RNA id: XM_026923254.2


Basic Information

Item Value
RNA id XM_026923254.2
length 2338
RNA type mRNA
GC content 0.45
exon number 8
gene id LOC113532093
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 16894004 ~ 16906139 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTGTTCTCAGTGCGAGGCGTGTGGTGTGAGGGTATAAGCCGGGGCTAGCACTGAGTGAAGCTCACTcgctcactccctcactcccttcACTCACTCCCTCGAGTCGCATTCCTCTGATACGCATCGGGAGCAGCCGCTCACATACCTGTCATATTCCTCACCAAAGCTGCACTTCCGCGAGTCATGCTGCTCGGCTGAGCGAAAATAATGCGAACGAGCTCGGCTAATATCGGCGCTTTTGGACTTTTCGATGAAGACAAAAAGTTTCTGATACAACTCCAGTTCACCTGAGCAAAAGATGGATCGTGTTTCCCACCGAGACTCACAGACCGTGTAAAGCTCCCGGAACAGGTGTGACAGCGAATGAAGGGAAGATGGGGGGCTGCTGGAGATGGTGCTACCAAACCTGCACTTGCTGTCTGAGCGAGGAGGAACGGAAATCAATCGCTATAGACAAGGAAATCCGGAGAATTCTCGCTgaacagaagaagagagaacGCAGAGAAATAAAAGTGCTCCTACTGGGCACGGGAGAGAGTGGGAAAACTACTTTTATCAAGCAGATGAGGATTATCCATGGGAAGGGATTCTCTGAGGAAGACAGACGCGCCTTCGCAAAACTGGTTTTCCAGAACATCTTCACAGCAATTAAGGCAATGACAGCGGCCATGTCAGCCCTCAGGATTCCCTACACCAACCAACAGAACGAGGCATATGCTCAACGGATTCAAGCCGTAGATATCCATCAGGTGAACCACCTGGAGCGAGTTTATGTGGATGCTATTCAGTGCCTGTGGGCAGACACCGGACTTAAAATCTGCTACAGTCGCCGGCGAGAGTACCAACTACTGGACTCCACTGAATACTTCATGACGAACTTGGAACGCATCGCAGCCCAGGACTACATCCCCACTTCTCAGGATGTGCTGCGGGTGCGTTTTCCAACCACCGGCATCAACGACTACTCCTTCGTGGTGGAGAAGATCACACTCAGGATTGTGGACGTCGGGGGGCAGAAATCAGAGAGGAGGAAATGGATCCACTGCTTTGAGAATGTGACGTCGCTCATCTTCTTGGCTTCGCTTAGCGAGTACGATCAGGTCCTGGAGGAGAACAACAGAGATAACCGTATGGAGGAGAGTCTGACGCTTTTCTACACTACCATCCACTCACCCTGGTTTGCCAATGCCTCTATCATCCTCTTTCTCAATAAAATGGACATCTTGGCTGAGAAGATCAAGACGTCCGACCTGCAGAACTACTTCCCAAGGTTCCAAGGCAAGAAACGGGACCCCGATTCAGCCATGGAGTTCATTCGTGAGATGTACAAGCAGCAGGCGCAGAACCCTGAGAAGAAGGAAAACAAGACCATTTACCCACACTTCACCTGTGCCACCGACACCAACAACATCCGCATGGTGTTCAACGATGTGAAAGACACAGTGCTTATCAAGTCTCTGCAGGAATATGGTGTGCTGTGACCAGGCCAGGTCATGACTGCTTCTGAAGATTGTGGATAAACCCACCTGCCTCCTTCATGTTTTTCCAGTGCCATTTGTCGTTTGTCAGACAGTTCATTTGTCTAATTGTTTTGGGTGGTAGACATGGTACAGACATCTCCAGACATTACAATAACGGAATGGGCCAAAGCTTGGCTGAAGaaatctttatggtttctcagCCATGCGACAATgaggacagatttttttttttttctcttcctgctTGTATGCAACACAACAATTCTGTGGTGAAAATGAAAACGCTCTGCATTTTGCATTCGACTTCTGCAGTGCCTGCTGGAGGGACTACGTTTCACTGTACACACAAAGTGATCCACGTAGATCGAGAGAAATCTGACTTCTCTCAATAAGAACATtagaatgaattaaaattttttctAGAAAGTGTATATTGACGTCTCTCAAAAGGATGCTGCATATTTGATCAACTTTATTTCTGGGGTTACATGATTTGTTGGTGTTGCGGTTATAACAGAACACACTGTTTGACTATTCAATATCTTTACAGTCAAATATAAGAGACTGCAGGCTGTAAGAGCTCAATTTCTTCCTCTGGGACTAAGTCTTATGTCCTTATCTACAGGGACActtctttttatcattttcatactaTTGTTTtcattctgtaattattttctCAATATGCTCTTTTTAATGAGAGTATAGTTGCTCtctgtataatttatatttatcataTGGTCTTAGTATTGTGTCTAgcaaatgttataaatataggTGCTTATAATCATTTGTATCATGTAGGGTGAGctgaatttgtatttttaagcaACTGAAGATAAAATATCTCAAAGAAA

