RNA id: XM_034308713.1


Basic Information

Item Value
RNA id XM_034308713.1
length 1523
RNA type mRNA
GC content 0.49
exon number 10
gene id zgc:172076
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 17245772 ~ 17342254 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGTGCTTGTGCTGCATTCCTGTCCGTGCACAGTGCACTCCACAATCACACGCTGCAGCCAACGAGAAAGGAtgtggaagagaaagaaagaatggttGATCAAGCCCCCCAAGGAGCACCCTTTGGAGACAAAGTACAGGCCTGTGCTTGAGAGCATGATCCCCCCAGACCCCATGAGCAAGCTTAAACTGAAGAGGGGTTGTCCCAAAGAAGAGTTCCCTAGTCTGGATGGAAACTACACCTGCATGGCCCGTGTGCTTGATCTGCATATGTACACACGCCAGTTCAACCGGGCCACTGAGAGTGGAGTCATCTTTGATGACATCATTCGTCCAGGCCTGGAGGACCTAGGAACAAGCACAGGGCCTTTGACTGTAGGCTGTTTAGCCGGAGATGCTCAGTCCTACATTCTCTTCTGTGACTTTTTTGACCGCATCATTGAAGCCTACCACAGCTACAAGGTGCTCGGTCACGTTACGCAAAAGAGTGACTTCAATTATGACAACCTCAAGGgtgatgaTGACTTTGACCAAGCGTATGCTGTGAGCTGTGAGGTGAGTGCTTCTCGCTGCATTGACGACTTCTGCTTCCCCACACACTGCAGCCGAGGGGAGCGGAGACATCTCCTCACACTGGCCAAAAAAGCTCTGGATCAACTTAGCGAAGAACTCCCAGGCAAGCTTTACTCAATGGAAGAGCTCAACCAAGAGACAGAAGATAAAGGGCTCATTCTGGATGCCCCACCCACCACATTAATGAAGACCGGAGTGGCCCGAGATTGGCCTGATGCACGGGCATTGTGGATGAGTGACAATGGGAGCCTGGCAGTTTGGGTGAACATGGAGGACCATCTGAAACTGGTGTCTTCCAGAAGCGACGCCAATATCCAGGAGGCATTTGCATCTGTGTGCATCAATCTAGTAAAGTTGGAGGCAATGTATAATAAACTAAGGCACCCGTTTATCTGGAAGCCTCACTTGGGCTGGGTGGTGAGCTCACCGGCGGAGGTGGGCACTGGTCTGAAGGCCAGTGTCACTGTCAGGCTGATACACCTGCCTGAGCACAAACACCTGAACAACATCCTGGACAGACTGAGACTTCGCATGGAGGCAGACAACTCATATGGATTGTACAAAATAAGCAACCAACAAACCATTGGACTCACGGAAGTGGAGTTTACACAGCTCGTGGTGGATGGGGTTAAACTTCTCATCAGGATTGAGAAGAGACTGGAGGACAATGCGGGCATTGATGACCTGGTGCCTGCACAGAAGTAGAGTCACCACCCAGCTACAGGACATGTTTTACGGAGACTAGATGCACTGTGCACTGTTATGCGTTGTAGTACTTCTGCTCATGGAGCGCTTTCACAAAGCTATGCATAgttaaatcacatttaaacagtgttctgaaaaagaattttgttattgtttgatttgatttgaatttgatgTGGAGCCCACTGCTCCACTGTATGTACAGGctgttaattaaaatacattacagcacTACTGAATTATCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU217028 lncRNA downstream 50430 17281253 ~ 17281613 (-) True G183333
TU216954 lncRNA downstream 139811 17189361 ~ 17192232 (-) True G183276
TU216833 lncRNA downstream 379050 16911718 ~ 16952993 (-) True G183166
TU216838 lncRNA downstream 482783 16846429 ~ 16849260 (-) True G183170
TU216840 lncRNA downstream 482783 16846429 ~ 16849260 (-) False G183170
TU217060 lncRNA upstream 6316 17348570 ~ 17348848 (-) False traf5
TU217059 lncRNA upstream 9126 17351380 ~ 17352308 (-) False traf5
TU217071 lncRNA upstream 49437 17391691 ~ 17392117 (-) True G183376
TU217080 lncRNA upstream 64722 17406976 ~ 17407422 (-) True G183385
TU217096 lncRNA upstream 110616 17452870 ~ 17453109 (-) True G183399
XM_026919325.2 mRNA downstream 224220 17072405 ~ 17107823 (-) True tle2a
XM_026923254.2 mRNA downstream 425904 16894004 ~ 16906139 (-) True LOC113532093
XM_026919126.2 mRNA downstream 535665 16786676 ~ 16796378 (-) True ubxn6
XM_026913473.2 mRNA downstream 559514 16767043 ~ 16772529 (-) True scamp4
XM_026925496.2 mRNA downstream 567077 16752907 ~ 16764966 (-) False pias4a
XM_026927769.2 mRNA upstream 561 17342815 ~ 17352369 (-) True traf5
XM_026927994.2 mRNA upstream 13510 17355764 ~ 17363731 (-) False rcor3
XM_034308946.1 mRNA upstream 13510 17355764 ~ 17363245 (-) True rcor3
XM_034308903.1 mRNA upstream 81073 17423327 ~ 17436742 (-) True pex6
XM_026924061.2 mRNA upstream 162338 17504592 ~ 17507043 (-) True tm4sf4
TU216003 other downstream 1053186 16275866 ~ 16278857 (-) False micos13
TU216001 other downstream 1053234 16274882 ~ 16278809 (-) True micos13
TU216002 other downstream 1053234 16275668 ~ 16278809 (-) False micos13
TU216000 other downstream 1053234 16275866 ~ 16278809 (-) False micos13
TU215666 other downstream 1639693 15690774 ~ 15692350 (-) True G182210
trnav-uac_1 other upstream 1967757 19310011 ~ 19310083 (-) True trnav-uac_1
trnav-uac_2 other upstream 1969557 19311811 ~ 19311883 (-) True trnav-uac_2
trnai-uau_3 other upstream 1969931 19312185 ~ 19312256 (-) True trnai-uau_3
trnav-uac_3 other upstream 1970118 19312372 ~ 19312444 (-) True trnav-uac_3
trnav-uac_4 other upstream 1971242 19313496 ~ 19313568 (-) True trnav-uac_4

Expression Profile