creb3l3a (LOC108271409,LOC108435893)


Basic Information

Item Value
gene id creb3l3a
gene name LOC108271409,LOC108435893
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 16558706 ~ 16569245 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026929882.2
GATGATCAGATGATTGTACTGCTGGAGTTTAGACTTTGTCCCCACAGTGagatcagacagagagaaaggcaggACTAAAACACAGCGGAGGAGCTTacaaatctgtttgtttgtttattttgttaaaaactttTCCCTACAGTAATTAGATTGTTGGCAGTATCCTTGACAGGCCACGGTGATGGAATTCTACTCAGAACAGGCTTGTGATGGGATAGAACTGCTGGATCTGCTTTTCGATAAGAATGATGGCATCTTGTGCCAGGAGAACATGATGCACCATAATGACCAGCCTTGGCCGATGCAAGACCCTAATATGATGATGCCGGCTCAGGGTAGTGAAGACTTCTTCAACACCTTGCTGAGTGGGACCGACTCTGCGTCTGGCTCTCCGTTATGGCCGCCCTCTCCAAGTGACAGTGGAATAAGTGAGGACCCGCACTCTGACCAGAATGACAGCCCTCCTCCTCCTGGGAGTCCCCCTCTGGAACCCTGCTATgtgcctccacacacacattatgctCCTGCTCCAAACACATCTATGGCCATCAATCCTGATGGCTGGGGGTCTGGTATTTTACTGGAAGAGGGTGCAGGGAGGCAGCATGCATGCGAAGTGCCTCCAGATCAACTGGCCACCTCCTTCCCTCTCACCATCAAGGATCTGCTGCTCTCTGGTGCTCCAGAGCCTTCTCCACCGGCTTCACAGCAATCTTGCCAGGAGCTGGTTCTCAATGAGGACGAGAAGAAACTACTCGTCAAGGAGGGAGTGACTTTGCCAAGTCAACTTCCTCTTACCAAGTTTGAGGAGAGGATTCTGAAGAAAATCCGCAGGAAGATCCGTAATAAGCAGTCTGCCCAGGAgagcaggaagaagaagaaagaatacATAGATGGACTGGAAAGCAGGATGGCAGCTTGCAGTGTGGAGAACCAAGAGCTGCAGAGGAAAGTCTTCCAGCTGGAGAAATGTAACATCTCTCTGATGGAGCAGCTGCGTCGGCTGCAGGCTATGGTCATGAATGGATCTAACAAACCGGCTCAGACCGGGACCTGCGTGCTGGTGCTGCTGCTGTCATTCACTCTGATTCTGCTGCCCAGCCTGAAGCCCTTCACCGAGACCAAGGTCAGCCAGTCTGGAGACTTCAGCCCACTTAGAGTTCAGTCACGGTCATTGCACAGTCTGCAGTCCTCTCGGGTGATGCATGCTCTGGAGCGTCCTTACACAGTGGCAGAGGAATCCAAGTCTGTTCCTGGATTTCCTGACGATGAAGGCATGGAGGAGATAGCATCTCTAATGGAGAAACTTCGTCGTGGTCCGGGATTGGCTGATTACAACCTGGGATCTCACAACGCTAGCCTAGACCAGCATGACGATCATTACCATGGTGACCCCATTACTGGGCATATAGCGACAGTGACCTTGAGCTCGCGGCGTGGCGCAAGGTTCCAGCCACACGCAGATGACATGTGAAGGGCAGGGAGGGATTTGTGGCAGGATTTCTCCAACCTCCTTCCACAATGGTTTTACAGATTAAGTTTGCTGCCAGCAAAGCAACGTAGCCTTTTGTCCTTTACCTCCAAAACTAATAAGTGGCAGATAAAATGTTATAACACTAAGATTTAGCATGTTGTGTAAGCTTGTTGTGACCTTAGATCAACTTATACGCTGGACTCCATCCGCACAGGGATAAGATGAAAAGGGCAGAGATAGATTTGTAGCAGGATTTCTCCGAACTCCTACATACAGCAAAACCTAGTCAGCCAAGTTTGCTCTTTACCTTTAATAACACTATGATTTTGTATGTTAAAAATCATTGGTGAAACCAAAGCTCAACTTATACGTGGGTATATAGGTTGTTGATGCTTAAAAGAAAGGATTATGCACAGAAAATAATCCATTCCCAGTGATTAGTGGGATCCTTTCTATTCTGCATGTAAGTttttgttaacaaatgttttgtgAAATACATTTTGCTTCTACATGGAACAGAAGCTATGATGCATCTTTGGCCATGTGATGAACAAATAACTCCATGTCATAGTTtagatgtttgtttgtgtatataataaAGCTTCTACTGACATTAATGCACTGTAAAATCTATAATCATAACTGTATTTCAAGCACTTTATGCAGCTCATTTTATGATATGTTCAATAAACTCTTTTGAACTTGTTA
>XM_034308981.1
AGCTCCATGTGTCACTGGTTTAATCCTGAGCACCTGTTACTATTTGTGAAGAGTTTCTCTGCATTTTTTCCCAGTGaccatgtgggtttcttctggaaTCGCTCTGGGATCTTCTTCTGGGTTCCCTCACAAAAAATGCTGTAATTAGATTGTTGGCAGTATCCTTGACAGGCCACGGTGATGGAATTCTACTCAGAACAGGCTTGTGATGGGATAGAACTGCTGGATCTGCTTTTCGATAAGAATGATGGCATCTTGTGCCAGGAGAACATGATGCACCATAATGACCAGCCTTGGCCGATGCAAGACCCTAATATGATGATGCCGGCTCAGGGTAGTGAAGACTTCTTCAACACCTTGCTGAGTGGGACCGACTCTGCGTCTGGCTCTCCGTTATGGCCGCCCTCTCCAAGTGACAGTGGAATAAGTGAGGACCCGCACTCTGACCAGAATGACAGCCCTCCTCCTCCTGGGAGTCCCCCTCTGGAACCCTGCTATgtgcctccacacacacattatgctCCTGCTCCAAACACATCTATGGCCATCAATCCTGATGGCTGGGGGTCTGGTATTTTACTGGAAGAGGGTGCAGGGAGGCAGCATGCATGCGAAGTGCCTCCAGATCAACTGGCCACCTCCTTCCCTCTCACCATCAAGGATCTGCTGCTCTCTGGTGCTCCAGAGCCTTCTCCACCGGCTTCACAGCAATCTTGCCAGGAGCTGGTTCTCAATGAGGACGAGAAGAAACTACTCGTCAAGGAGGGAGTGACTTTGCCAAGTCAACTTCCTCTTACCAAGTTTGAGGAGAGGATTCTGAAGAAAATCCGCAGGAAGATCCGTAATAAGCAGTCTGCCCAGGAgagcaggaagaagaagaaagaatacATAGATGGACTGGAAAGCAGGATGGCAGCTTGCAGTGTGGAGAACCAAGAGCTGCAGAGGAAAGTCTTCCAGCTGGAGAAATGTAACATCTCTCTGATGGAGCAGCTGCGTCGGCTGCAGGCTATGGTCATGAATGGATCTAACAAACCGGCTCAGACCGGGACCTGCGTGCTGGTGCTGCTGCTGTCATTCACTCTGATTCTGCTGCCCAGCCTGAAGCCCTTCACCGAGACCAAGGTCAGCCAGTCTGGAGACTTCAGCCCACTTAGAGTTCAGTCACGGTCATTGCACAGTCTGCAGTCCTCTCGGGTGATGCATGCTCTGGAGCGTCCTTACACAGTGGCAGAGGAATCCAAGTCTGTTCCTGGATTTCCTGACGATGAAGGCATGGAGGAGATAGCATCTCTAATGGAGAAACTTCGTCGTGGTCCGGGATTGGCTGATTACAACCTGGGATCTCACAACGCTAGCCTAGACCAGCATGACGATCATTACCATGGTGACCCCATTACTGGGCATATAGCGACAGTGACCTTGAGCTCGCGGCGTGGCGCAAGGTTCCAGCCACACGCAGATGACATGTGA

