atp5f1d (atp5d)


Basic Information

Item Value
gene id atp5f1d
gene name atp5d
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 16002051 ~ 16010315 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026929730.2
GGTAACTCCACTGTGCCCTTGCGCTCTCGGTTGCtcactgaatgactgactgCTCGCTCGCTCGGCCCGGGGGTCTGTAGCTCGTTTATTTGTGTGCTGGAAAGTCGAGCTTTGTTCACAGTTAGAAGACAGAATGATGGCCGCGAGATTTCTGCTCCGCCGCGCGGCTCCTGCGCTGAAACAGGTTCGCGCTTACGCCGAGGCGGCCGCCGGGTCTCCGCAGATGTCCTTCACATTCGCCTCGCCGAATGAGGTCTTCTTCAATGGAGCCAGTGTGAAGCAGGTCGATGTCCCCACGATGACCGGCGCCTTCGGTATCCTCCCTGCTCATGTCCCCACGCTGCAGGTGCTGAGGCCCGGGGTGGTCACTGTCTTCAGCGAGGACGGCTCCTCTGCTAAGTATTTTGtgagcagtGGTTCAGTCACCGTCAATGCTGACTCTTCGGTGCAGCTGCTTGCTGAGGAGGCTGTTCCTCTGGATAGCCTGGACCTTTCTGCTGCTAAAGCTAATCTGGATAAGGCCCAGTCCGAGTTGGTCAGCGCTTCAGATGAGGCCTCTAGGGCAGAAGCCCAGATCAGCATAGAAGCCAATGAAGCTATCATCAAAGCTCTGGAATAAATTTGTCATCTTCATGGTCAGAAGCTCTTATCAATTCCCGAACCCAGACGAAGTCAGTAACCGCAAGTCAAGCCGATTGCTTTGTACAGTGGATGAATATACCAATAAATTTATTTGGAAATAA

Function

symbol description
atp5d Predicted to enable proton transmembrane transporter activity. Predicted to contribute to proton-transporting ATP synthase activity, rotational mechanism. Predicted to be involved in mitochondrial ATP synthesis coupled proton transport and mitochondrial proton-transporting ATP synthase complex assembly. Predicted to act upstream of or within proton transmembrane transport. Located in mitochondrial inner membrane. Is expressed in several structures, including alimentary system; eye; genitourinary system; integumental system; and nervous system. Human ortholog(s) of this gene implicated in mitochondrial complex V (ATP synthase) deficiency. Orthologous to human ATP5F1D (ATP synthase F1 subunit delta).

NR:

description
ATP synthase subunit delta, mitochondrial-like

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0015986 ATP synthesis coupled proton transport biological_process
GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1) cellular_component
GO:0046933 proton-transporting ATP synthase activity, rotational mechanism molecular_function
GO:0046961 proton-transporting ATPase activity, rotational mechanism molecular_function

KEGG:

id description
K02134 ATPeF1D, ATP5D, ATP16; F-type H+-transporting ATPase subunit delta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026929730.2 True 743 mRNA 0.54 5 16002051 16010315

Neighbor

gene id symbol gene type direction distance location
midn midn,LOC108271022,LOC103463687,LOC102230511,LOC106954193,LOC100691436,LOC102311033 coding downstream 11636 15971586 ~ 15990415 (-)
cirbpb cirbp,LOC108271114 coding downstream 116183 15880230 ~ 15885868 (-)
tmem161a tmem161a,LOC107599454,LOC107719614,LOC107728546,LOC107554814 coding downstream 296813 15695154 ~ 15705238 (-)
tmem221 tmem221 coding downstream 326821 15671606 ~ 15675230 (-)
rfxank rfxank,LOC107599486,LOC107554808,LOC107687741,LOC107719616 coding downstream 333268 15665587 ~ 15668783 (-)
polrmt polrmt,LOC107569035,LOC101483880,LOC107719647 coding upstream 113188 16123503 ~ 16172315 (-)
celf5a celf5 coding upstream 324638 16334953 ~ 16523168 (-)
rxfp3.2b LOC108270668,LOC107655214,LOC108435892,LOC107719591,LOC107729713,LOC107586455,LOC107596869,LOC107675915 coding upstream 541982 16552297 ~ 16554351 (-)
creb3l3a LOC108271409,LOC108435893 coding upstream 548391 16558706 ~ 16569245 (-)
btbd2a btbd2a,LOC108271001,LOC108435919,LOC107719589,LOC107586379,LOC107675907,LOC107655211 coding upstream 572985 16583300 ~ 16593189 (-)
G182327 NA non-coding downstream 1738 16000078 ~ 16000313 (-)
G182325 NA non-coding downstream 4154 15997696 ~ 15997897 (-)
G182303 NA non-coding downstream 23335 15904278 ~ 15978716 (-)
G182318 NA non-coding downstream 27432 15970065 ~ 15974619 (-)
G182298 NA non-coding downstream 108991 15892846 ~ 15893060 (-)
G182340 NA non-coding upstream 22661 16032976 ~ 16033187 (-)
G182341 NA non-coding upstream 25894 16036209 ~ 16036422 (-)
G182372 NA non-coding upstream 64316 16074631 ~ 16081303 (-)
G182493 NA non-coding upstream 249743 16260058 ~ 16260316 (-)
G182494 NA non-coding upstream 257071 16267386 ~ 16268430 (-)
G182210 NA other downstream 309701 15690774 ~ 15692350 (-)
lama3 LOC108270685 other downstream 1422304 14550906 ~ 14579747 (-)
tnfaip8l1 tnfaip8l1,LOC107702643,LOC107727554,LOC107698600 other downstream 1494441 14497150 ~ 14507610 (-)
LOC113532209 LOC108271183 other downstream 1508192 14487120 ~ 14493859 (-)
zfr2 zfr2,LOC108271074,LOC107742797,LOC108430234 other downstream 1541714 14437360 ~ 14460337 (-)
micos13 c10h19orf70,cunh19orf70 other upstream 264567 16274882 ~ 16278857 (-)
zgc:172076 LOC108271265,LOC108411951 other upstream 1235457 17245772 ~ 17342254 (-)
traf5 LOC108271110,LOC108411952 other upstream 1332500 17342815 ~ 17352369 (-)
trnav-uac_6 NA other upstream 3305804 19316119 ~ 19316374 (-)
G184716 rps15,LOC107685215,LOC107578086 other upstream 3684947 19695262 ~ 19697709 (-)

Expression


Co-expression Network