RNA id: XM_026919126.2


Basic Information

Item Value
RNA id XM_026919126.2
length 2434
RNA type mRNA
GC content 0.45
exon number 11
gene id ubxn6
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 16786676 ~ 16796378 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAAATTCTGTATTTCCTGTCCGTGCGCCGCGCCTCCTTCTGTTGATGTAAACAGATTACTTTGCTGGTTTTATATGTGCagacaaacatttctttctgttATAATATTACCACACTAACAATGAAGAAGTTTTTCGAAGACATTAAAaaggatataaaatttaaatcgGCGGGACCAGGGAAGAAACTCACTGAAGACACCAGCACTAAGGCTCCAGCAGGGCAGACGGTTAACCAGGCGAAGCCTCGTGCTGCCCCCAATGAGAGCACACAGAGAGCTGGAGCTGCTGCCCTGGCCAGGATCGAGCAGCAGCACAAACCCCGACCACACACATCACAGGACGCCATCAGAAACCAGGtgaaGAGGGAGCTTGAGGCGGAGGCTGCAGCCACAGCAGTGGAACAAAAAAGCACAGATATAGAGGGTTCTaatgttccagtgaaggaggctgCATGTTTTTCCGTGTCCGGAGTGTACTTCATCTGCCCTCTGACTGGGGAAACGTTAAagaagagcgagagagagacacgcaTCAAGGAGGCCATTCTTCTGagatTCTCTGAGAATCCAGTGGAGGCTTCTATTATGATGATTCACACTTTTAacaaggacagagagaaagtgaagggTGCCATCGACATCATCAGCAAGTACATTGATAATATCTGTAAGAATCCAACAGAAGAGAAGTACAGGAAGATTAAAGTCAGCAACAAAGTCTTCCAGgaGAAGGTGAGTGTGATCGAGGGGAGTCGGGAGTTCTTGCAGGCTCTGGGGTTTGAGAGCACTGTGGTGCCAGTGGAAGGACAAGagaacccagaagagtTTTTGGTTTTGGCTGAGCAGGATGCTGcagctctggaccagatgaaggaaaagaaggagCAGCTGCAGAAGGGAGAACCTGTCCGAGCCAAGCTGGACCGCCAGGCACAAGCCTTCAGACCCTCACAGCACGCAACACGCTTCGAGCTGCCACCAGACTTTTACAACCTGACTGCAGAAGAGCTGAAACGAGAGCAGCAGCTTAAAAGCGATTTAGTTGAAAGAAATGCCATGCTGCGAACGAAAGCCATGCGGGAAAAAGAGGAGCAAAGGGAGAAAAGGAAGTATAACTATGCCCTACTGAGAATTCGGTTACCAGATGGAAATATCCTACAGGGGACTTTCTTGGCGTGGGACAAGGTAGCAGTGGTGTACCAGTTTGTGCGTGACTCCCTGGAGAACGGCTGGCAGCCCTTTGAGCTCATGGCACCAGGAAGCCAGAAACTAAAGGAAGACAAGGAAGTGGCACTAAATGAATGCAACCTTgTCCCTGCAGCTCTGTTGACCTTCTCCTGGGATGCTGCAGTCCAAGCGGACATTGCCGCAGCTGGAGGAAAGAGCAGCTCTGTGCTGAAGCCAGAACTGCTAAAGAATTTGCAGACCCTGAGCTGAACATCAACTCTGCTGCCCTGCTGTCCTCTGCTCACCCTGCCTGGGCCTCCTGAGCCCactctgctgttatagcagctgtctTTTCCTGCTCGAGTGCACACCACCGTGTTCAGTTATCAGAATGCTGATAGTGTTACAGGATAAGAATCATTCACAAGATTCGTGTTTAGTCAGTGCTGAAGCAGCTAGGGCTCATTTGGTCAGGAGAGCTAGCACGACTGAGCAAAATGTCATCCTATCCAACTGCCCCTGATCGTCTGAAAAGGATTTTTGTGATGTAGTGTTGTATTCATATTCCAAAGAAGGAAAATTTCTATTGCACTGTAATTCTGTCCATATTACTGTCCCTGTCAATTGCAACTTATCTTTTACAAGAGATTATGTCCAAGCTTCACTATTGTTAATGAATTGTTCATATGTGAGATGATTACTTTTCAGcctactttaacacacacacacaccaaaaaaaaaattctatagcATCCCTCTGTTGATAAAGAATGATGGCAAATGTACTTAActcaaatgtaaaatgtcaaatgttttttttttttttttttttaaagatgtctAACTAGTTCACCTAGTCAACATTATTCTTACTtgctttttcaaatttaaaaggaagagatttcatatttaaaagtaAGGAATAAGGAATAAATTAATGTTAACATTGTTTTCTGTTCTAAACTCTTTCTAGAAAGCAGGACAACAGCCTACCTCCTCACAAACCAGTAAACCATTTTTGTGAGAGAACCCTAAACACTAGATAGACTGTAATTTGCTTGCCCCAGTAGCTAGTAATGCATCTCTCACTGCTTTCCCAACCGCAGAATGAAACACGCTAGTTAGTTTTGTTTCCGTTATAGGATGACAAAGAATGTAATGGATAGAACAACGCCACGTTAAATTTCCATGCGCTATAATTGCATTGTTCTGTGTTCGTCTGCCTAATTAAATCTACTGTAATAAAGTTCAAGGATGCATTGTCAAA

