G183145 (chaf1a,LOC107679837,LOC107717976,LOC107593329)


Basic Information

Item Value
gene id G183145
gene name chaf1a,LOC107679837,LOC107717976,LOC107593329
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 16778017 ~ 16778955 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU216803
CtcggtgtgtctgtgtgtttgggtttggtTGGTCCTGACTTGCGGGGTTTATGGGTTAACCAGTCCTTTAGGCAGTTGAGAGTGCCATCTGGGTCTGTCAGGTATCGATCTAGCTCCTCTAGAACTGCCTCTTCACACTGCACTCGGGTAAGTGGGGCCAAAGACATATGTTCTTTGATTTCAAATGGCGCAAACTTTCCACAGACGGATGCCAGAGTTTTTGGTGCTAACTGAGGCTTGGGTTTCTGTAGGAATCGAGTGATCTCAGCCTTTTCTGCTTTGATTCTctctttctcttccttcaaccgtttttcctcttctttctttctcttctcttcaagTTTAGCcTCAATCTTCACTTTACGCTGCTCTTCCTTTGcctgctgtctctctgccttCTCTTTGTCGTGCTTTTCCCTTTTCTCTCGCCGTTCCctttcctccttctctttcttctcttgtttctctttcttcatctcctccttctgtctccgtgcttcctctcttttcttctctttggcAGCTCTGGCCTCCTGTTTCTGCCGCTCTTTCTCCTCTCGTTGTCGCTGCTTCTCTTCCAGTTCTTGA

Function

symbol description
chaf1a Predicted to be involved in nucleosome assembly. Predicted to act upstream of or within DNA repair and DNA replication. Predicted to be part of CAF-1 complex. Predicted to be active in nucleus. Is expressed in several structures, including eye; pectoral fin; pharyngeal arch 3-7 skeleton; somite; and ventricular zone. Human ortholog(s) of this gene implicated in colon cancer; high grade glioma; neuroblastoma; and systemic lupus erythematosus. Orthologous to human CHAF1A (chromatin assembly factor 1 subunit A).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU216803 True 588 lncRNA 0.48 4 16778017 16778955

Neighbor

gene id symbol gene type direction distance location
scamp4 scamp4,scam4,LOC108270895,LOC106584398 coding downstream 5488 16767043 ~ 16772529 (-)
pias4a pias4,pias4a,LOC107586389,LOC107655204,LOC107596878 coding downstream 13051 16752907 ~ 16764966 (-)
map2k2a map2k2,LOC108271291,LOC108430106,LOC107586388,LOC107729695,LOC107655207,LOC107596877 coding downstream 28147 16738248 ~ 16749870 (-)
zbtb7a LOC108270628 coding downstream 43344 16718032 ~ 16734673 (-)
tcf3b LOC100305065,LOC108430108 coding downstream 75889 16681100 ~ 16702128 (-)
ubxn6 ubxn6 coding upstream 7721 16786676 ~ 16796378 (-)
LOC113532093 LOC108271243,LOC108430097,LOC107676979,LOC107717980,LOC107586407,LOC107719556,LOC107593324 coding upstream 115049 16894004 ~ 16906139 (-)
tle2a LOC108271319,LOC108430092,LOC107593318 coding upstream 293450 17072405 ~ 17107823 (-)
rcor3 rcor3,LOC106564802,LOC106585063 coding upstream 576809 17355764 ~ 17363731 (-)
pex6 pex6,LOC104944420,LOC107662915 coding upstream 644372 17423327 ~ 17436742 (-)
G182511 NA non-coding downstream 454073 16322185 ~ 16323944 (-)
G182494 NA non-coding downstream 509587 16267386 ~ 16268430 (-)
G182493 NA non-coding downstream 517701 16260058 ~ 16260316 (-)
G182372 NA non-coding downstream 696714 16074631 ~ 16081303 (-)
G182341 NA non-coding downstream 741595 16036209 ~ 16036422 (-)
G183170 NA non-coding upstream 67474 16846429 ~ 16849260 (-)
G183166 NA non-coding upstream 132763 16911718 ~ 16952993 (-)
G183276 NA non-coding upstream 410406 17189361 ~ 17192232 (-)
G183328 NA non-coding upstream 495263 17274218 ~ 17376098 (-)
G183333 NA non-coding upstream 502298 17281253 ~ 17281613 (-)
micos13 c10h19orf70,cunh19orf70 other downstream 499160 16274882 ~ 16278857 (-)
G182210 NA other downstream 1085667 15690774 ~ 15692350 (-)
lama3 LOC108270685 other downstream 2198270 14550906 ~ 14579747 (-)
tnfaip8l1 tnfaip8l1,LOC107702643,LOC107727554,LOC107698600 other downstream 2270407 14497150 ~ 14507610 (-)
LOC113532209 LOC108271183 other downstream 2284158 14487120 ~ 14493859 (-)
zgc:172076 LOC108271265,LOC108411951 other upstream 466817 17245772 ~ 17342254 (-)
traf5 LOC108271110,LOC108411952 other upstream 563860 17342815 ~ 17352369 (-)
trnav-uac_6 NA other upstream 2537164 19316119 ~ 19316374 (-)
G184716 rps15,LOC107685215,LOC107578086 other upstream 2916307 19695262 ~ 19697709 (-)
dda1 dda1,LOC107685208,LOC105913185,LOC105939318 other upstream 2927127 19706082 ~ 19712597 (-)

Expression


Co-expression Network