ubxn6 (ubxn6)


Basic Information

Item Value
gene id ubxn6
gene name ubxn6
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 16786676 ~ 16796378 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026919126.2
GAAATTCTGTATTTCCTGTCCGTGCGCCGCGCCTCCTTCTGTTGATGTAAACAGATTACTTTGCTGGTTTTATATGTGCagacaaacatttctttctgttATAATATTACCACACTAACAATGAAGAAGTTTTTCGAAGACATTAAAaaggatataaaatttaaatcgGCGGGACCAGGGAAGAAACTCACTGAAGACACCAGCACTAAGGCTCCAGCAGGGCAGACGGTTAACCAGGCGAAGCCTCGTGCTGCCCCCAATGAGAGCACACAGAGAGCTGGAGCTGCTGCCCTGGCCAGGATCGAGCAGCAGCACAAACCCCGACCACACACATCACAGGACGCCATCAGAAACCAGGtgaaGAGGGAGCTTGAGGCGGAGGCTGCAGCCACAGCAGTGGAACAAAAAAGCACAGATATAGAGGGTTCTaatgttccagtgaaggaggctgCATGTTTTTCCGTGTCCGGAGTGTACTTCATCTGCCCTCTGACTGGGGAAACGTTAAagaagagcgagagagagacacgcaTCAAGGAGGCCATTCTTCTGagatTCTCTGAGAATCCAGTGGAGGCTTCTATTATGATGATTCACACTTTTAacaaggacagagagaaagtgaagggTGCCATCGACATCATCAGCAAGTACATTGATAATATCTGTAAGAATCCAACAGAAGAGAAGTACAGGAAGATTAAAGTCAGCAACAAAGTCTTCCAGgaGAAGGTGAGTGTGATCGAGGGGAGTCGGGAGTTCTTGCAGGCTCTGGGGTTTGAGAGCACTGTGGTGCCAGTGGAAGGACAAGagaacccagaagagtTTTTGGTTTTGGCTGAGCAGGATGCTGcagctctggaccagatgaaggaaaagaaggagCAGCTGCAGAAGGGAGAACCTGTCCGAGCCAAGCTGGACCGCCAGGCACAAGCCTTCAGACCCTCACAGCACGCAACACGCTTCGAGCTGCCACCAGACTTTTACAACCTGACTGCAGAAGAGCTGAAACGAGAGCAGCAGCTTAAAAGCGATTTAGTTGAAAGAAATGCCATGCTGCGAACGAAAGCCATGCGGGAAAAAGAGGAGCAAAGGGAGAAAAGGAAGTATAACTATGCCCTACTGAGAATTCGGTTACCAGATGGAAATATCCTACAGGGGACTTTCTTGGCGTGGGACAAGGTAGCAGTGGTGTACCAGTTTGTGCGTGACTCCCTGGAGAACGGCTGGCAGCCCTTTGAGCTCATGGCACCAGGAAGCCAGAAACTAAAGGAAGACAAGGAAGTGGCACTAAATGAATGCAACCTTgTCCCTGCAGCTCTGTTGACCTTCTCCTGGGATGCTGCAGTCCAAGCGGACATTGCCGCAGCTGGAGGAAAGAGCAGCTCTGTGCTGAAGCCAGAACTGCTAAAGAATTTGCAGACCCTGAGCTGAACATCAACTCTGCTGCCCTGCTGTCCTCTGCTCACCCTGCCTGGGCCTCCTGAGCCCactctgctgttatagcagctgtctTTTCCTGCTCGAGTGCACACCACCGTGTTCAGTTATCAGAATGCTGATAGTGTTACAGGATAAGAATCATTCACAAGATTCGTGTTTAGTCAGTGCTGAAGCAGCTAGGGCTCATTTGGTCAGGAGAGCTAGCACGACTGAGCAAAATGTCATCCTATCCAACTGCCCCTGATCGTCTGAAAAGGATTTTTGTGATGTAGTGTTGTATTCATATTCCAAAGAAGGAAAATTTCTATTGCACTGTAATTCTGTCCATATTACTGTCCCTGTCAATTGCAACTTATCTTTTACAAGAGATTATGTCCAAGCTTCACTATTGTTAATGAATTGTTCATATGTGAGATGATTACTTTTCAGcctactttaacacacacacacaccaaaaaaaaaattctatagcATCCCTCTGTTGATAAAGAATGATGGCAAATGTACTTAActcaaatgtaaaatgtcaaatgttttttttttttttttttttaaagatgtctAACTAGTTCACCTAGTCAACATTATTCTTACTtgctttttcaaatttaaaaggaagagatttcatatttaaaagtaAGGAATAAGGAATAAATTAATGTTAACATTGTTTTCTGTTCTAAACTCTTTCTAGAAAGCAGGACAACAGCCTACCTCCTCACAAACCAGTAAACCATTTTTGTGAGAGAACCCTAAACACTAGATAGACTGTAATTTGCTTGCCCCAGTAGCTAGTAATGCATCTCTCACTGCTTTCCCAACCGCAGAATGAAACACGCTAGTTAGTTTTGTTTCCGTTATAGGATGACAAAGAATGTAATGGATAGAACAACGCCACGTTAAATTTCCATGCGCTATAATTGCATTGTTCTGTGTTCGTCTGCCTAATTAAATCTACTGTAATAAAGTTCAAGGATGCATTGTCAAA

