midn (midn,LOC108271022,LOC103463687,LOC102230511,LOC106954193,LOC100691436,LOC102311033)


Basic Information

Item Value
gene id midn
gene name midn,LOC108271022,LOC103463687,LOC102230511,LOC106954193,LOC100691436,LOC102311033
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 15971586 ~ 15990415 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026919604.2
ATAAATAGACTCAAATAGGCGCAAAGCAGTCGCCTCGGAACGGGACCGGAATACCGGCGTGTACTGGTACTGCTTTAAGAGGACTATAACTGCTCATAAACAGCTCATAGGTGTCGGAAGCTGAAGTCTAAAATCACGCACGTTTTTGGATCTATAACTGTATGTCTATAGGCTATAAGATCGTGGATTAGTGCATATACTACAAGGACACATACAGCAACCACTCAATACATGCCGAAACCGGGGGATCTTCAGGAATCGCGGAGCTTTGAGGTTTTCGCCACAATAATCGGCTCTCGAATGGACCCGCAGCCGAGCGCGCCCCCGATGAACCTGCACATTCACTCCACTACGGGCACGCGCTTCGAGCTCTGCCTCCCCGCCGAGGAGACCGTAGAGGGGCTCAAGAGGAGGCTGTCTCAGAGGCTCAAGGTGCCCAAAGAGAGACTTGCGCTTCTGCACAAAGAGACGCGCCTGAGTTCAGGGAAGCTTCAGGACTTGGGCATTACAGATGGGAGCAAATTAACTCTTGTACCGACAGTCGAAGCAGGTCTAATGTCTCAAGCATCAAGACCTGAGCAGTCAGTCATGCAGGCTTTGGAGAGTCTAACTGAAACGCAGGTCAGCGACTTCCTGTCTGGCCGCTCTCCACTGACCCTGGCCCTGCGCGTGGGTGATCATATGATGTTTGTCCAGCTGCAGTTGGCAGCACAGCACTCGGGCAACCAGCATTCGCAACACCGGCATCTCGTCACACGTAGTAGCTCTGATGGTACAACAGGACATTCAGCAGGTGCTGCAGCCATTACTGGAACCCAGAACCGGGTATCTCACAACCcccaccaacaccaacacacacaccatctgcaAACAACGCTTCCACCCAGCCCTGTGAGCCCTACAccttttcctccttcttctccttctggCCACTCTATGCCCCCTATGTATCCCACCTCAACGTCCAGGCACTGCAGTACCCCACCCCGCTCCTCGCATCTCCCAGAAGGTATCTTCCGATCTCAGCAGCCGCTGTCGCCCTGTCAAAGCGGCTCTAGCCCTGCTGGCCCCTGTCCAGAGACAAACTGCACCACAAAGGCTATGGGCAACTGCAGCGGACCGTCCCGTTCTCGTAAACCAGGTGCTATCATTGAAAGTTTCGTCAACCATGCTCCTGGAGTCTTCTCTGGGACGTTTTCAGGCACTTTGCACCCAAACTGTCAGGACAGCAGCGGGCGGCCACGGCGTGATATCAGCACCATTTTGCAGATCTTGAATGACCTGCTGAGCGCCACACGCCACTACCAGGGCATGCCCGCCTCTCTCACGCAGCTCCGCTACCAGACACAGTGCGGTGGTGGGGCATCTCCGGCGCCCTCGCCACCGCCTTCACCTCCAGCCACAACCGAGCTCGCCAGCCTCTCCTCCAAAGCTACCTCTGTGCCGTCTGTGAGCCAGGCACCTCTCCACCCACTGGTGCAGTGCCAGAGCCAGGTCCGAATGTGCAAACCTCCtgGTGACCGACTGAGGCAGACAGAGAACCGAGCAACACGCTGTAAAGTGGAGAGGCTGCAGCTGCTCATGCAGCAGAAGCGGCTAAGGCGGAAGGCTCGGAGGGACTCCCGTGCTCCCTACCAGTGGCTCCCCAACCGCAAGGCCGGACgcagcaacagcaacagcagcatgTCCAGCGAAGGCTCACTCGACCTGGACTTCGACGACTCGGTATGGAAACCTGATGTCAAGGCTGACATGAAGTCCGAGTTCATCATGGCCTGAAACAACGTCTTAACCGAGGAGCGGCGACGGAGTTAGCTTTTATGTACAGCAACAGGAATAATGTGAGACTGTAAGGCTGGTGTTGACTGAGAAAAAACCCACAAGCATCATACGCTTCCCAGCAAACAGACTTGTTTCACAAAGGAAGTTAAACTGACCTTTACCATGTATCCCTGTCAGCCTATGATTACGAAAATGGACTGAAAAAACTGTCACAAGAAgtaaaagcaagaaagaagcaTAGCAGACTTCAATGGTTTAgggtattttctttttctttctcctttcccAAGGAGAACACAGGGATGGAAATCCATCCAGGGCAAATGCAGCTATCACAAATCCAGAAaacccatgttttttttttctttttttcttttcttcccacAGGGGCATTCACAATTTACGAGCCATGAAGCAGATCTTGAATGGGgatgatttgttttttgtttatgcttttattactattaatcaATTTACTATTTTGAAACAAATATGTAGCATTACCCACATAGCATTCAGGTTTCTAATCTTATGGATGAGGAGGTTTTATTTGCACATATCTTTGATTTTCAACACAAGGTCAATACATGAAATGGTACCGTGCATGTTGAGCCTCACAAAGCTTTTTAAATGCAGCTTGGTGTAGTGACAGGTTTAAAGAGGGAACCACAAAAGCAAAACACGAATTGTAAAGACAGTCAGATATCATATTTAATCGAGTTCCGTTCAAATCTGACATGGCTAGTTAAACATCCAGAGTTTCTTTTACATTGCTTAGTGCATTTACCACAATAGTGTCCAGCAAAATCTCTTATTGTCTGTCTGCACTCATGAGAAAATTGCTGATTAACATATCCTCAAAGCATTTGAGCCCATCCTTCCACTTGAGAAGTCTCCTGTCTTGTCTATGTGATGGTAGTCTCTTGAGAAAACCTTTTGCAAATTGCTCTTAAGTGATGGCCTACTTAAATTACCCTTGTTTAAGCCCCTCATTCTGTCTTGTTAGATGGAAAAACAGGAGAACAATAGGCCTACAGCCGCCATCTTCCCCTGCTCGATAGTGCCTCACGGGTAGATGCACTAACATCCAATTAGGCCTTCCACAGACCCACAGGTCTGCTGCTACACGAGACTTTACTTTGCATGCAGATGTGTGAATTAGGCTCTTTTctgtgtaaaacaaaacaaaaaaaagatataa

