RNA id: TU216023


Basic Information

Item Value
RNA id TU216023
length 1738
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G182511
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 16322185 ~ 16323944 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CATTTAACGAAGAGTTGACGCCAACGTTCTGGAGTTGAGTGCACACACCgaaaatgtttcagtgtttcacgCTATCATGGCGATCAAAACACACTTAACGTTGCAGGGTTTCAGTCAGTGACACGGTGGGGGGGTATTTTGAATTTACCGGTGAATTAAAGAAATCAGGGCTTCTTCTAAAGAAGTCAGACCTTCTTCCCATTGGtcacactgaaatatatatgcaaaatatgTGGAAGCagtgaaaatgtacagaatactgtGAATATGTAAGCCTGAGCATCTGATTTGGAAAAAAGTGGTCAGTAAAAATGGATAATATTCTCATGCCATGACTGATGAATGTCAGTAATATTGTACTGTAGTAGGTGTTGTGTAATCTGATTAAGCCTAGTTATGAGCTctgtagtagtagtattcaTATTCGTTTACTGTAATGCTGGAAAGTAATACATTAAATCAATCTAGGGGAAAAATCGTTAGATTAATCgattatgaaaaaataatcGTTAGTTGGCGCCCTAGTGGTGTTTATAGGATATGCAACATCTATCTCACTATGATCTTCATCTCGATCATAATCACACATATACCTCATCTGTGTGCTCTGAAACTTTGTTATAAATACTCCATTTATAAATTACACATGTCCACATATAATCTCAGGAAATTGGTCCAAAATGATTCAGGATTTCTAATGAGTATAAAATCAGGAAACCAGTGAACATCAGATAACAATAATACACATCCTGAaggtttagaaataaatgcagatCAGACTctgcttgttgttgttATTTCTGATGCTGTAGCTGCACACTAATGACAAATATAACGCAGCAAACTAAACCAAACAGTGAGAGAACTGCAGGGACAATACAAGCAGGCCAGAGTTATCGCTTTCTGAAAACATTTCATCATTCAAAAAATTCAAACTTCAACCAGAAAAACAGCGAGGAAATGTTTAAAGTTGAACTAGTGTGTGTGGCGCTGAGAGCGCGCACTTAGCTGTTTACAACTCAGCCAGGTCCCTGGTGTTAACGGTCAGGCTACAGACCAAAcggaaaaacaaataaaaataataataataaccaacaCCAAAACATTCGAAACAATGTGTAAACACCTGGTCAAAACAATGTAGTTCAAACGAATTTCTATAATAAAGCAAGCACTGCATAAAACCTAAATTACGCCATCGCCTTTAGCTAAGGGTTAAGAGAAAATCTCGGCGCACAAACTTTAGCTAGCTTGGTTTAGCTTAGCACGCTCGCGCTGTTATGTTAGCAAGGCTGGCTAGTGGCTAAATAACCGCGTCGAGTTCTCACAGAGTTCCTCGTTAAAGCTTccacaacaaacacaacaaaccacCGAGCTAAAATATCGCGAAAATGTTCccgagggaaaagaaaaaaaccaagGATTATAGGTTTATCTAGGCTCTGAAAACTTCGAAATGGCTAACTGTGGCTCTGCCAAGTTGCGAAGTTTGGAAAAGACAGAACAAAAAGGGGGGAAAAGCAGCAAAGTCCGCTCACCTGGCTGAAGTAAGAGGGACAGAGAAACCATGACAAGCGAAATCCGGTTAAAAAGCTGCAGCTTAGCCGAGTTGAGAGTTCCGCTTCTCCCCATGCCAATCCATTCAGTTAGAATGGAGATCACCAACTTCTGCTGCTCATCGACGCTGCGGAGAAACACAACAACTCTCAcagcacatctctctctctctctctctctc

Function

GO: NA

KEGG:

id description
ko05322 Systemic lupus erythematosus
ko05034 Alcoholism

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU215999 lncRNA downstream 53755 16267386 ~ 16268430 (-) True G182494
TU215998 lncRNA downstream 61869 16260058 ~ 16260316 (-) True G182493
TU215857 lncRNA downstream 240882 16074631 ~ 16081303 (-) False G182372
TU215858 lncRNA downstream 240882 16074631 ~ 16081303 (-) True G182372
TU215824 lncRNA downstream 285763 16036209 ~ 16036422 (-) True G182341
TU216803 lncRNA upstream 454073 16778017 ~ 16778955 (-) True G183145
TU216838 lncRNA upstream 522485 16846429 ~ 16849260 (-) True G183170
TU216840 lncRNA upstream 522485 16846429 ~ 16849260 (-) False G183170
TU216841 lncRNA upstream 522485 16846429 ~ 16849260 (-) False G183170
TU216833 lncRNA upstream 587774 16911718 ~ 16952993 (-) True G183166
XM_026922641.2 mRNA downstream 43365 16275648 ~ 16278820 (-) False micos13
XM_026924607.2 mRNA downstream 149870 16123503 ~ 16172315 (-) True polrmt
XM_026929730.2 mRNA downstream 311870 16002051 ~ 16010315 (-) True atp5f1d
XM_026919604.2 mRNA downstream 331770 15971586 ~ 15990415 (-) True midn
XM_026916579.2 mRNA downstream 436317 15880230 ~ 15885868 (-) False cirbpb
XM_034308831.1 mRNA upstream 11009 16334953 ~ 16523168 (-) False celf5a
XM_034308830.1 mRNA upstream 11009 16334953 ~ 16523168 (-) False celf5a
XM_026921572.2 mRNA upstream 11009 16334953 ~ 16523168 (-) False celf5a
XM_026921564.2 mRNA upstream 11009 16334953 ~ 16523168 (-) True celf5a
XM_026929893.2 mRNA upstream 228353 16552297 ~ 16554351 (-) True rxfp3.2b
TU216003 other downstream 43328 16275866 ~ 16278857 (-) False micos13
TU216001 other downstream 43376 16274882 ~ 16278809 (-) True micos13
TU216002 other downstream 43376 16275668 ~ 16278809 (-) False micos13
TU216000 other downstream 43376 16275866 ~ 16278809 (-) False micos13
TU215666 other downstream 629835 15690774 ~ 15692350 (-) True G182210
TU216998 other upstream 921828 17245772 ~ 17342243 (-) False zgc:172076
trnav-uac_1 other upstream 2986067 19310011 ~ 19310083 (-) True trnav-uac_1
trnav-uac_2 other upstream 2987867 19311811 ~ 19311883 (-) True trnav-uac_2
trnai-uau_3 other upstream 2988241 19312185 ~ 19312256 (-) True trnai-uau_3
trnav-uac_3 other upstream 2988428 19312372 ~ 19312444 (-) True trnav-uac_3

Expression Profile