Function

symbol description
ubxn6 Orthologous to human UBXN6 (UBX domain protein 6).

NR:

description
PREDICTED: UBX domain-containing protein 6

GO: NA

KEGG:

id description
K14011 UBXN6, UBXD1; UBX domain-containing protein 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026919126.2 True 2434 mRNA 0.45 11 16786676 16796378

Neighbor

gene id symbol gene type direction distance location
scamp4 scamp4,scam4,LOC108270895,LOC106584398 coding downstream 14147 16767043 ~ 16772529 (-)
pias4a pias4,pias4a,LOC107586389,LOC107655204,LOC107596878 coding downstream 21710 16752907 ~ 16764966 (-)
map2k2a map2k2,LOC108271291,LOC108430106,LOC107586388,LOC107729695,LOC107655207,LOC107596877 coding downstream 36806 16738248 ~ 16749870 (-)
zbtb7a LOC108270628 coding downstream 52003 16718032 ~ 16734673 (-)
tcf3b LOC100305065,LOC108430108 coding downstream 84548 16681100 ~ 16702128 (-)
LOC113532093 LOC108271243,LOC108430097,LOC107676979,LOC107717980,LOC107586407,LOC107719556,LOC107593324 coding upstream 97626 16894004 ~ 16906139 (-)
tle2a LOC108271319,LOC108430092,LOC107593318 coding upstream 276027 17072405 ~ 17107823 (-)
rcor3 rcor3,LOC106564802,LOC106585063 coding upstream 559386 17355764 ~ 17363731 (-)
pex6 pex6,LOC104944420,LOC107662915 coding upstream 626949 17423327 ~ 17436742 (-)
tm4sf4 tm4sf4 coding upstream 708214 17504592 ~ 17507043 (-)
G183145 chaf1a,LOC107679837,LOC107717976,LOC107593329 non-coding downstream 7721 16778017 ~ 16778955 (-)
G182511 NA non-coding downstream 462732 16322185 ~ 16323944 (-)
G182494 NA non-coding downstream 518246 16267386 ~ 16268430 (-)
G182493 NA non-coding downstream 526360 16260058 ~ 16260316 (-)
G182372 NA non-coding downstream 705373 16074631 ~ 16081303 (-)
G183170 NA non-coding upstream 50051 16846429 ~ 16849260 (-)
G183166 NA non-coding upstream 115340 16911718 ~ 16952993 (-)
G183276 NA non-coding upstream 392983 17189361 ~ 17192232 (-)
G183328 NA non-coding upstream 477840 17274218 ~ 17376098 (-)
G183333 NA non-coding upstream 484875 17281253 ~ 17281613 (-)
micos13 c10h19orf70,cunh19orf70 other downstream 507819 16274882 ~ 16278857 (-)
G182210 NA other downstream 1094326 15690774 ~ 15692350 (-)
lama3 LOC108270685 other downstream 2206929 14550906 ~ 14579747 (-)
tnfaip8l1 tnfaip8l1,LOC107702643,LOC107727554,LOC107698600 other downstream 2279066 14497150 ~ 14507610 (-)
LOC113532209 LOC108271183 other downstream 2292817 14487120 ~ 14493859 (-)
zgc:172076 LOC108271265,LOC108411951 other upstream 449394 17245772 ~ 17342254 (-)
traf5 LOC108271110,LOC108411952 other upstream 546437 17342815 ~ 17352369 (-)
trnav-uac_6 NA other upstream 2519741 19316119 ~ 19316374 (-)
G184716 rps15,LOC107685215,LOC107578086 other upstream 2898884 19695262 ~ 19697709 (-)
dda1 dda1,LOC107685208,LOC105913185,LOC105939318 other upstream 2909704 19706082 ~ 19712597 (-)

Expression


Co-expression Network