (tmem38a,LOC107730482,LOC107702305)


Basic Information

Item Value
gene id tmem38a
gene name tmem38a,LOC107730482,LOC107702305
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 19476820 ~ 19483819 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026934149.2
TGCAGATGAGCTGCAGTATATTAATAGGAGGTTATATGTGTCCAGATCTCTTTGACTCTCAGAGGCTTTGCGCGGACACACCGTCCACGGGCCTTTAACCAGCTCTCTGTACATGTGCTAATACTGCCATCAGCTCCAGATCCGAAACCATGGAGGTACTGGACGCCCTAAATCTGGGCGAAATTGCCCAATATTTCTCAAAAATGGCCATGTTTCCTGTCTTTGATCTAGCCTATTACATCGTGTCCATACTCTACCTCAAGTATGAGCCAGGCTCAGTGGAGGTGTCCCGCAGAAGCCCTGTGGCCTCCTGGCTCTGTGCAATGCTCTACTGCTTTGGGAGCTACATCTTAGCAGACATCATGCTTGGACACAGCCCCATTGACTATTTCCATAATAACAGCCACATCCTCCTGGCCTCAGCTGTATGGTATCTCATCTTCTACTGCCCACTTAACTTGTTCTACAAATGTGTCGCATTCCTGCCCATTAAGCTCGTGCTAGTAGGTATGAAGGAAGTTGTCCGTACTCGCAAAATCGCTGCTGGAGTCCACCATGCTCATCATGCCTATCACCATGGCTAtttcatcatgatcatcactGGTTATGTCAAGGGATCTGGAGTAGCTCTCATGTCAAATTTTGAGCAACTGTTGCGTGGAGTGTGGAGGCCAGAGACCAATGAAATTCTCAACATGTCATTCCCTACTAAAGCCAGTCTGTATGGAGCCATTCTGTTTACACTCCAGGAGGTGCACTGGCTTCCTGTGTCCAAGAGCACCCTTATCTGCATCTTCACTCTTTTCATGGCTACTTCTAAGGTGGTTATGACTGCGCGCCACTCTCACGGCTCTCCCTTCACTCTGGTTGAGTCCTGGGTGTCCCACCTGCTCTTCGGATCTCCTCTTGCTGTTGAAGATGCTCATAATCATCACCACACTCCTCCAGCTGCTGCCTCTGCCCCTGCCTCTCCAGCCAAAACCAAGGAGGAATTGAGCGAAGGCACTCGCAAGAGAAAAGCCAAGAAAGCAGAGTAGACACCCAGCTCATTGttagaagacaaaaaaacaactactGTCTACCCTCAGGCCATTTTTGATACCTGGGTATATAGTCCTTACTGGAAAGATAGTAAAGATTTGATGTTCACTGAttacagtttgttttttaatggtgCTTTAAATGACAGATGACAGACTACGTAGGGACTGTAAATAGTTCACCAATAATTCTCATCCTTCCTgttaatatataatgtttatctCTATTTATTATGTACATTGTAGTCCGTGAGTGGAGCTCCATTCTCCTGTCAGTGGTGAACTATCTTATAGACATAAGCTAAGTCTTTGGATTATTAAACCCAGTGAAAGGTGAAAGTGTCCCTTCCCATTTTGATCAACACATGGCTTCTGAATGAAGCAGAGTACACACTGTACACGGATGCTCTTTATATCATGTTGCATTTGACAGTACAACATTTTAAGAAGTAAATATATTTTCCAATCA

Function

symbol description
tmem38a Predicted to enable potassium channel activity. Predicted to act upstream of or within potassium ion transmembrane transport. Predicted to be located in nuclear membrane and sarcoplasmic reticulum membrane. Predicted to be integral component of membrane. Is expressed in adaxial cell; musculature system; myotome; and somite. Orthologous to human TMEM38A (transmembrane protein 38A).

NR:

description
PREDICTED: trimeric intracellular cation channel type A

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0033017 sarcoplasmic reticulum membrane cellular_component
GO:0031965 nuclear membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005267 potassium channel activity molecular_function

KEGG:

id description
K24013 TMEM38, TRIC; trimeric intracellular cation channel

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026934149.2 True 1509 mRNA 0.45 6 19476820 19483819

Neighbor

gene id symbol gene type direction distance location
comp comp,LOC107733073,LOC107665851,LOC107680551,LOC107747026 coding downstream 1725 19464641 ~ 19475095 (-)
ddx49 ddx49,LOC107757937,LOC107747066 coding downstream 47127 19424073 ~ 19429693 (-)
lsm4 lsm4 coding downstream 52870 19418684 ~ 19423950 (-)
trnai-uau_4 NA coding downstream 160733 19316015 ~ 19316087 (-)
trnav-uac_5 NA coding downstream 161735 19315013 ~ 19315085 (-)
gamt gamt,LOC107747770,LOC107597217,LOC107685360,LOC107757934,LOC107553529 coding upstream 177246 19661065 ~ 19664681 (-)
abhd8b abhd8 coding upstream 214347 19698166 ~ 19703302 (-)
ano8b ano8,ano8b,LOC107680545,LOC107747324 coding upstream 232639 19716458 ~ 19747538 (-)
plvapb plvap coding upstream 282802 19766621 ~ 19769659 (-)
babam1 babam1,LOC107597198 coding upstream 290339 19774158 ~ 19782030 (-)
G184592 NA non-coding downstream 12279 19459846 ~ 19464541 (-)
G184578 NA non-coding downstream 36751 19439708 ~ 19440069 (-)
G184577 klhl26,LOC107680559,LOC107747058 non-coding downstream 39240 19433437 ~ 19437580 (-)
G184576 NA non-coding downstream 43893 19432723 ~ 19432927 (-)
G184561 pde4c non-coding downstream 73606 19400044 ~ 19403214 (-)
G184598 NA non-coding upstream 4323 19488142 ~ 19488374 (-)
G184646 NA non-coding upstream 49758 19533577 ~ 19551189 (-)
G184653 NA non-coding upstream 65508 19549327 ~ 19602640 (-)
G184678 NA non-coding upstream 99001 19582820 ~ 19584663 (-)
G184700 NA non-coding upstream 158432 19642251 ~ 19643132 (-)
trnav-uac_6 NA other downstream 160446 19316119 ~ 19316374 (-)
traf5 LOC108271110,LOC108411952 other downstream 2124451 17342815 ~ 17352369 (-)
zgc:172076 LOC108271265,LOC108411951 other downstream 2134566 17245772 ~ 17342254 (-)
micos13 c10h19orf70,cunh19orf70 other downstream 3197963 16274882 ~ 16278857 (-)
G182210 NA other downstream 3784470 15690774 ~ 15692350 (-)
G184716 rps15,LOC107685215,LOC107578086 other upstream 211443 19695262 ~ 19697709 (-)
dda1 dda1,LOC107685208,LOC105913185,LOC105939318 other upstream 222263 19706082 ~ 19712597 (-)
elavl1b LOC108270814,LOC108437281,LOC103034406,LOC105889513 other upstream 699223 20183042 ~ 20192143 (-)
mob3c mob3c,LOC108270829,LOC103027889,LOC108438648,LOC106613547,LOC106574029,LOC107572948 other upstream 1439476 20923295 ~ 20929955 (-)
G185706 LOC108270801 other upstream 1806630 21290449 ~ 21324977 (-)

Expression


Co-expression Network