G184646


Basic Information

Item Value
gene id G184646
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 19533577 ~ 19551189 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU218532
AGGCCGACTCAGCTGAGAACATACATTTAGACTGCTGCCACTGTTTCATGACCTCGTCCTCGGAGTAGCCTGACATCATAAGCTCATCCTGAAAGGGGCTGTGCCAGATATCGGTGCCATATGAAACAGAAACCATCTCATCTGCCTCACCACTTCTTGTTATATACCTTGTCTGGCAATCAGGCAGCTGTAAAATGGTCTCAGTATGGCTCTCAGTAGTCTGTTCTGTATAACTGGGGTGATCTTCCTGAGATTCCTGAAATTCTTGGGGTTCTTGAGGTTCTGGGTCCTCCAGCAGCTCTAGAAGCTCCTTCTGATGGCTCACAGTGAAAAGAAGTCCAGATACTGTGCTTCCCTCCGAGCATGTTTGATAATCACTAACGTCAGGCACCAAGCATGAAGAGGAGAGGTTCTCAGTTGCATGGTCAGCACTGTAGGTTGACTTTTCTGGTTCTGGAGTAGGATTTTTTGGAGGTGTTGTGTGAAAGAGCTGAAGTTGATTAAGCAAATCCTGAATTTGAACGTGGTCTAGGTCATGTTGTCGTCGATTCTCTGTTGGCCTTTGCCTCGTCTTCTCTAAATTCTTCTCCAGTGGTTCAGGAACATTAGATTCGTTCATCCTCTGTGTATTGTTTGTGTGATCTTCAGCTTTCTGATTTGTGAGATCCTCAACTTCCCGATTTGTGAGTTCTTCAGCTTCCTGACTTGTGAGATTCTCAACTTCTGTTGGTGTAAAGCTTGTGTTGCGAGCCCCATAGTCACTTAATTCATCTAATGGTGTGTCCATGGAGAAAGATCCAGGTTCTTCGATATCTCTAAGTGAACATGCTTCGCTGGAAGAGTCAGACCTCCAGTCCAGAGGAGGGGGCTCTATTGGGTTAAAGGAATCCAGTTCCTCTAGTTTAGAATGGTTCTCAACCTCATCTTTAAATGATGATGCCACCTTATTGTGAGTGATGTCTGTCTGCTTCTCCATGCCAGGTTGGTCAGCGCAATTGGCAAGAAAGATAAAGGTTTTCCGCTCGTCACGGTTCAGCTAAGAAGCCACCCATTTTGCTGCAAAAGTTTCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU218532 True 1070 lncRNA 0.46 2 19533577 19551189

Neighbor

gene id symbol gene type direction distance location
tmem38a tmem38a,LOC107730482,LOC107702305 coding downstream 49758 19476820 ~ 19483819 (-)
comp comp,LOC107733073,LOC107665851,LOC107680551,LOC107747026 coding downstream 58482 19464641 ~ 19475095 (-)
ddx49 ddx49,LOC107757937,LOC107747066 coding downstream 103884 19424073 ~ 19429693 (-)
lsm4 lsm4 coding downstream 109627 19418684 ~ 19423950 (-)
trnai-uau_4 NA coding downstream 217490 19316015 ~ 19316087 (-)
gamt gamt,LOC107747770,LOC107597217,LOC107685360,LOC107757934,LOC107553529 coding upstream 109876 19661065 ~ 19664681 (-)
abhd8b abhd8 coding upstream 146977 19698166 ~ 19703302 (-)
ano8b ano8,ano8b,LOC107680545,LOC107747324 coding upstream 165269 19716458 ~ 19747538 (-)
plvapb plvap coding upstream 215432 19766621 ~ 19769659 (-)
babam1 babam1,LOC107597198 coding upstream 222969 19774158 ~ 19782030 (-)
G184598 NA non-coding downstream 45203 19488142 ~ 19488374 (-)
G184592 NA non-coding downstream 69036 19459846 ~ 19464541 (-)
G184578 NA non-coding downstream 93508 19439708 ~ 19440069 (-)
G184577 klhl26,LOC107680559,LOC107747058 non-coding downstream 95997 19433437 ~ 19437580 (-)
G184576 NA non-coding downstream 100650 19432723 ~ 19432927 (-)
G184678 NA non-coding upstream 31631 19582820 ~ 19584663 (-)
G184700 NA non-coding upstream 91062 19642251 ~ 19643132 (-)
G184712 NA non-coding upstream 133558 19684747 ~ 19687470 (-)
G184714 NA non-coding upstream 141641 19692830 ~ 19693105 (-)
G184715 NA non-coding upstream 142065 19693254 ~ 19693456 (-)
trnav-uac_6 NA other downstream 217203 19316119 ~ 19316374 (-)
traf5 LOC108271110,LOC108411952 other downstream 2181208 17342815 ~ 17352369 (-)
zgc:172076 LOC108271265,LOC108411951 other downstream 2191323 17245772 ~ 17342254 (-)
micos13 c10h19orf70,cunh19orf70 other downstream 3254720 16274882 ~ 16278857 (-)
G182210 NA other downstream 3841227 15690774 ~ 15692350 (-)
G184716 rps15,LOC107685215,LOC107578086 other upstream 144073 19695262 ~ 19697709 (-)
dda1 dda1,LOC107685208,LOC105913185,LOC105939318 other upstream 154893 19706082 ~ 19712597 (-)
elavl1b LOC108270814,LOC108437281,LOC103034406,LOC105889513 other upstream 631853 20183042 ~ 20192143 (-)
mob3c mob3c,LOC108270829,LOC103027889,LOC108438648,LOC106613547,LOC106574029,LOC107572948 other upstream 1372106 20923295 ~ 20929955 (-)
G185706 LOC108270801 other upstream 1739260 21290449 ~ 21324977 (-)

Expression


Co-expression Network