Function

GO:

id name namespace
GO:0007188 adenylate cyclase-modulating G protein-coupled receptor signaling pathway biological_process
GO:0060158 phospholipase C-activating dopamine receptor signaling pathway biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0005834 heterotrimeric G-protein complex cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0004871 obsolete signal transducer activity molecular_function
GO:0031683 G-protein beta/gamma-subunit complex binding molecular_function
GO:0001664 G protein-coupled receptor binding molecular_function

KEGG:

id description
K04637 GNA15; guanine nucleotide-binding protein subunit alpha-15

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU216838 lncRNA downstream 44744 16846429 ~ 16849260 (-) True G183170
TU216840 lncRNA downstream 44744 16846429 ~ 16849260 (-) False G183170
TU216841 lncRNA downstream 44744 16846429 ~ 16849260 (-) False G183170
TU216803 lncRNA downstream 115049 16778017 ~ 16778955 (-) True G183145
TU216023 lncRNA downstream 570060 16322185 ~ 16323944 (-) True G182511
TU216833 lncRNA upstream 5579 16911718 ~ 16952993 (-) True G183166
TU216954 lncRNA upstream 283222 17189361 ~ 17192232 (-) True G183276
TU217022 lncRNA upstream 368079 17274218 ~ 17376098 (-) True G183328
TU217028 lncRNA upstream 375114 17281253 ~ 17281613 (-) True G183333
TU217060 lncRNA upstream 442431 17348570 ~ 17348848 (-) False traf5
XM_026919126.2 mRNA downstream 97626 16786676 ~ 16796378 (-) True ubxn6
XM_026913473.2 mRNA downstream 121475 16767043 ~ 16772529 (-) True scamp4
XM_026925496.2 mRNA downstream 129038 16752907 ~ 16764966 (-) False pias4a
XM_034308808.1 mRNA downstream 129201 16752907 ~ 16764803 (-) True pias4a
XM_026920943.2 mRNA downstream 144134 16738248 ~ 16749870 (-) True map2k2a
XM_026919325.2 mRNA upstream 166266 17072405 ~ 17107823 (-) True tle2a
XM_034308713.1 mRNA upstream 425904 17332043 ~ 17342254 (-) True zgc:172076
XM_026927769.2 mRNA upstream 436676 17342815 ~ 17352369 (-) True traf5
XM_026927994.2 mRNA upstream 449625 17355764 ~ 17363731 (-) False rcor3
XM_034308946.1 mRNA upstream 449625 17355764 ~ 17363245 (-) True rcor3
TU216003 other downstream 615147 16275866 ~ 16278857 (-) False micos13
TU216001 other downstream 615195 16274882 ~ 16278809 (-) True micos13
TU216002 other downstream 615195 16275668 ~ 16278809 (-) False micos13
TU216000 other downstream 615195 16275866 ~ 16278809 (-) False micos13
TU215666 other downstream 1201654 15690774 ~ 15692350 (-) True G182210
TU216998 other upstream 339633 17245772 ~ 17342243 (-) False zgc:172076
trnav-uac_1 other upstream 2403872 19310011 ~ 19310083 (-) True trnav-uac_1
trnav-uac_2 other upstream 2405672 19311811 ~ 19311883 (-) True trnav-uac_2
trnai-uau_3 other upstream 2406046 19312185 ~ 19312256 (-) True trnai-uau_3
trnav-uac_3 other upstream 2406233 19312372 ~ 19312444 (-) True trnav-uac_3

Expression Profile