Function

GO: NA

KEGG:

id description
K14011 UBXN6, UBXD1; UBX domain-containing protein 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU216803 lncRNA downstream 7721 16778017 ~ 16778955 (-) True G183145
TU216023 lncRNA downstream 462732 16322185 ~ 16323944 (-) True G182511
TU215999 lncRNA downstream 518246 16267386 ~ 16268430 (-) True G182494
TU215998 lncRNA downstream 526360 16260058 ~ 16260316 (-) True G182493
TU215857 lncRNA downstream 705373 16074631 ~ 16081303 (-) False G182372
TU216838 lncRNA upstream 50051 16846429 ~ 16849260 (-) True G183170
TU216840 lncRNA upstream 50051 16846429 ~ 16849260 (-) False G183170
TU216841 lncRNA upstream 50051 16846429 ~ 16849260 (-) False G183170
TU216833 lncRNA upstream 115340 16911718 ~ 16952993 (-) True G183166
TU216954 lncRNA upstream 392983 17189361 ~ 17192232 (-) True G183276
XM_026913473.2 mRNA downstream 14147 16767043 ~ 16772529 (-) True scamp4
XM_026925496.2 mRNA downstream 21710 16752907 ~ 16764966 (-) False pias4a
XM_034308808.1 mRNA downstream 21873 16752907 ~ 16764803 (-) True pias4a
XM_026920943.2 mRNA downstream 36806 16738248 ~ 16749870 (-) True map2k2a
XM_026913372.2 mRNA downstream 52003 16718032 ~ 16734673 (-) True zbtb7a
XM_026923254.2 mRNA upstream 97626 16894004 ~ 16906139 (-) True LOC113532093
XM_026919325.2 mRNA upstream 276027 17072405 ~ 17107823 (-) True tle2a
XM_034308713.1 mRNA upstream 535665 17332043 ~ 17342254 (-) True zgc:172076
XM_026927769.2 mRNA upstream 546437 17342815 ~ 17352369 (-) True traf5
XM_026927994.2 mRNA upstream 559386 17355764 ~ 17363731 (-) False rcor3
TU216003 other downstream 507819 16275866 ~ 16278857 (-) False micos13
TU216001 other downstream 507867 16274882 ~ 16278809 (-) True micos13
TU216002 other downstream 507867 16275668 ~ 16278809 (-) False micos13
TU216000 other downstream 507867 16275866 ~ 16278809 (-) False micos13
TU215666 other downstream 1094326 15690774 ~ 15692350 (-) True G182210
TU216998 other upstream 449394 17245772 ~ 17342243 (-) False zgc:172076
trnav-uac_1 other upstream 2513633 19310011 ~ 19310083 (-) True trnav-uac_1
trnav-uac_2 other upstream 2515433 19311811 ~ 19311883 (-) True trnav-uac_2
trnai-uau_3 other upstream 2515807 19312185 ~ 19312256 (-) True trnai-uau_3
trnav-uac_3 other upstream 2515994 19312372 ~ 19312444 (-) True trnav-uac_3

Expression Profile