G182209


Basic Information

Item Value
gene id G182209
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 15688199 ~ 15688418 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU215665
GGAAAACACTGAGTAGCCGAAGCCTTCACCCACGCGCAGACATATGGGAAGTGAAAACAAGATGTGGGTGAACTTCTTTTTCACCCCTATCCACCCACCATCTCAacctctcacactctctcttgcCGAAAGGAGAAGTCATTGTAACAGCTGACCTTTTTCGTTCAGTCACATCTGTATATATGGTGGTACCAGCAAGAAGTGTCAAATGCACCCTAGA

Function

NR:

description
Tc1-like transporase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU215665 True 220 lncRNA 0.47 1 15688199 15688418

Neighbor

gene id symbol gene type direction distance location
tmem221 tmem221 coding downstream 12969 15671606 ~ 15675230 (-)
rfxank rfxank,LOC107599486,LOC107554808,LOC107687741,LOC107719616 coding downstream 19416 15665587 ~ 15668783 (-)
ncanb ncan,LOC108270525,LOC103376785 coding downstream 43585 15535310 ~ 15644614 (-)
si:ch73-63e15.2 LOC108271013,LOC108429539,LOC107669818,LOC106573581 coding downstream 185543 15445028 ~ 15502656 (-)
tjp3 LOC108271152 coding downstream 249475 15417214 ~ 15438724 (-)
tmem161a tmem161a,LOC107599454,LOC107719614,LOC107728546,LOC107554814 coding upstream 6736 15695154 ~ 15705238 (-)
cirbpb cirbp,LOC108271114 coding upstream 191812 15880230 ~ 15885868 (-)
midn midn,LOC108271022,LOC103463687,LOC102230511,LOC106954193,LOC100691436,LOC102311033 coding upstream 283168 15971586 ~ 15990415 (-)
atp5f1d atp5d coding upstream 313633 16002051 ~ 16010315 (-)
polrmt polrmt,LOC107569035,LOC101483880,LOC107719647 coding upstream 435085 16123503 ~ 16172315 (-)
G181810 NA non-coding downstream 520528 15167158 ~ 15167671 (-)
G181781 NA non-coding downstream 561017 15126661 ~ 15127182 (-)
G181779 NA non-coding downstream 566533 15121455 ~ 15121666 (-)
LOC117598447 NA non-coding downstream 624162 15060131 ~ 15064037 (-)
G181721 NA non-coding downstream 705640 14977671 ~ 14982559 (-)
G182212 NA non-coding upstream 5551 15693969 ~ 15694702 (-)
LOC113546824 NA non-coding upstream 142106 15830524 ~ 15833544 (-)
G182298 NA non-coding upstream 204428 15892846 ~ 15893060 (-)
G182303 NA non-coding upstream 215860 15904278 ~ 15978716 (-)
G182318 NA non-coding upstream 281647 15970065 ~ 15974619 (-)
lama3 LOC108270685 other downstream 1108452 14550906 ~ 14579747 (-)
tnfaip8l1 tnfaip8l1,LOC107702643,LOC107727554,LOC107698600 other downstream 1180589 14497150 ~ 14507610 (-)
LOC113532209 LOC108271183 other downstream 1194340 14487120 ~ 14493859 (-)
zfr2 zfr2,LOC108271074,LOC107742797,LOC108430234 other downstream 1227862 14437360 ~ 14460337 (-)
rx1 LOC108270609 other downstream 1273130 14408726 ~ 14415069 (-)
G182210 NA other upstream 2356 15690774 ~ 15692350 (-)
micos13 c10h19orf70,cunh19orf70 other upstream 586464 16274882 ~ 16278857 (-)
zgc:172076 LOC108271265,LOC108411951 other upstream 1557354 17245772 ~ 17342254 (-)
traf5 LOC108271110,LOC108411952 other upstream 1654397 17342815 ~ 17352369 (-)
trnav-uac_6 NA other upstream 3627701 19316119 ~ 19316374 (-)

Expression


Co-expression Network