Function

symbol description
midn Predicted to be located in cytosol and nucleolus. Predicted to be active in nucleus. Is expressed in several structures, including axis; basal plate midbrain region; lens placode; nervous system; and presumptive diencephalon. Orthologous to human MIDN (midnolin).

NR:

description
midnolin-like isoform X2

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026919604.2 True 2983 mRNA 0.49 8 15971586 15990415

Neighbor

gene id symbol gene type direction distance location
cirbpb cirbp,LOC108271114 coding downstream 85718 15880230 ~ 15885868 (-)
tmem161a tmem161a,LOC107599454,LOC107719614,LOC107728546,LOC107554814 coding downstream 266348 15695154 ~ 15705238 (-)
tmem221 tmem221 coding downstream 296356 15671606 ~ 15675230 (-)
rfxank rfxank,LOC107599486,LOC107554808,LOC107687741,LOC107719616 coding downstream 302803 15665587 ~ 15668783 (-)
ncanb ncan,LOC108270525,LOC103376785 coding downstream 326972 15535310 ~ 15644614 (-)
atp5f1d atp5d coding upstream 11636 16002051 ~ 16010315 (-)
polrmt polrmt,LOC107569035,LOC101483880,LOC107719647 coding upstream 133088 16123503 ~ 16172315 (-)
celf5a celf5 coding upstream 344538 16334953 ~ 16523168 (-)
rxfp3.2b LOC108270668,LOC107655214,LOC108435892,LOC107719591,LOC107729713,LOC107586455,LOC107596869,LOC107675915 coding upstream 561882 16552297 ~ 16554351 (-)
creb3l3a LOC108271409,LOC108435893 coding upstream 568291 16558706 ~ 16569245 (-)
G182298 NA non-coding downstream 78526 15892846 ~ 15893060 (-)
LOC113546824 NA non-coding downstream 138042 15830524 ~ 15833544 (-)
G182212 NA non-coding downstream 276884 15693969 ~ 15694702 (-)
G182209 NA non-coding downstream 283168 15688199 ~ 15688418 (-)
G181810 NA non-coding downstream 803915 15167158 ~ 15167671 (-)
G182325 NA non-coding upstream 7281 15997696 ~ 15997897 (-)
G182327 NA non-coding upstream 9663 16000078 ~ 16000313 (-)
G182340 NA non-coding upstream 42561 16032976 ~ 16033187 (-)
G182341 NA non-coding upstream 45794 16036209 ~ 16036422 (-)
G182372 NA non-coding upstream 84216 16074631 ~ 16081303 (-)
G182210 NA other downstream 279236 15690774 ~ 15692350 (-)
lama3 LOC108270685 other downstream 1391839 14550906 ~ 14579747 (-)
tnfaip8l1 tnfaip8l1,LOC107702643,LOC107727554,LOC107698600 other downstream 1463976 14497150 ~ 14507610 (-)
LOC113532209 LOC108271183 other downstream 1477727 14487120 ~ 14493859 (-)
zfr2 zfr2,LOC108271074,LOC107742797,LOC108430234 other downstream 1511249 14437360 ~ 14460337 (-)
micos13 c10h19orf70,cunh19orf70 other upstream 284467 16274882 ~ 16278857 (-)
zgc:172076 LOC108271265,LOC108411951 other upstream 1255357 17245772 ~ 17342254 (-)
traf5 LOC108271110,LOC108411952 other upstream 1352400 17342815 ~ 17352369 (-)
trnav-uac_6 NA other upstream 3325704 19316119 ~ 19316374 (-)
G184716 rps15,LOC107685215,LOC107578086 other upstream 3704847 19695262 ~ 19697709 (-)

Expression


Co-expression Network