LOC113546824


Basic Information

Item Value
gene id LOC113546824
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 15830524 ~ 15833544 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003404752.2
GCTAGCTCATTGGAGAGATAGCTTTaattttgcagtatgttttctCACTGGTTCTTCTGAAGGTCCTCACTCCTGATATGAACAGTCTATCTACAGCCCTGTGGTGGATGTGTTTCTGTAATGGAGTACAAAACTCAGTGGTCCATGGGAGCACTCAGTTAGTTGCCTATTTCTCCACATGCACTAATATGACGACATGTAAAAACCTGATGTTCTTGCCTGGCTGCTATGAGTACTGAGAAATGATCTTgcacagtgaaaacacacacagtgttccatCAGTCTGAGTGATGAAAACAATATCCTGATACTGGGAATGAGATTTGACCTCAGACACCAGACTTGGAAAACTTCAGAACATAAAGTGCTTATTCCTAAGGGTTCTGAGCTTCTGACCAGCATGTTTTTCTAGGTCATGATTTATGGAGGCCAGTGAGGGGTTTTGTTGATGCTAATTGTGACAGGGATCTTGTGGTCGGAACCCTCAGAGGAAGCAAAAAGGAGCAGCAAGTAAAACTTCTGACTGGGGGAAGAAAATTTACCCACAGTTAACATCCATCAGGAAACAATCACAGGATTCATATTGCTCTCAGGAATTTTAGGAGAACCAGTTGACAGTTGATATATAATGCAGCACAAGTGAGAATCCTGATTAAATCCCCTGAGAtaccaaaaagaaacaaagcaaagaaatgtttAAGCAAAGAAATGTTCTCCTGGGCGAGGAGACTCTCTCAACAACACTGCCATTCTCTGTAGGAGTATTAAAagtggaccctggagctgttgAGTCTGACGAGTTGCGAGTTCTTTCCATGCCTGCTTGCCTGTTTGGCCAGACCATGGCACTCTTTTGGGAGCAGGTTTTAAGCCATCGTGTGGAgatgatgaaaacagaaatggcTGAGGCAGAGGAAGAAAACCATGTAGGTGTGTGGTCTGTAAGATATATGACCTTTGAAGCAATAGAGCGCAGACAGAAGGTCGCTGTTCAAGCATCAGAGTGGGTCACAGTTGAGTTCACTACATGCTTTAAGTAAATGGAGGGTTCTTCATCGTCATGCTACTTCCAATGCTTACTTCACTTACTGCCATTGCTGTTGGAAATATAAAGGTTTCTGCACTGTTATGGCTCTGTGAATAACCACTCTTCACTATGGCATAAAGACAAATCTTTTTTCAGCAGTACCAAGAACATGCCATTTTAATCTatcaaaaaaaatgttgaataatactgtttgttttttaatgctaAGAAACTACTAAAAATGACCCAGAGACACCTTTTCACCTTTACCCTCATAAAAATGTCAGGGTCTTTCAATGTTTTCCTGCTGTCCTGACCCCCAAATATGGTTACGCTATGGTATTAGCTACATTTTCACAAAAAGGCAAGAGGTTGCACATGAAGTTCAGAATGACCCTGAGTCTGAAGAGACTATTGTTGACCTCATGAAGTACTTCATGAATTATTGATGTATCAGGATGGTAAGTTCATCTGGACTTGCATTTACAGACCTTGCATTCTGTGATGGTACATTTTGTGACTGGCTACTTAACTACTAAAGAACAGCTTGTATGTGTCACAGTTTGACACAACTGCATCTCAGGTTGCATTGTCATGTTTTCAGCAAATCCTgccaaaatgtaatattataacCTCTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003404752.2 True 1665 lncRNA 0.41 4 15830524 15833544

Neighbor

gene id symbol gene type direction distance location
tmem161a tmem161a,LOC107599454,LOC107719614,LOC107728546,LOC107554814 coding downstream 125286 15695154 ~ 15705238 (-)
tmem221 tmem221 coding downstream 155294 15671606 ~ 15675230 (-)
rfxank rfxank,LOC107599486,LOC107554808,LOC107687741,LOC107719616 coding downstream 161741 15665587 ~ 15668783 (-)
ncanb ncan,LOC108270525,LOC103376785 coding downstream 185910 15535310 ~ 15644614 (-)
si:ch73-63e15.2 LOC108271013,LOC108429539,LOC107669818,LOC106573581 coding downstream 327868 15445028 ~ 15502656 (-)
cirbpb cirbp,LOC108271114 coding upstream 46686 15880230 ~ 15885868 (-)
midn midn,LOC108271022,LOC103463687,LOC102230511,LOC106954193,LOC100691436,LOC102311033 coding upstream 138042 15971586 ~ 15990415 (-)
atp5f1d atp5d coding upstream 168507 16002051 ~ 16010315 (-)
polrmt polrmt,LOC107569035,LOC101483880,LOC107719647 coding upstream 289959 16123503 ~ 16172315 (-)
celf5a celf5 coding upstream 501409 16334953 ~ 16523168 (-)
G182212 NA non-coding downstream 135822 15693969 ~ 15694702 (-)
G182209 NA non-coding downstream 142106 15688199 ~ 15688418 (-)
G181810 NA non-coding downstream 662853 15167158 ~ 15167671 (-)
G181781 NA non-coding downstream 703342 15126661 ~ 15127182 (-)
G181779 NA non-coding downstream 708858 15121455 ~ 15121666 (-)
G182298 NA non-coding upstream 59302 15892846 ~ 15893060 (-)
G182303 NA non-coding upstream 70734 15904278 ~ 15978716 (-)
G182318 NA non-coding upstream 136521 15970065 ~ 15974619 (-)
G182325 NA non-coding upstream 164152 15997696 ~ 15997897 (-)
G182327 NA non-coding upstream 166534 16000078 ~ 16000313 (-)
G182210 NA other downstream 138174 15690774 ~ 15692350 (-)
lama3 LOC108270685 other downstream 1250777 14550906 ~ 14579747 (-)
tnfaip8l1 tnfaip8l1,LOC107702643,LOC107727554,LOC107698600 other downstream 1322914 14497150 ~ 14507610 (-)
LOC113532209 LOC108271183 other downstream 1336665 14487120 ~ 14493859 (-)
zfr2 zfr2,LOC108271074,LOC107742797,LOC108430234 other downstream 1370187 14437360 ~ 14460337 (-)
micos13 c10h19orf70,cunh19orf70 other upstream 441338 16274882 ~ 16278857 (-)
zgc:172076 LOC108271265,LOC108411951 other upstream 1412228 17245772 ~ 17342254 (-)
traf5 LOC108271110,LOC108411952 other upstream 1509271 17342815 ~ 17352369 (-)
trnav-uac_6 NA other upstream 3482575 19316119 ~ 19316374 (-)
G184716 rps15,LOC107685215,LOC107578086 other upstream 3861718 19695262 ~ 19697709 (-)

Expression


Co-expression Network