Function

NR:

description
PREDICTED: cyclic AMP-responsive element-binding protein 3-like protein 3-B

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0005634 nucleus cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09048 CREB3; cyclic AMP-responsive element-binding protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026929882.2 True 2182 mRNA 0.46 10 16558706 16567911
XM_034308981.1 False 1473 mRNA 0.52 11 16559414 16569245

Neighbor

gene id symbol gene type direction distance location
rxfp3.2b LOC108270668,LOC107655214,LOC108435892,LOC107719591,LOC107729713,LOC107586455,LOC107596869,LOC107675915 coding downstream 4355 16552297 ~ 16554351 (-)
celf5a celf5 coding downstream 35538 16334953 ~ 16523168 (-)
polrmt polrmt,LOC107569035,LOC101483880,LOC107719647 coding downstream 386391 16123503 ~ 16172315 (-)
atp5f1d atp5d coding downstream 548391 16002051 ~ 16010315 (-)
midn midn,LOC108271022,LOC103463687,LOC102230511,LOC106954193,LOC100691436,LOC102311033 coding downstream 568291 15971586 ~ 15990415 (-)
btbd2a btbd2a,LOC108271001,LOC108435919,LOC107719589,LOC107586379,LOC107675907,LOC107655211 coding upstream 14055 16583300 ~ 16593189 (-)
si:dkey-110c1.10 si:dkey-110c1.10,LOC108270951,LOC108430112 coding upstream 80898 16650143 ~ 16668321 (-)
mbd3b LOC108270953,LOC108430109 coding upstream 99702 16668947 ~ 16676541 (-)
tcf3b LOC100305065,LOC108430108 coding upstream 111855 16681100 ~ 16702128 (-)
zbtb7a LOC108270628 coding upstream 148787 16718032 ~ 16734673 (-)
G182511 NA non-coding downstream 234762 16322185 ~ 16323944 (-)
G182494 NA non-coding downstream 290276 16267386 ~ 16268430 (-)
G182493 NA non-coding downstream 298390 16260058 ~ 16260316 (-)
G182372 NA non-coding downstream 477403 16074631 ~ 16081303 (-)
G182341 NA non-coding downstream 522284 16036209 ~ 16036422 (-)
G183145 chaf1a,LOC107679837,LOC107717976,LOC107593329 non-coding upstream 208772 16778017 ~ 16778955 (-)
G183170 NA non-coding upstream 277184 16846429 ~ 16849260 (-)
G183166 NA non-coding upstream 342473 16911718 ~ 16952993 (-)
G183276 NA non-coding upstream 620116 17189361 ~ 17192232 (-)
G183328 NA non-coding upstream 704973 17274218 ~ 17376098 (-)
micos13 c10h19orf70,cunh19orf70 other downstream 279849 16274882 ~ 16278857 (-)
G182210 NA other downstream 866356 15690774 ~ 15692350 (-)
lama3 LOC108270685 other downstream 1978959 14550906 ~ 14579747 (-)
tnfaip8l1 tnfaip8l1,LOC107702643,LOC107727554,LOC107698600 other downstream 2051096 14497150 ~ 14507610 (-)
LOC113532209 LOC108271183 other downstream 2064847 14487120 ~ 14493859 (-)
zgc:172076 LOC108271265,LOC108411951 other upstream 676527 17245772 ~ 17342254 (-)
traf5 LOC108271110,LOC108411952 other upstream 773570 17342815 ~ 17352369 (-)
trnav-uac_6 NA other upstream 2746874 19316119 ~ 19316374 (-)
G184716 rps15,LOC107685215,LOC107578086 other upstream 3126017 19695262 ~ 19697709 (-)
dda1 dda1,LOC107685208,LOC105913185,LOC105939318 other upstream 3136837 19706082 ~ 19712597 (-)

Expression


Co-expression Network